Rroxscaffold_4G00289460
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017365
Physical Location & Seq
Reverse (-)
10088568 .. 10091537
2970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00289460.1

Sequence Viewer

Length: 555 bp
ATGCGGCTTCGGGTGCATGAATTTATCTCTCAAGGAAGCCTGAACATTCATCTATATGAAAGGGCTTCTCTCTATAAACGACTTTCATGGAACCAGCGTATGAAGATTGCCCTTGGTGCTGCCAAGGGTCTAGCATTTCTTCATAGTAATGAGGCAAAAGTGATTTATGGGGACTTTGAAACTTCCAATATCCTTCTTGATTCAGACTATAATGCCAAACTCTATGGTTATGGTTCGGCCATGGAAAGGCTTCAAGGTTATAGGAGCCATGTCTCAGAAGCGGACATGGCAATGTATGAGGACAAGGTCTTTCCTGTAGCTGCTGCTCACAGTGTGTATGCAGCTCCTGAGACTTCTAATGGTGGTTCTGCCAAGTATGCCAGCAAACGCGACATTGCACACTTTTTTGATGCTCATATTGATGGGCAGTACTCTAAGGACAGGGGTCTCAAAGCACTTAACCTTGCAATTCAGTGCATCTCAAAGGAACCGGTGTCCAGGCCAAACATGAATGAGGTGGTAGAGATATTGGAGCAGATTCAGTCGTCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

184

Amino Acids

20.65

Weight (kDa)

