Rh1DG335700
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017365
Physical Location & Seq
Forward (+)
56147566 .. 56148631
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG335700.1

Sequence Viewer

Length: 657 bp
ATGACTAGTGGTGGACTTCGCACAAGCGTGAAGGGTTACCTCATTGCACAACGTGTCACTGTGGCACTGGAAATAAACACAGTGCATGACGATGAGACGAGCATAAATGCAACTAGCAATTCCACTGCTGCTGATTCTGTGGATCATCCACCTCCACTTTCAGTTCGGGAGAGTTCAGCTTCATACGGGCCCAGTATCTGTGATGGAAATATTCCTTGTTTCCCAATGTGGAGCTCTGCTGCAAAGAGCATGGCTTCATATGGTGTTAGAACCAAATCTAATAGTCTGCCTCACAATGTTCCTTCATCTCCTCAGTCAGAGGTTGAGATCCCTCAGACAGAGGTCGTGACCTTGCAGTCCTTCCATTTGAGGAGCTTCCACTTTAATGAGCTGAAAACAGCCACCACAAACTTCTGTCGACCTGATAGTATTATGGCTCAAGGTGGTCTTGGTTCTGTCTATAAGGGGTGGATTTATGAGCATTCGTTCACAGCTGGCGAGCCTGGTACCAGCATTGCCGTTGTAATAAAGAGGTTTAGCCAACAAAGGACCCTGCAGAGTCAGAAGGACTGGTTGGTGAGTATCATTTCTATCTTTCATGGTCAAATGTGCTTTCTCCATAACTTGTTAGGCCTCCCAATTGCTCAATTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

218

Amino Acids

23.75

Weight (kDa)

