Rmu_sc0011000.1_g000011
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011000.1
Physical Location & Seq
Forward (+)
48532 .. 51072
2541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011000.1_g000011.1.cds

Sequence Viewer

Length: 1278 bp
atgactagtggtggacttcgcacaagcgtgaagggttacctgattgcacaacgcgtcactgtagcacaggaaataaacacagtgcatgacgatgagacgagcataaatgtaactagcaattccactgctgctgattctgtggatcatccacctccactttcagttcccgagacttcagcttcatacgggctcagtatctgtgacggaaatattccttgtttcccaatgtggagctctgctgcaaagtcagaggttgagatccctcagacagaggtcgtgaccttgcagtccttccatttgaggagcttccactttaatgagctgaaaacagccaccacaaacttctgtcgacctgatagtattatggctcaaggtggtcttggttctgtttataaggggtggatttatgagcattcgttcacagctggcgagcctggtaccagcattgccgttgtaataaagaggtttagccaacaaaggaccctgcagagtcagaaggactggttgacagaagttagcttccttggacacttggaacacccaaatctggtaaaactgattggctactgcctaaaggatgacatgcggcttcgggtgcatgaatttatctctcaaggaagcctgaacattcatctatatgaaagggcttctctctataaacgactttcatggaaccagcgtatgaagattgcccttggtgctgccaagggtctagcatttcttcatagtaatgaggcaaaagtgatatatggggactttgaaacttccaatatccttcttgattcagactataatgccaaactctatggttatggttcggccatggaaaggcttcaaggttataggagccatgtctcagaagcggacatggctatgtatgaggaaaaggtcttttttgtagctgcggctcgcagtgtgtatgcagctcctgagacttctaatgatcacttaaccccgaaaagtgatgtatacagttatggggtcgttctgctcgaaatgttatccggcagacgagctttcgacaatagcaggtcccttagagaagaaactttacttcaatttgcgaaaaacatttcttcgcaaggtggttctgccaagcatggcagcaaacgcgacgttgcacacttttttgatgctcatattgatgggcagtactctcaggacaggggtctcaaagcacttaaccttgcaattcagtgcatctcaaaggaaccggagtccaggccaaacatgaatgaggtggtagaaatattggagcagattcagtcatcaaaatga
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

425

Amino Acids

47.31

Weight (kDa)

6.21

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 393
AasI GACNNNNNNGTC 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 1020
Acc65I GGTACC 1 cut(s) 437
AccB1I GGYRCC 1 cut(s) 437
AccI GTMKAC 2 cut(s) 349, 969
AccII CGCG 2 cut(s) 54, 1113
AciI CCGC 3 cut(s) 586, 863, 905
AclWI GGATC 2 cut(s) 150, 253
AcoI YGGCCR 1 cut(s) 819
AcsI RAATTY 1 cut(s) 602
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 2 cut(s) 439, 1154
AfiI CCNNNNNNNGG 2 cut(s) 547, 828
AflIII ACRYGT 1 cut(s) 52
AgsI TTSAA 3 cut(s) 761, 836, 1058
AhlI ACTAGT 1 cut(s) 5
AjnI CCWGG 2 cut(s) 433, 1220
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 9 cut(s) 179, 234, 306, 322, 425, 519, 902, 926, 1016
AluI AGCT 9 cut(s) 179, 234, 306, 322, 425, 519, 902, 926, 1016
Alw21I GWGCWC 1 cut(s) 236
Alw26I GTCTC 5 cut(s) 89, 164, 859, 926, 1175
AlwI GGATC 2 cut(s) 150, 253
AlwNI CAGNNNCTG 2 cut(s) 198, 929
