Rh1BG303300
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0017365
Physical Location & Seq
Forward (+)
43982626 .. 43986436
3811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG303300.1

Sequence Viewer

Length: 1047 bp
ATGACTAGTGGTGGACTTCGCACAAGCGTGAAGGGTTACCTCATTGCACAACGTGTCACTGTGGCACTGGAAATAAACACAGTGCATGACGATGAGACGAGCATAAATGCAACTAGCAATTCCACTGCTGCTGATTCTGTGGATCATCCACCTCCACTTTCAGTTCGGGAGAGTTCAGCTTCATACGGGCCCAGTATCTGTGATGGAAATATTCCTTGTTTCCCAATGTGGAGCTCTGCTGCAAAGAGCATGGCTTCATATGGTGTTAGAACCAAATCTAATAGTCTGCCTCACAATGTTCCTTCATCTCCTCAGTCAGAGGTTGAGATCCCTCAGACAGAGGTCGTGACCTTGCAGTCCTTCCATTTGAGGAGCTTCCACTTTAATGAGCTGAAAACAGCCACCACAAACTTCTGTCGACCTGATAGTATTATGGCTCAAGGTGGTCTTGGTTCTGTCTATAAGGGGTGGATTTATGAGCATTCGTTCACAGCTGGCGAGCCTGGTACCAGCATTGCCGTTGTAATAAAGAGGTTTAGCCAACAAAGGACCCTGCAGAGTCAGAAGGACTGGTTGACAGAAGTTAGCTTCCTTGGACACTTGGGTCACCCAAATCTGGTAAAACTGATTGGTTACTGCCTAAAGGATGACATGCGGCTTCGGGTGCATGAATTTATCTCTCAAGGAAGCCTGAACATTCATCTATATGAAAGGGCTTCTCTCTATAAACGACTTTCATGGAACCAGCGTATGAAGATTGCCCTTGGTGCTGCCAAGGGTCTAGCATTTCTTCATAGTAATGAGGCAAAAGTGATATATGGGGACTTTGAAACTTCCAATATCCTTCTTGATTCAGACTATAATGCGAAACTCTATGGTTATGGTTCGGCCATGGAAAGGCTTCAAGGTTATAGGAGCCATGTCTCAGAAGCGGACATGGCTATGTATGAGGAAAAGGTCTTTTTTGCAGCTGCTGCTCGCAGTGTGTATGCAGCTCCTGAGACTTCTAATGGTATTCTTCTGTCACCACCTATACAAGAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

348

Amino Acids

38.37

Weight (kDa)