6.7

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 355
Acc65I GGTACC 1 cut(s) 506
AccB1I GGYRCC 1 cut(s) 506
AccI GTMKAC 1 cut(s) 418
AclWI GGATC 2 cut(s) 150, 322
AdeI CACNNNGTG 1 cut(s) 53
AfaI GTAC 1 cut(s) 508
AflIII ACRYGT 1 cut(s) 52
AhlI ACTAGT 1 cut(s) 5
AjnI CCWGG 1 cut(s) 502
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 5 cut(s) 179, 234, 375, 391, 494
AluI AGCT 5 cut(s) 179, 234, 375, 391, 494
Alw21I GWGCWC 1 cut(s) 236
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 2 cut(s) 150, 322
AlwNI CAGNNNCTG 1 cut(s) 198
AoxI GGCC 2 cut(s) 188, 631
ApaI GGGCCC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 128, 239
Asp718I GGTACC 1 cut(s) 506
AspS9I GGNCC 3 cut(s) 188, 189, 549
AsuHPI GGTGA 1 cut(s) 589
AvaII GGWCC 1 cut(s) 549
BaeGI GKGCMC 1 cut(s) 192
BanI GGYRCC 1 cut(s) 506
BanII GRGCYC 2 cut(s) 192, 236
Bbv12I GWGCWC 1 cut(s) 236
BbvI GCAGC 2 cut(s) 115, 226
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 503
BciT130I CCWGG 1 cut(s) 504
BcoDI GTCTC 1 cut(s) 89
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 2 cut(s) 6, 114
BfmI CTRYAG 1 cut(s) 554
BisI GCNGC 2 cut(s) 129, 240
BlsI GCNGC 2 cut(s) 130, 241
Bme1390I CCNGG 1 cut(s) 504
Bme18I GGWCC 1 cut(s) 549
BmgT120I GGNCC 3 cut(s) 188, 189, 549
BmiI GGNNCC 3 cut(s) 190, 508, 551
BmrFI CCNGG 1 cut(s) 504
BmrI ACTGGG 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 186
BoxI GACNNNNGTC 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 423
Bse1I ACTGG 3 cut(s) 72, 192, 575
Bse3DI GCAATG 2 cut(s) 42, 513
BseBI CCWGG 1 cut(s) 504
BseGI GGATG 1 cut(s) 145
BseMI GCAATG 2 cut(s) 42, 513
BseMII CTCAG 2 cut(s) 326, 347
BseNI ACTGG 3 cut(s) 72, 192, 575
BseRI GAGGAG 2 cut(s) 300, 385
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 2 cut(s) 115, 226
BshFI GGCC 2 cut(s) 190, 633
BshNI GGYRCC 1 cut(s) 506
BsiHKAI GWGCWC 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 89
BsmBI CGTCTC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 2 cut(s) 190, 633
Bsp120I GGGCCC 1 cut(s) 188
Bsp1286I GDGCHC 2 cut(s) 192, 236
Bsp143I GATC 2 cut(s) 142, 327
BspANI GGCC 2 cut(s) 190, 633
BspCNI CTCAG 2 cut(s) 325, 346
BspLI GGNNCC 3 cut(s) 190, 508, 551
BspMAI CTGCAG 1 cut(s) 558
BspPI GGATC 2 cut(s) 150, 322
BspT107I GGYRCC 1 cut(s) 506
BsrDI GCAATG 2 cut(s) 42, 513
BsrI ACTGG 3 cut(s) 72, 192, 575
BssMI GATC 2 cut(s) 142, 327
Bst2UI CCWGG 1 cut(s) 504
Bst4CI ACNGT 2 cut(s) 61, 82
BstC8I GCNNGC 2 cut(s) 496, 500
BstDEI CTNAG 2 cut(s) 312, 333
BstEII GGTNACC 1 cut(s) 35
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 2 cut(s) 145, 330
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 2 cut(s) 142, 327
BstNI CCWGG 1 cut(s) 504
BstPAI GACNNNNGTC 1 cut(s) 341
BstPI GGTNACC 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 502
BstSFI CTRYAG 1 cut(s) 554
BstSLI GKGCMC 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 115, 226
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BsuRI GGCC 2 cut(s) 190, 633
BtsCI GGATG 1 cut(s) 145
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 4 cut(s) 57, 65, 87, 123
Cac8I GCNNGC 2 cut(s) 496, 500
CaiI CAGNNNCTG 1 cut(s) 198
Cfr13I GGNCC 3 cut(s) 188, 189, 549
Csp6I GTAC 1 cut(s) 507
CviAII CATG 3 cut(s) 86, 250, 599
CviQI GTAC 1 cut(s) 507
DdeI CTNAG 2 cut(s) 312, 333
DpnI GATC 2 cut(s) 144, 329
DpnII GATC 2 cut(s) 142, 327
DraIII CACNNNGTG 1 cut(s) 53
DrdI GACNNNNNNGTC 1 cut(s) 355
DseDI GACNNNNNNGTC 1 cut(s) 355
Ecl136II GAGCTC 1 cut(s) 234
Eco147I AGGCCT 1 cut(s) 633
Eco24I GRGCYC 2 cut(s) 192, 236
Eco47I GGWCC 1 cut(s) 549
Eco53kI GAGCTC 1 cut(s) 234
Eco91I GGTNACC 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 234
EcoO109I RGGNCCY 1 cut(s) 549
