Rh1DG335800
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017365
Physical Location & Seq
Forward (+)
56148890 .. 56150094
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG335800.1

Sequence Viewer

Length: 696 bp
ATGCGGCTTCGGGTGCATGAATTTATCTCTCAAGGAAGCCTGAACATTCATCTATATGAAAGGGCTTCTCTCTATAAACGACTTTCATGGAACCAGCGTATGAAGATTGCCCTTGGTGCTGCCAAGGGTCTAGCATTTCTTCATAGTAATGAGGCAAAAGTGATATATGGGGACTTTGAAACTTCCAATATCCTTCTTGATTCAGACTATAATGCGAAACTCTATGGTTATGGTTCGGCCATGGAAAGGCTTCAAGGTTATAGGAGCCATGTCTCAGAAGCGGACATGGCTATGTATGAGGAAAAGGTCTTTTTTGCAGCTGCTGCTCGCAGTGTGTATGCAGCTCCTGAGACTTCTAATGATCACTTAACCCCGAAAAGTGATGTATACAGTTATGGGGTCGTTCTGCTCGAAATGTTATCCGGCAGACGAGCTTTCGACAATAGCAGGTCCCTTAGAGAAGAAACTTTACTTCAATTTGCGAAAAACATTTCTTCGCAAGGTGGTTCTGCCAAGCATGGCAGCAAACGCGACGTTGCACACTTTTTTGATGCTCATATTGATGGGCAGTACTCTCAGGACAGGGGTCTCAAAGCACTTAACCTTGCAATTCAGTGCATCTCAAAGGAACCGGAGTCCAGGCCAAACATGAATGAGGTGGTAGAAATATTGGAGCAGATTCAGTCATCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

231

Amino Acids

26.04

Weight (kDa)