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 2 cut(s) 819, 1223
ApeKI GCWGC 6 cut(s) 128, 239, 701, 902, 923, 1104
ApoI RAATTY 1 cut(s) 602
Asp700I GAANNNNTTC 1 cut(s) 831
Asp718I GGTACC 1 cut(s) 437
AspS9I GGNCC 2 cut(s) 480, 1032
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 2 cut(s) 480, 1032
BanI GGYRCC 1 cut(s) 437
BanII GRGCYC 2 cut(s) 192, 236
BarI GAAGNNNNNNTAC 2 cut(s) 1035, 1067
Bbv12I GWGCWC 1 cut(s) 236
BbvI GCAGC 6 cut(s) 115, 226, 688, 889, 935, 1116
BccI CCATC 1 cut(s) 1139
BceAI ACGGC 1 cut(s) 434
BciT130I CCWGG 2 cut(s) 435, 1222
BclI TGATCA 1 cut(s) 943
BcoDI GTCTC 5 cut(s) 89, 164, 859, 926, 1175
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 3 cut(s) 6, 114, 713
BfmI CTRYAG 2 cut(s) 60, 485
BfuAI ACCTGC 1 cut(s) 1020
BisI GCNGC 8 cut(s) 129, 240, 587, 702, 903, 906, 924, 1105
BlsI GCNGC 8 cut(s) 130, 241, 588, 703, 904, 907, 925, 1106
BmcAI AGTACT 1 cut(s) 1154
Bme1390I CCNGG 2 cut(s) 435, 1222
Bme18I GGWCC 2 cut(s) 480, 1032
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 480, 1032
BmiI GGNNCC 6 cut(s) 439, 482, 674, 848, 1034, 1212
BmrFI CCNGG 2 cut(s) 435, 1222
BmsI GCATC 2 cut(s) 1123, 1209
BoxI GACNNNNGTC 2 cut(s) 272, 1167
BpuEI CTTGAG 2 cut(s) 354, 597
BsaI GGTCTC 1 cut(s) 1175
BsaJI CCNNGG 4 cut(s) 523, 694, 705, 822
BsaWI WCCGGW 1 cut(s) 1213
Bsc4I CCNNNNNNNGG 2 cut(s) 547, 828
Bse1I ACTGG 1 cut(s) 506
Bse3DI GCAATG 1 cut(s) 444
BseBI CCWGG 2 cut(s) 435, 1222
BseDI CCNNGG 4 cut(s) 523, 694, 705, 822
BseGI GGATG 2 cut(s) 145, 583
BseLI CCNNNNNNNGG 2 cut(s) 547, 828
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 5 cut(s) 205, 278, 870, 921, 1172
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 1 cut(s) 316
BseXI GCAGC 6 cut(s) 115, 226, 688, 889, 935, 1116
Bsh1236I CGCG 2 cut(s) 54, 1113
BshFI GGCC 2 cut(s) 821, 1225
BshNI GGYRCC 1 cut(s) 437
BsiHKAI GWGCWC 1 cut(s) 236
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 2 cut(s) 1005, 1214
BslFI GGGAC 2 cut(s) 767, 1018
BslI CCNNNNNNNGG 2 cut(s) 547, 828
BsmAI GTCTC 5 cut(s) 89, 164, 859, 926, 1175
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 2 cut(s) 767, 1018
BsmI GAATGC 1 cut(s) 412
BsnI GGCC 2 cut(s) 821, 1225
Bso31I GGTCTC 1 cut(s) 1175
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 192, 236
Bsp143I GATC 3 cut(s) 142, 258, 943
Bsp19I CCATGG 1 cut(s) 822
BspACI CCGC 3 cut(s) 586, 863, 905
BspANI GGCC 2 cut(s) 821, 1225
BspCNI CTCAG 5 cut(s) 204, 277, 869, 922, 1171
BspFNI CGCG 2 cut(s) 54, 1113
BspLI GGNNCC 6 cut(s) 439, 482, 674, 848, 1034, 1212