EcoO65I GGTNACC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 502
EcoT38I GRGCYC 2 cut(s) 192, 236
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 3 cut(s) 89, 253, 602
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FatI CATG 3 cut(s) 85, 249, 598
FauNDI CATATG 1 cut(s) 259
FblI GTMKAC 1 cut(s) 418
Fnu4HI GCNGC 2 cut(s) 129, 240
FokI GGATG 1 cut(s) 132
FriOI GRGCYC 2 cut(s) 192, 236
Fsp4HI GCNGC 2 cut(s) 129, 240
FspBI CTAG 2 cut(s) 6, 114
GluI GCNGC 2 cut(s) 129, 240
HaeIII GGCC 2 cut(s) 190, 633
Hin1II CATG 3 cut(s) 89, 253, 602
HincII GTYRAC 1 cut(s) 419
HindII GTYRAC 1 cut(s) 419
HinfI GANTC 2 cut(s) 134, 559
HphI GGTGA 1 cut(s) 589
Hpy166II GTNNAC 3 cut(s) 14, 419, 489
Hpy188I TCNGA 3 cut(s) 319, 336, 564
Hpy188III TCNNGA 2 cut(s) 167, 346
Hpy8I GTNNAC 3 cut(s) 14, 419, 489
HpyAV CCTTC 4 cut(s) 25, 312, 370, 559
HpyCH4III ACNGT 2 cut(s) 61, 82
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 6 cut(s) 47, 85, 110, 242, 355, 556
HpyF3I CTNAG 2 cut(s) 312, 333
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 3 cut(s) 89, 253, 602
KpnI GGTACC 1 cut(s) 510
Kzo9I GATC 2 cut(s) 142, 327
LmnI GCTCC 2 cut(s) 231, 372
LpnPI CCDG 9 cut(s) 53, 205, 435, 480, 489, 516, 523, 556, 566
Lsp1109I GCAGC 2 cut(s) 115, 226
MaeI CTAG 2 cut(s) 6, 114
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 3 cut(s) 35, 55, 346
MalI GATC 2 cut(s) 144, 329
MboI GATC 2 cut(s) 142, 327
MfeI CAATTG 1 cut(s) 639
MflI RGATCY 1 cut(s) 327
MhlI GDGCHC 2 cut(s) 192, 236
MluCI AATT 3 cut(s) 118, 639, 647
MlyI GAGTC 1 cut(s) 568
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 3 cut(s) 26, 90, 384
MspA1I CMGCKG 1 cut(s) 494
MspR9I CCNGG 1 cut(s) 504
MunI CAATTG 1 cut(s) 639
Mva1269I GAATGC 1 cut(s) 481
MvaI CCWGG 1 cut(s) 504
NdeI CATATG 1 cut(s) 259
NdeII GATC 2 cut(s) 142, 327
NlaIII CATG 3 cut(s) 89, 253, 602
NlaIV GGNNCC 3 cut(s) 190, 508, 551
NmuCI GTSAC 2 cut(s) 55, 346
OliI CACNNNNGTG 1 cut(s) 26
PceI AGGCCT 1 cut(s) 633
PctI GAATGC 1 cut(s) 481
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 130, 241
PleI GAGTC 1 cut(s) 567
PpsI GAGTC 1 cut(s) 567
PpuMI RGGWCCY 1 cut(s) 549
PshAI GACNNNNGTC 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 502
PspEI GGTNACC 1 cut(s) 35
PspGI CCWGG 1 cut(s) 502
PspN4I GGNNCC 3 cut(s) 190, 508, 551
PspOMI GGGCCC 1 cut(s) 188
PspPI GGNCC 3 cut(s) 188, 189, 549
PspPPI RGGWCCY 1 cut(s) 549
PstI CTGCAG 1 cut(s) 558
PstNI CAGNNNCTG 1 cut(s) 198
PsuI RGATCY 1 cut(s) 327
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 1 cut(s) 508
RsaNI GTAC 1 cut(s) 507
RseI CAYNNNNRTG 3 cut(s) 26, 90, 384
SacI GAGCTC 1 cut(s) 236
SalI GTCGAC 1 cut(s) 417
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 2 cut(s) 129, 240
Sau3AI GATC 2 cut(s) 142, 327
Sau96I GGNCC 3 cut(s) 188, 189, 549
SchI GAGTC 1 cut(s) 568
ScrFI CCNGG 1 cut(s) 504
SduI GDGCHC 2 cut(s) 192, 236
SfcI CTRYAG 1 cut(s) 554
SinI GGWCC 1 cut(s) 549
SmiMI CAYNNNNRTG 3 cut(s) 26, 90, 384
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
SpeI ACTAGT 1 cut(s) 5
Sse9I AATT 3 cut(s) 118, 639, 647
SseBI AGGCCT 1 cut(s) 633
SspI AATATT 1 cut(s) 211
SspMI CTAG 2 cut(s) 6, 114
SstI GAGCTC 1 cut(s) 236
StuI AGGCCT 1 cut(s) 633
StyD4I CCNGG 1 cut(s) 502
TaaI ACNGT 2 cut(s) 61, 82
TaiI ACGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 418
TasI AATT 3 cut(s) 118, 639, 647
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 4 cut(s) 64, 72, 87, 130
TseFI GTSAC 2 cut(s) 55, 346
TseI GCWGC 2 cut(s) 128, 239
Tsp45I GTSAC 2 cut(s) 55, 346
TspDTI ATGAA 4 cut(s) 171, 246, 294, 587
TspRI CASTG 4 cut(s) 64, 72, 87, 130
VpaK11BI GGWCC 1 cut(s) 549
XmiI GTMKAC 1 cut(s) 418
XspI CTAG 2 cut(s) 6, 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.