7.11

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 5 - 222 4.5e-19 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 5 - 224 3.6e-16 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 438
AccI GTMKAC 1 cut(s) 387
AccII CGCG 1 cut(s) 531
AciI CCGC 2 cut(s) 4, 281
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 1 cut(s) 20
AfaI GTAC 1 cut(s) 572
AfiI CCNNNNNNNGG 1 cut(s) 246
AgsI TTSAA 3 cut(s) 179, 254, 476
AjnI CCWGG 1 cut(s) 638
AluBI AGCT 3 cut(s) 320, 344, 434
AluI AGCT 3 cut(s) 320, 344, 434
Alw26I GTCTC 3 cut(s) 277, 344, 593
AlwNI CAGNNNCTG 2 cut(s) 323, 347
AoxI GGCC 2 cut(s) 237, 641
ApeKI GCWGC 6 cut(s) 119, 317, 320, 323, 341, 522
ApoI RAATTY 1 cut(s) 20
Asp700I GAANNNNTTC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 450
AvaII GGWCC 1 cut(s) 450
BarI GAAGNNNNNNTAC 2 cut(s) 453, 485
BbvI GCAGC 6 cut(s) 106, 307, 310, 329, 353, 534
BccI CCATC 1 cut(s) 557
BciT130I CCWGG 1 cut(s) 640
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 3 cut(s) 277, 344, 593
BfaI CTAG 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 438
BisI GCNGC 7 cut(s) 5, 120, 318, 321, 324, 342, 523
BlsI GCNGC 7 cut(s) 6, 121, 319, 322, 325, 343, 524
BmcAI AGTACT 1 cut(s) 572
Bme1390I CCNGG 1 cut(s) 640
Bme18I GGWCC 1 cut(s) 450
BmgT120I GGNCC 1 cut(s) 450
BmiI GGNNCC 4 cut(s) 92, 266, 452, 630
BmrFI CCNGG 1 cut(s) 640
BmsI GCATC 2 cut(s) 541, 627
BoxI GACNNNNGTC 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 593
BsaJI CCNNGG 3 cut(s) 112, 123, 240
BsaWI WCCGGW 1 cut(s) 631
Bsc4I CCNNNNNNNGG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 640
BseDI CCNNGG 3 cut(s) 112, 123, 240
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMII CTCAG 3 cut(s) 288, 339, 590
BseXI GCAGC 6 cut(s) 106, 307, 310, 329, 353, 534
Bsh1236I CGCG 1 cut(s) 531
BshFI GGCC 2 cut(s) 239, 643
BsiSI CCGG 2 cut(s) 423, 632
BslFI GGGAC 2 cut(s) 185, 436
BslI CCNNNNNNNGG 1 cut(s) 246
BsmAI GTCTC 3 cut(s) 277, 344, 593
BsmFI GGGAC 2 cut(s) 185, 436
BsnI GGCC 2 cut(s) 239, 643
Bso31I GGTCTC 1 cut(s) 593
Bsp143I GATC 1 cut(s) 361
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 2 cut(s) 4, 281
BspANI GGCC 2 cut(s) 239, 643
BspCNI CTCAG 3 cut(s) 287, 340, 589
BspFNI CGCG 1 cut(s) 531
BspLI GGNNCC 4 cut(s) 92, 266, 452, 630
BspMI ACCTGC 1 cut(s) 438
BspTNI GGTCTC 1 cut(s) 593
BssECI CCNNGG 3 cut(s) 112, 123, 240
BssMI GATC 1 cut(s) 361
BssNAI GTATAC 1 cut(s) 388
BssT1I CCWWGG 3 cut(s) 112, 123, 240
Bst1107I GTATAC 1 cut(s) 388
Bst2UI CCWGG 1 cut(s) 640
Bst4CI ACNGT 1 cut(s) 392
BstAPI GCANNNNNTGC 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 4 cut(s) 274, 348, 455, 576
BstDSI CCRYGG 1 cut(s) 240
BstFNI CGCG 1 cut(s) 531
BstKTI GATC 1 cut(s) 364
BstMAI GTCTC 3 cut(s) 277, 344, 593
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 5 cut(s) 13, 116, 287, 323, 528
BstNI CCWGG 1 cut(s) 640
BstPAI GACNNNNGTC 1 cut(s) 585
BstSCI CCNGG 1 cut(s) 638
BstUI CGCG 1 cut(s) 531
BstV1I GCAGC 6 cut(s) 106, 307, 310, 329, 353, 534
BstZ17I GTATAC 1 cut(s) 388
BsuRI GGCC 2 cut(s) 239, 643
BtgI CCRYGG 1 cut(s) 240
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 2 cut(s) 337, 620
BveI ACCTGC 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 328
CaiI CAGNNNCTG 2 cut(s) 323, 347
Cfr13I GGNCC 1 cut(s) 450
Csp6I GTAC 1 cut(s) 571
CviAII CATG 7 cut(s) 17, 87, 241, 269, 286, 518, 649
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 4 cut(s) 274, 348, 455, 576
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
EaeI YGGCCR 1 cut(s) 237
Eco130I CCWWGG 3 cut(s) 112, 123, 240
Eco31I GGTCTC 1 cut(s) 593
Eco47I GGWCC 1 cut(s) 450
EcoO109I RGGNCCY 1 cut(s) 450
EcoRII CCWGG 1 cut(s) 638