7.84

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 5 - 132 9.7e-08 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 5 - 80 1.1e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 390
AciI CCGC 2 cut(s) 4, 281
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 1 cut(s) 20
AdeI CACNNNGTG 1 cut(s) 334
AfaI GTAC 1 cut(s) 431
AfiI CCNNNNNNNGG 1 cut(s) 246
AgeI ACCGGT 1 cut(s) 490
AgsI TTSAA 2 cut(s) 179, 254
AjnI CCWGG 1 cut(s) 497
AluBI AGCT 2 cut(s) 320, 344
AluI AGCT 2 cut(s) 320, 344
Alw26I GTCTC 3 cut(s) 277, 344, 452
AlwNI CAGNNNCTG 1 cut(s) 347
AoxI GGCC 2 cut(s) 237, 500
ApeKI GCWGC 4 cut(s) 119, 320, 323, 341
ApoI RAATTY 1 cut(s) 20
AsiGI ACCGGT 1 cut(s) 490
Asp700I GAANNNNTTC 1 cut(s) 249
BbvI GCAGC 4 cut(s) 106, 307, 310, 353
BccI CCATC 1 cut(s) 416
BciT130I CCWGG 1 cut(s) 499
BcoDI GTCTC 3 cut(s) 277, 344, 452
BfaI CTAG 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 5 cut(s) 5, 120, 321, 324, 342
BlsI GCNGC 5 cut(s) 6, 121, 322, 325, 343
BmcAI AGTACT 1 cut(s) 431
Bme1390I CCNGG 1 cut(s) 499
BmiI GGNNCC 3 cut(s) 92, 266, 489
BmrFI CCNGG 1 cut(s) 499
BmsI GCATC 2 cut(s) 400, 486
BoxI GACNNNNGTC 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 3 cut(s) 112, 123, 240
BsaWI WCCGGW 1 cut(s) 490
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse118I RCCGGY 1 cut(s) 490
Bse3DI GCAATG 2 cut(s) 297, 393
BseBI CCWGG 1 cut(s) 499
BseDI CCNNGG 3 cut(s) 112, 123, 240
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMI GCAATG 2 cut(s) 297, 393
BseMII CTCAG 2 cut(s) 288, 339
BseXI GCAGC 4 cut(s) 106, 307, 310, 353
Bsh1236I CGCG 1 cut(s) 390
BshFI GGCC 2 cut(s) 239, 502
BshTI ACCGGT 1 cut(s) 490
BsiSI CCGG 1 cut(s) 491
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 246
BsmAI GTCTC 3 cut(s) 277, 344, 452
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 2 cut(s) 239, 502
Bso31I GGTCTC 1 cut(s) 452
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 2 cut(s) 4, 281
BspANI GGCC 2 cut(s) 239, 502
BspCNI CTCAG 2 cut(s) 287, 340
BspFNI CGCG 1 cut(s) 390
BspLI GGNNCC 3 cut(s) 92, 266, 489
BspTNI GGTCTC 1 cut(s) 452
BsrDI GCAATG 2 cut(s) 297, 393
BsrFI RCCGGY 1 cut(s) 490
BssAI RCCGGY 1 cut(s) 490
BssECI CCNNGG 3 cut(s) 112, 123, 240
BssT1I CCWWGG 3 cut(s) 112, 123, 240
Bst2UI CCWGG 1 cut(s) 499
Bst4CI ACNGT 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 3 cut(s) 274, 348, 435
BstDSI CCRYGG 1 cut(s) 240
BstFNI CGCG 1 cut(s) 390
BstMAI GTCTC 3 cut(s) 277, 344, 452
BstMWI GCNNNNNNNGC 4 cut(s) 13, 116, 287, 377
BstNI CCWGG 1 cut(s) 499
BstPAI GACNNNNGTC 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 497
BstSFI CTRYAG 1 cut(s) 315
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 4 cut(s) 106, 307, 310, 353
BsuRI GGCC 2 cut(s) 239, 502
BtgI CCRYGG 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 337, 479
Cac8I GCNNGC 1 cut(s) 382
CaiI CAGNNNCTG 1 cut(s) 347
Cfr10I RCCGGY 1 cut(s) 490
Csp6I GTAC 1 cut(s) 430
CspAI ACCGGT 1 cut(s) 490
CviAII CATG 6 cut(s) 17, 87, 241, 269, 286, 508
CviJI RGCY 9 cut(s) 7, 39, 65, 239, 250, 267, 320, 344, 502
CviKI_1 RGCY 9 cut(s) 7, 39, 65, 239, 250, 267, 320, 344, 502
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 3 cut(s) 274, 348, 435
DraIII CACNNNGTG 1 cut(s) 334
EaeI YGGCCR 1 cut(s) 237
Eco130I CCWWGG 3 cut(s) 112, 123, 240
Eco31I GGTCTC 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 497
EcoT14I CCWWGG 3 cut(s) 112, 123, 240
ErhI CCWWGG 3 cut(s) 112, 123, 240
FaeI CATG 6 cut(s) 20, 90, 244, 272, 289, 511
FaqI GGGAC 1 cut(s) 185
FatI CATG 6 cut(s) 16, 86, 240, 268, 285, 507
Fnu4HI GCNGC 5 cut(s) 5, 120, 321, 324, 342
Fsp4HI GCNGC 5 cut(s) 5, 120, 321, 324, 342
FspBI CTAG 1 cut(s) 131
GluI GCNGC 5 cut(s) 5, 120, 321, 324, 342
HaeIII GGCC 2 cut(s) 239, 502
HapII CCGG 1 cut(s) 491
Hin1II CATG 6 cut(s) 20, 90, 244, 272, 289, 511
HinfI GANTC 2 cut(s) 200, 538
HpaII CCGG 1 cut(s) 491
Hpy188I TCNGA 2 cut(s) 205, 277
Hpy188III TCNNGA 2 cut(s) 197, 347
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4V TGCA 5 cut(s) 16, 341, 398, 467, 477
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 116, 287, 377
HpyF3I CTNAG 3 cut(s) 274, 348, 435
Hsp92II CATG 6 cut(s) 20, 90, 244, 272, 289, 511
LmnI GCTCC 3 cut(s) 264, 349, 532
LpnPI CCDG 9 cut(s) 53, 107, 327, 360, 394, 427, 484, 504, 511
Lsp1109I GCAGC 4 cut(s) 106, 307, 310, 353
LweI GCATC 2 cut(s) 400, 486
MaeI CTAG 1 cut(s) 131
MboII GAAGA 2 cut(s) 115, 131
MluCI AATT 2 cut(s) 20, 468
MnlI CCTC 3 cut(s) 145, 292, 508
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 1 cut(s) 459
MslI CAYNNNNRTG 4 cut(s) 54, 147, 290, 420
MspI CCGG 1 cut(s) 491
MspR9I CCNGG 1 cut(s) 499
MvaI CCWGG 1 cut(s) 499
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 4 cut(s) 13, 116, 287, 377
NcoI CCATGG 1 cut(s) 240
NlaIII CATG 6 cut(s) 20, 90, 244, 272, 289, 511
NlaIV GGNNCC 3 cut(s) 92, 266, 489
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 2 cut(s) 200, 538
PflFI GACNNNGTC 1 cut(s) 305
PinAI ACCGGT 1 cut(s) 490
PkrI GCNGC 5 cut(s) 6, 121, 322, 325, 343
PshAI GACNNNNGTC 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 497
PspGI CCWGG 1 cut(s) 497
PspN4I GGNNCC 3 cut(s) 92, 266, 489
PstNI CAGNNNCTG 1 cut(s) 347
PsyI GACNNNGTC 1 cut(s) 305
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
RseI CAYNNNNRTG 4 cut(s) 54, 147, 290, 420
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 5 cut(s) 5, 120, 321, 324, 342
ScaI AGTACT 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 499
SetI ASST 6 cut(s) 259, 309, 322, 346, 465, 519
SfaNI GCATC 2 cut(s) 400, 486
SfcI CTRYAG 1 cut(s) 315
SmiMI CAYNNNNRTG 4 cut(s) 54, 147, 290, 420
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
Sse9I AATT 2 cut(s) 20, 468
SsiI CCGC 2 cut(s) 4, 281
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 497
StyI CCWWGG 3 cut(s) 112, 123, 240
TaaI ACNGT 1 cut(s) 332
TasI AATT 2 cut(s) 20, 468
TatI WGTACW 1 cut(s) 429
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 200, 538
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TscAI CASTG 2 cut(s) 337, 479
TseI GCWGC 4 cut(s) 119, 320, 323, 341
TspDTI ATGAA 7 cut(s) 33, 38, 72, 75, 116, 131, 524
TspRI CASTG 2 cut(s) 337, 479
Tth111I GACNNNGTC 1 cut(s) 305
XapI RAATTY 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 1 cut(s) 131
ZrmI AGTACT 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.