6.64

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 145 - 295 2.3e-21 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 168 - 302 1.5e-16 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 355, 603
Acc65I GGTACC 1 cut(s) 506
AccB1I GGYRCC 1 cut(s) 506
AccI GTMKAC 1 cut(s) 418
AciI CCGC 2 cut(s) 655, 932
AclWI GGATC 2 cut(s) 150, 322
AcoI YGGCCR 1 cut(s) 888
AcsI RAATTY 1 cut(s) 671
AdeI CACNNNGTG 1 cut(s) 53
AfaI GTAC 1 cut(s) 508
AfiI CCNNNNNNNGG 2 cut(s) 616, 897
AflIII ACRYGT 1 cut(s) 52
AgsI TTSAA 2 cut(s) 830, 905
AhlI ACTAGT 1 cut(s) 5
AjnI CCWGG 1 cut(s) 502
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 8 cut(s) 179, 234, 375, 391, 494, 588, 971, 995
AluI AGCT 8 cut(s) 179, 234, 375, 391, 494, 588, 971, 995
Alw21I GWGCWC 1 cut(s) 236
Alw26I GTCTC 3 cut(s) 89, 928, 995
AlwI GGATC 2 cut(s) 150, 322
AlwNI CAGNNNCTG 3 cut(s) 198, 974, 998
AoxI GGCC 2 cut(s) 188, 888
ApaI GGGCCC 1 cut(s) 192
ApeKI GCWGC 7 cut(s) 128, 239, 770, 968, 971, 974, 992
ApoI RAATTY 1 cut(s) 671
Asp700I GAANNNNTTC 1 cut(s) 900
Asp718I GGTACC 1 cut(s) 506
AspS9I GGNCC 3 cut(s) 188, 189, 549
AsuHPI GGTGA 2 cut(s) 599, 1017
AvaII GGWCC 1 cut(s) 549
BaeGI GKGCMC 1 cut(s) 192
BanI GGYRCC 1 cut(s) 506
BanII GRGCYC 2 cut(s) 192, 236
Bbv12I GWGCWC 1 cut(s) 236
BbvI GCAGC 7 cut(s) 115, 226, 757, 958, 961, 980, 1004
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 503
BciT130I CCWGG 1 cut(s) 504
BcoDI GTCTC 3 cut(s) 89, 928, 995
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 3 cut(s) 6, 114, 782
BfmI CTRYAG 1 cut(s) 554
BisI GCNGC 8 cut(s) 129, 240, 656, 771, 969, 972, 975, 993
BlsI GCNGC 8 cut(s) 130, 241, 657, 772, 970, 973, 976, 994
Bme1390I CCNGG 1 cut(s) 504
Bme18I GGWCC 1 cut(s) 549
BmgT120I GGNCC 3 cut(s) 188, 189, 549
BmiI GGNNCC 5 cut(s) 190, 508, 551, 743, 917
BmrFI CCNGG 1 cut(s) 504
BmrI ACTGGG 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 186
BoxI GACNNNNGTC 1 cut(s) 341
BpuEI CTTGAG 2 cut(s) 423, 666
BsaJI CCNNGG 4 cut(s) 592, 763, 774, 891
Bsc4I CCNNNNNNNGG 2 cut(s) 616, 897
Bse1I ACTGG 3 cut(s) 72, 192, 575
Bse3DI GCAATG 2 cut(s) 42, 513
BseBI CCWGG 1 cut(s) 504
BseDI CCNNGG 4 cut(s) 592, 763, 774, 891
BseGI GGATG 2 cut(s) 145, 652
BseLI CCNNNNNNNGG 2 cut(s) 616, 897
BseMI GCAATG 2 cut(s) 42, 513
BseMII CTCAG 4 cut(s) 326, 347, 939, 990
BseNI ACTGG 3 cut(s) 72, 192, 575
BseRI GAGGAG 2 cut(s) 300, 385
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 7 cut(s) 115, 226, 757, 958, 961, 980, 1004
BshFI GGCC 2 cut(s) 190, 890
BshNI GGYRCC 1 cut(s) 506
BsiHKAI GWGCWC 1 cut(s) 236
BslFI GGGAC 1 cut(s) 836
BslI CCNNNNNNNGG 2 cut(s) 616, 897
BsmAI GTCTC 3 cut(s) 89, 928, 995
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 836
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 2 cut(s) 190, 890
Bsp120I GGGCCC 1 cut(s) 188
Bsp1286I GDGCHC 2 cut(s) 192, 236
Bsp143I GATC 2 cut(s) 142, 327
Bsp19I CCATGG 1 cut(s) 891
BspACI CCGC 2 cut(s) 655, 932
BspANI GGCC 2 cut(s) 190, 890
BspCNI CTCAG 4 cut(s) 325, 346, 938, 991
BspLI GGNNCC 5 cut(s) 190, 508, 551, 743, 917
BspMAI CTGCAG 1 cut(s) 558
BspPI GGATC 2 cut(s) 150, 322
BspT107I GGYRCC 1 cut(s) 506
BsrDI GCAATG 2 cut(s) 42, 513