EcoT14I CCWWGG 3 cut(s) 112, 123, 240
ErhI CCWWGG 3 cut(s) 112, 123, 240
FaeI CATG 7 cut(s) 20, 90, 244, 272, 289, 521, 652
FaqI GGGAC 2 cut(s) 185, 436
FatI CATG 7 cut(s) 16, 86, 240, 268, 285, 517, 648
FbaI TGATCA 1 cut(s) 361
FblI GTMKAC 1 cut(s) 387
Fnu4HI GCNGC 7 cut(s) 5, 120, 318, 321, 324, 342, 523
Fsp4HI GCNGC 7 cut(s) 5, 120, 318, 321, 324, 342, 523
FspBI CTAG 1 cut(s) 131
GluI GCNGC 7 cut(s) 5, 120, 318, 321, 324, 342, 523
HaeIII GGCC 2 cut(s) 239, 643
HapII CCGG 2 cut(s) 423, 632
Hin1II CATG 7 cut(s) 20, 90, 244, 272, 289, 521, 652
HinfI GANTC 3 cut(s) 200, 635, 679
HpaII CCGG 2 cut(s) 423, 632
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 2 cut(s) 205, 277
Hpy188III TCNNGA 3 cut(s) 197, 347, 578
Hpy8I GTNNAC 1 cut(s) 388
Hpy99I CGWCG 1 cut(s) 536
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 6 cut(s) 16, 317, 341, 539, 608, 618
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 116, 287, 323, 528
HpyF3I CTNAG 4 cut(s) 274, 348, 455, 576
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 7 cut(s) 20, 90, 244, 272, 289, 521, 652
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 1 cut(s) 361
LmnI GCTCC 3 cut(s) 264, 349, 673
Lsp1109I GCAGC 6 cut(s) 106, 307, 310, 329, 353, 534
LweI GCATC 2 cut(s) 541, 627
MaeI CTAG 1 cut(s) 131
MaeII ACGT 1 cut(s) 534
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 4 cut(s) 115, 131, 473, 486
MluCI AATT 3 cut(s) 20, 476, 609
MlyI GAGTC 1 cut(s) 644
MnlI CCTC 3 cut(s) 145, 292, 649
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 2 cut(s) 368, 600
MslI CAYNNNNRTG 5 cut(s) 54, 147, 290, 561, 691
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 2 cut(s) 423, 632
MspR9I CCNGG 1 cut(s) 640
MvaI CCWGG 1 cut(s) 640
MvnI CGCG 1 cut(s) 531
MwoI GCNNNNNNNGC 5 cut(s) 13, 116, 287, 323, 528
NcoI CCATGG 1 cut(s) 240
NdeII GATC 1 cut(s) 361
NlaIII CATG 7 cut(s) 20, 90, 244, 272, 289, 521, 652
NlaIV GGNNCC 4 cut(s) 92, 266, 452, 630
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 2 cut(s) 200, 679
PkrI GCNGC 7 cut(s) 6, 121, 319, 322, 325, 343, 524
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
PpuMI RGGWCCY 1 cut(s) 450
PshAI GACNNNNGTC 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 638
PspGI CCWGG 1 cut(s) 638
PspN4I GGNNCC 4 cut(s) 92, 266, 452, 630
PspPI GGNCC 1 cut(s) 450
PspPPI RGGWCCY 1 cut(s) 450
PstNI CAGNNNCTG 2 cut(s) 323, 347
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
RseI CAYNNNNRTG 5 cut(s) 54, 147, 290, 561, 691
SaqAI TTAA 2 cut(s) 368, 600
SatI GCNGC 7 cut(s) 5, 120, 318, 321, 324, 342, 523
Sau3AI GATC 1 cut(s) 361
Sau96I GGNCC 1 cut(s) 450
ScaI AGTACT 1 cut(s) 572
SchI GAGTC 1 cut(s) 644
ScrFI CCNGG 1 cut(s) 640
SfaNI GCATC 2 cut(s) 541, 627
SinI GGWCC 1 cut(s) 450
SmiMI CAYNNNNRTG 5 cut(s) 54, 147, 290, 561, 691
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
Sse9I AATT 3 cut(s) 20, 476, 609
SsiI CCGC 2 cut(s) 4, 281
SspI AATATT 1 cut(s) 669
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 638
StyI CCWWGG 3 cut(s) 112, 123, 240
TaaI ACNGT 1 cut(s) 392
TaiI ACGT 1 cut(s) 537
TaqI TCGA 2 cut(s) 411, 438
TasI AATT 3 cut(s) 20, 476, 609
TatI WGTACW 1 cut(s) 570
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 200, 679
Tru1I TTAA 2 cut(s) 368, 600
Tru9I TTAA 2 cut(s) 368, 600
TscAI CASTG 2 cut(s) 337, 620
TseI GCWGC 6 cut(s) 119, 317, 320, 323, 341, 522
TspDTI ATGAA 7 cut(s) 33, 38, 72, 75, 116, 131, 665
TspRI CASTG 2 cut(s) 337, 620
VpaK11BI GGWCC 1 cut(s) 450
XapI RAATTY 1 cut(s) 20
XmiI GTMKAC 1 cut(s) 387
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 1 cut(s) 131
ZrmI AGTACT 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.