BspMAI CTGCAG 1 cut(s) 489
BspMI ACCTGC 1 cut(s) 1020
BspPI GGATC 2 cut(s) 150, 253
BspT107I GGYRCC 1 cut(s) 437
BspTNI GGTCTC 1 cut(s) 1175
BsrDI GCAATG 1 cut(s) 444
BsrI ACTGG 1 cut(s) 506
BssECI CCNNGG 4 cut(s) 523, 694, 705, 822
BssMI GATC 3 cut(s) 142, 258, 943
BssNAI GTATAC 1 cut(s) 970
BssT1I CCWWGG 4 cut(s) 523, 694, 705, 822
Bst1107I GTATAC 1 cut(s) 970
Bst2UI CCWGG 2 cut(s) 435, 1222
Bst4CI ACNGT 3 cut(s) 61, 82, 974
BstC8I GCNNGC 3 cut(s) 427, 431, 910
BstDEI CTNAG 6 cut(s) 191, 264, 856, 930, 1037, 1158
BstDSI CCRYGG 1 cut(s) 822
BstEII GGTNACC 1 cut(s) 35
BstF5I GGATG 2 cut(s) 145, 583
BstFNI CGCG 2 cut(s) 54, 1113
BstKTI GATC 3 cut(s) 145, 261, 946
BstMAI GTCTC 5 cut(s) 89, 164, 859, 926, 1175
BstMBI GATC 3 cut(s) 142, 258, 943
BstMWI GCNNNNNNNGC 4 cut(s) 595, 698, 869, 1110
BstNI CCWGG 2 cut(s) 435, 1222
BstNSI RCATGY 1 cut(s) 586
BstPAI GACNNNNGTC 2 cut(s) 272, 1167
BstPI GGTNACC 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 433, 1220
BstSFI CTRYAG 2 cut(s) 60, 485
BstUI CGCG 2 cut(s) 54, 1113
BstV1I GCAGC 6 cut(s) 115, 226, 688, 889, 935, 1116
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
BstZ17I GTATAC 1 cut(s) 970
BsuRI GGCC 2 cut(s) 821, 1225
BtgI CCRYGG 1 cut(s) 822
BtsCI GGATG 2 cut(s) 145, 583
BtsI GCAGTG 2 cut(s) 123, 919
BtsIMutI CAGTG 5 cut(s) 57, 87, 123, 919, 1202
BveI ACCTGC 1 cut(s) 1020
Cac8I GCNNGC 3 cut(s) 427, 431, 910
CaiI CAGNNNCTG 2 cut(s) 198, 929
Cfr13I GGNCC 2 cut(s) 480, 1032
CseI GACGC 1 cut(s) 43
Csp6I GTAC 2 cut(s) 438, 1153
CviAII CATG 9 cut(s) 86, 583, 599, 669, 823, 851, 868, 1100, 1231
CviQI GTAC 2 cut(s) 438, 1153
DdeI CTNAG 6 cut(s) 191, 264, 856, 930, 1037, 1158
DpnI GATC 3 cut(s) 144, 260, 945
DpnII GATC 3 cut(s) 142, 258, 943
DrdI GACNNNNNNGTC 1 cut(s) 286
DseDI GACNNNNNNGTC 1 cut(s) 286
EaeI YGGCCR 1 cut(s) 819
Ecl136II GAGCTC 1 cut(s) 234
Eco130I CCWWGG 4 cut(s) 523, 694, 705, 822
Eco24I GRGCYC 2 cut(s) 192, 236
Eco31I GGTCTC 1 cut(s) 1175
Eco47I GGWCC 2 cut(s) 480, 1032
Eco53kI GAGCTC 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 167
Eco91I GGTNACC 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 234
EcoO109I RGGNCCY 2 cut(s) 480, 1032
EcoO65I GGTNACC 1 cut(s) 35
EcoRII CCWGG 2 cut(s) 433, 1220
EcoT14I CCWWGG 4 cut(s) 523, 694, 705, 822
EcoT38I GRGCYC 2 cut(s) 192, 236
ErhI CCWWGG 4 cut(s) 523, 694, 705, 822
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 9 cut(s) 89, 586, 602, 672, 826, 854, 871, 1103, 1234
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FaqI GGGAC 2 cut(s) 767, 1018