BsrI ACTGG 3 cut(s) 72, 192, 575
BssECI CCNNGG 4 cut(s) 592, 763, 774, 891
BssMI GATC 2 cut(s) 142, 327
BssT1I CCWWGG 4 cut(s) 592, 763, 774, 891
Bst2UI CCWGG 1 cut(s) 504
Bst4CI ACNGT 2 cut(s) 61, 82
BstAPI GCANNNNNTGC 1 cut(s) 974
BstC8I GCNNGC 3 cut(s) 496, 500, 979
BstDEI CTNAG 4 cut(s) 312, 333, 925, 999
BstDSI CCRYGG 1 cut(s) 891
BstEII GGTNACC 2 cut(s) 35, 605
BstF5I GGATG 2 cut(s) 145, 652
BstKTI GATC 2 cut(s) 145, 330
BstMAI GTCTC 3 cut(s) 89, 928, 995
BstMBI GATC 2 cut(s) 142, 327
BstMWI GCNNNNNNNGC 4 cut(s) 664, 767, 938, 974
BstNI CCWGG 1 cut(s) 504
BstNSI RCATGY 1 cut(s) 655
BstPAI GACNNNNGTC 1 cut(s) 341
BstPI GGTNACC 2 cut(s) 35, 605
BstSCI CCNGG 1 cut(s) 502
BstSFI CTRYAG 1 cut(s) 554
BstSLI GKGCMC 1 cut(s) 192
BstV1I GCAGC 7 cut(s) 115, 226, 757, 958, 961, 980, 1004
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BsuRI GGCC 2 cut(s) 190, 890
BtgI CCRYGG 1 cut(s) 891
BtsCI GGATG 2 cut(s) 145, 652
BtsI GCAGTG 2 cut(s) 123, 988
BtsIMutI CAGTG 5 cut(s) 57, 65, 87, 123, 988
Cac8I GCNNGC 3 cut(s) 496, 500, 979
CaiI CAGNNNCTG 3 cut(s) 198, 974, 998
Cfr13I GGNCC 3 cut(s) 188, 189, 549
Csp6I GTAC 1 cut(s) 507
CviAII CATG 8 cut(s) 86, 250, 652, 668, 738, 892, 920, 937
CviQI GTAC 1 cut(s) 507
DdeI CTNAG 4 cut(s) 312, 333, 925, 999
DpnI GATC 2 cut(s) 144, 329
DpnII GATC 2 cut(s) 142, 327
DraIII CACNNNGTG 1 cut(s) 53
DrdI GACNNNNNNGTC 2 cut(s) 355, 603
DseDI GACNNNNNNGTC 2 cut(s) 355, 603
EaeI YGGCCR 1 cut(s) 888
Ecl136II GAGCTC 1 cut(s) 234
Eco130I CCWWGG 4 cut(s) 592, 763, 774, 891
Eco24I GRGCYC 2 cut(s) 192, 236
Eco47I GGWCC 1 cut(s) 549
Eco53kI GAGCTC 1 cut(s) 234
Eco91I GGTNACC 2 cut(s) 35, 605
EcoICRI GAGCTC 1 cut(s) 234
EcoO109I RGGNCCY 1 cut(s) 549
EcoO65I GGTNACC 2 cut(s) 35, 605
EcoRII CCWGG 1 cut(s) 502
EcoT14I CCWWGG 4 cut(s) 592, 763, 774, 891
EcoT38I GRGCYC 2 cut(s) 192, 236
ErhI CCWWGG 4 cut(s) 592, 763, 774, 891
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 8 cut(s) 89, 253, 655, 671, 741, 895, 923, 940
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 1 cut(s) 836
FatI CATG 8 cut(s) 85, 249, 651, 667, 737, 891, 919, 936
FauNDI CATATG 1 cut(s) 259
FblI GTMKAC 1 cut(s) 418
Fnu4HI GCNGC 8 cut(s) 129, 240, 656, 771, 969, 972, 975, 993
FokI GGATG 2 cut(s) 132, 659
FriOI GRGCYC 2 cut(s) 192, 236
Fsp4HI GCNGC 8 cut(s) 129, 240, 656, 771, 969, 972, 975, 993
FspBI CTAG 3 cut(s) 6, 114, 782
GluI GCNGC 8 cut(s) 129, 240, 656, 771, 969, 972, 975, 993
HaeIII GGCC 2 cut(s) 190, 890
Hin1II CATG 8 cut(s) 89, 253, 655, 671, 741, 895, 923, 940
HincII GTYRAC 2 cut(s) 419, 576
HindII GTYRAC 2 cut(s) 419, 576
HinfI GANTC 3 cut(s) 134, 559, 851
HphI GGTGA 2 cut(s) 599, 1017
Hpy166II GTNNAC 4 cut(s) 14, 419, 489, 576
Hpy188I TCNGA 5 cut(s) 319, 336, 564, 856, 928
Hpy188III TCNNGA 4 cut(s) 167, 346, 848, 998
Hpy8I GTNNAC 4 cut(s) 14, 419, 489, 576
HpyAV CCTTC 5 cut(s) 25, 312, 370, 559, 854
HpyCH4III ACNGT 2 cut(s) 61, 82
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 9 cut(s) 47, 85, 110, 242, 355, 556, 667, 968, 992
HpyF10VI GCNNNNNNNGC 4 cut(s) 664, 767, 938, 974
HpyF3I CTNAG 4 cut(s) 312, 333, 925, 999
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 8 cut(s) 89, 253, 655, 671, 741, 895, 923, 940