FatI CATG 9 cut(s) 85, 582, 598, 668, 822, 850, 867, 1099, 1230
FbaI TGATCA 1 cut(s) 943
FblI GTMKAC 2 cut(s) 349, 969
Fnu4HI GCNGC 8 cut(s) 129, 240, 587, 702, 903, 906, 924, 1105
FokI GGATG 2 cut(s) 132, 590
FriOI GRGCYC 2 cut(s) 192, 236
Fsp4HI GCNGC 8 cut(s) 129, 240, 587, 702, 903, 906, 924, 1105
FspBI CTAG 3 cut(s) 6, 114, 713
GluI GCNGC 8 cut(s) 129, 240, 587, 702, 903, 906, 924, 1105
HaeIII GGCC 2 cut(s) 821, 1225
HapII CCGG 2 cut(s) 1005, 1214
HgaI GACGC 1 cut(s) 43
Hin1II CATG 9 cut(s) 89, 586, 602, 672, 826, 854, 871, 1103, 1234
HincII GTYRAC 2 cut(s) 350, 507
HindII GTYRAC 2 cut(s) 350, 507
HinfI GANTC 5 cut(s) 134, 490, 782, 1217, 1261
HpaII CCGG 2 cut(s) 1005, 1214
Hpy166II GTNNAC 5 cut(s) 14, 350, 420, 507, 970
Hpy188I TCNGA 5 cut(s) 250, 267, 495, 787, 859
Hpy188III TCNNGA 5 cut(s) 167, 277, 779, 929, 1160
Hpy8I GTNNAC 5 cut(s) 14, 350, 420, 507, 970
Hpy99I CGWCG 1 cut(s) 1118
HpyAV CCTTC 4 cut(s) 25, 301, 490, 785
HpyCH4III ACNGT 3 cut(s) 61, 82, 974
HpyCH4IV ACGT 1 cut(s) 1116
HpyF10VI GCNNNNNNNGC 4 cut(s) 595, 698, 869, 1110
HpyF3I CTNAG 6 cut(s) 191, 264, 856, 930, 1037, 1158
HpySE526I ACGT 1 cut(s) 1116
Hsp92II CATG 9 cut(s) 89, 586, 602, 672, 826, 854, 871, 1103, 1234
KpnI GGTACC 1 cut(s) 441
Ksp22I TGATCA 1 cut(s) 943
Kzo9I GATC 3 cut(s) 142, 258, 943
LmnI GCTCC 5 cut(s) 231, 303, 846, 931, 1255
Lsp1109I GCAGC 6 cut(s) 115, 226, 688, 889, 935, 1116
LweI GCATC 2 cut(s) 1123, 1209
MaeI CTAG 3 cut(s) 6, 114, 713
MaeII ACGT 1 cut(s) 1116
MaeIII GTNAC 5 cut(s) 35, 55, 109, 200, 277
MalI GATC 3 cut(s) 144, 260, 945
MboI GATC 3 cut(s) 142, 258, 943
MboII GAAGA 4 cut(s) 697, 713, 1055, 1068
MflI RGATCY 1 cut(s) 258
MhlI GDGCHC 2 cut(s) 192, 236
MluCI AATT 4 cut(s) 118, 602, 1058, 1191
MluI ACGCGT 1 cut(s) 52
MlyI GAGTC 2 cut(s) 499, 1226
MnlI CCTC 9 cut(s) 162, 244, 265, 273, 294, 456, 727, 874, 1231
MroXI GAANNNNTTC 1 cut(s) 831
MseI TTAA 3 cut(s) 315, 950, 1182
MslI CAYNNNNRTG 8 cut(s) 26, 90, 315, 636, 729, 872, 1143, 1273
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 2 cut(s) 1005, 1214
MspR9I CCNGG 2 cut(s) 435, 1222
Mva1269I GAATGC 1 cut(s) 412
MvaI CCWGG 2 cut(s) 435, 1222
MvnI CGCG 2 cut(s) 54, 1113
MwoI GCNNNNNNNGC 4 cut(s) 595, 698, 869, 1110
NcoI CCATGG 1 cut(s) 822
NdeII GATC 3 cut(s) 142, 258, 943
NlaIII CATG 9 cut(s) 89, 586, 602, 672, 826, 854, 871, 1103, 1234
NlaIV GGNNCC 6 cut(s) 439, 482, 674, 848, 1034, 1212
NmuCI GTSAC 3 cut(s) 55, 200, 277
NspI RCATGY 1 cut(s) 586
OliI CACNNNNGTG 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 990