KpnI GGTACC 1 cut(s) 510
Kzo9I GATC 2 cut(s) 142, 327
LmnI GCTCC 4 cut(s) 231, 372, 915, 1000
Lsp1109I GCAGC 7 cut(s) 115, 226, 757, 958, 961, 980, 1004
MaeI CTAG 3 cut(s) 6, 114, 782
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 6 cut(s) 35, 55, 346, 605, 632, 1023
MalI GATC 2 cut(s) 144, 329
MboI GATC 2 cut(s) 142, 327
MboII GAAGA 3 cut(s) 766, 782, 1010
MflI RGATCY 1 cut(s) 327
MhlI GDGCHC 2 cut(s) 192, 236
MluCI AATT 2 cut(s) 118, 671
MlyI GAGTC 1 cut(s) 568
MroXI GAANNNNTTC 1 cut(s) 900
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 6 cut(s) 26, 90, 384, 705, 798, 941
MspA1I CMGCKG 2 cut(s) 494, 971
MspR9I CCNGG 1 cut(s) 504
Mva1269I GAATGC 1 cut(s) 481
MvaI CCWGG 1 cut(s) 504
MwoI GCNNNNNNNGC 4 cut(s) 664, 767, 938, 974
NcoI CCATGG 1 cut(s) 891
NdeI CATATG 1 cut(s) 259
NdeII GATC 2 cut(s) 142, 327
NlaIII CATG 8 cut(s) 89, 253, 655, 671, 741, 895, 923, 940
NlaIV GGNNCC 5 cut(s) 190, 508, 551, 743, 917
NmuCI GTSAC 4 cut(s) 55, 346, 605, 1023
NspI RCATGY 1 cut(s) 655
OliI CACNNNNGTG 1 cut(s) 26
PctI GAATGC 1 cut(s) 481
PdmI GAANNNNTTC 1 cut(s) 900
PfeI GAWTC 2 cut(s) 134, 851
PkrI GCNGC 8 cut(s) 130, 241, 657, 772, 970, 973, 976, 994
PleI GAGTC 1 cut(s) 567
PpsI GAGTC 1 cut(s) 567
PpuMI RGGWCCY 1 cut(s) 549
PshAI GACNNNNGTC 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 502
PspEI GGTNACC 2 cut(s) 35, 605
PspGI CCWGG 1 cut(s) 502
PspN4I GGNNCC 5 cut(s) 190, 508, 551, 743, 917
PspOMI GGGCCC 1 cut(s) 188
PspPI GGNCC 3 cut(s) 188, 189, 549
PspPPI RGGWCCY 1 cut(s) 549
PstI CTGCAG 1 cut(s) 558
PstNI CAGNNNCTG 3 cut(s) 198, 974, 998
PsuI RGATCY 1 cut(s) 327
PvuII CAGCTG 2 cut(s) 494, 971
RsaI GTAC 1 cut(s) 508
RsaNI GTAC 1 cut(s) 507
RseI CAYNNNNRTG 6 cut(s) 26, 90, 384, 705, 798, 941
SacI GAGCTC 1 cut(s) 236
SalI GTCGAC 1 cut(s) 417
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 8 cut(s) 129, 240, 656, 771, 969, 972, 975, 993
Sau3AI GATC 2 cut(s) 142, 327
Sau96I GGNCC 3 cut(s) 188, 189, 549
SchI GAGTC 1 cut(s) 568
ScrFI CCNGG 1 cut(s) 504
SduI GDGCHC 2 cut(s) 192, 236
SfcI CTRYAG 1 cut(s) 554
SinI GGWCC 1 cut(s) 549
SmiMI CAYNNNNRTG 6 cut(s) 26, 90, 384, 705, 798, 941
SmlI CTYRAG 2 cut(s) 438, 681
SmoI CTYRAG 2 cut(s) 438, 681
SpeI ACTAGT 1 cut(s) 5
Sse9I AATT 2 cut(s) 118, 671
SsiI CCGC 2 cut(s) 655, 932
SspI AATATT 1 cut(s) 211
SspMI CTAG 3 cut(s) 6, 114, 782
SstI GAGCTC 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 502
StyI CCWWGG 4 cut(s) 592, 763, 774, 891
TaaI ACNGT 2 cut(s) 61, 82
TaiI ACGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 418
TasI AATT 2 cut(s) 118, 671
TauI GCSGC 1 cut(s) 658
TfiI GAWTC 2 cut(s) 134, 851
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 5 cut(s) 64, 72, 87, 130, 988
TseFI GTSAC 4 cut(s) 55, 346, 605, 1023
TseI GCWGC 7 cut(s) 128, 239, 770, 968, 971, 974, 992
Tsp45I GTSAC 4 cut(s) 55, 346, 605, 1023
TspDTI ATGAA 9 cut(s) 171, 246, 294, 684, 689, 723, 726, 767, 782
TspRI CASTG 5 cut(s) 64, 72, 87, 130, 988
VpaK11BI GGWCC 1 cut(s) 549
XapI RAATTY 1 cut(s) 671
XceI RCATGY 1 cut(s) 655
XmiI GTMKAC 1 cut(s) 418
XmnI GAANNNNTTC 1 cut(s) 900
XspI CTAG 3 cut(s) 6, 114, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.