PctI GAATGC 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 831
PfeI GAWTC 3 cut(s) 134, 782, 1261
PkrI GCNGC 8 cut(s) 130, 241, 588, 703, 904, 907, 925, 1106
PleI GAGTC 2 cut(s) 498, 1225
PpsI GAGTC 2 cut(s) 498, 1225
PpuMI RGGWCCY 2 cut(s) 480, 1032
PshAI GACNNNNGTC 2 cut(s) 272, 1167
PsiI TTATAA 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 236
Psp5II RGGWCCY 2 cut(s) 480, 1032
Psp6I CCWGG 2 cut(s) 433, 1220
PspEI GGTNACC 1 cut(s) 35
PspGI CCWGG 2 cut(s) 433, 1220
PspN4I GGNNCC 6 cut(s) 439, 482, 674, 848, 1034, 1212
PspPI GGNCC 2 cut(s) 480, 1032
PspPPI RGGWCCY 2 cut(s) 480, 1032
PstI CTGCAG 1 cut(s) 489
PstNI CAGNNNCTG 2 cut(s) 198, 929
PsuI RGATCY 1 cut(s) 258
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 2 cut(s) 439, 1154
RsaNI GTAC 2 cut(s) 438, 1153
RseI CAYNNNNRTG 8 cut(s) 26, 90, 315, 636, 729, 872, 1143, 1273
SacI GAGCTC 1 cut(s) 236
SalI GTCGAC 1 cut(s) 348
SaqAI TTAA 3 cut(s) 315, 950, 1182
SatI GCNGC 8 cut(s) 129, 240, 587, 702, 903, 906, 924, 1105
Sau3AI GATC 3 cut(s) 142, 258, 943
Sau96I GGNCC 2 cut(s) 480, 1032
ScaI AGTACT 1 cut(s) 1154
SchI GAGTC 2 cut(s) 499, 1226
ScrFI CCNGG 2 cut(s) 435, 1222
SduI GDGCHC 2 cut(s) 192, 236
SfaNI GCATC 2 cut(s) 1123, 1209
SfcI CTRYAG 2 cut(s) 60, 485
SinI GGWCC 2 cut(s) 480, 1032
SmiMI CAYNNNNRTG 8 cut(s) 26, 90, 315, 636, 729, 872, 1143, 1273
SmlI CTYRAG 2 cut(s) 369, 612
SmoI CTYRAG 2 cut(s) 369, 612
SpeI ACTAGT 1 cut(s) 5
Sse9I AATT 4 cut(s) 118, 602, 1058, 1191
SsiI CCGC 3 cut(s) 586, 863, 905
SspI AATATT 2 cut(s) 211, 1251
SspMI CTAG 3 cut(s) 6, 114, 713
SstI GAGCTC 1 cut(s) 236
StyD4I CCNGG 2 cut(s) 433, 1220
StyI CCWWGG 4 cut(s) 523, 694, 705, 822
TaaI ACNGT 3 cut(s) 61, 82, 974
TaiI ACGT 1 cut(s) 1119
TaqI TCGA 3 cut(s) 349, 993, 1020
TasI AATT 4 cut(s) 118, 602, 1058, 1191
TatI WGTACW 1 cut(s) 1152
TauI GCSGC 2 cut(s) 589, 908
TfiI GAWTC 3 cut(s) 134, 782, 1261
Tru1I TTAA 3 cut(s) 315, 950, 1182
Tru9I TTAA 3 cut(s) 315, 950, 1182
TscAI CASTG 5 cut(s) 64, 87, 130, 919, 1202
TseFI GTSAC 3 cut(s) 55, 200, 277
TseI GCWGC 6 cut(s) 128, 239, 701, 902, 923, 1104
Tsp45I GTSAC 3 cut(s) 55, 200, 277
TspDTI ATGAA 8 cut(s) 171, 615, 620, 654, 657, 698, 713, 1247
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 5 cut(s) 64, 87, 130, 919, 1202
VpaK11BI GGWCC 2 cut(s) 480, 1032
XapI RAATTY 1 cut(s) 602
XceI RCATGY 1 cut(s) 586
XmiI GTMKAC 2 cut(s) 349, 969
XmnI GAANNNNTTC 1 cut(s) 831
XspI CTAG 3 cut(s) 6, 114, 713
ZrmI AGTACT 1 cut(s) 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.