RchiOBHm_Chr1g0372261

Belongs to the peptidase S8 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
61009814 .. 61013080
3267 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59626

Sequence Viewer

Length: 225 bp
ATGGCTTCACTATCAGCCGTAAAGGTAGGTATATTTGTTGTCCAAGCAGCAGGAAATACCGGACCATCACCAAAAAGCATGTCTTCCTTCAGTCCATGGATCTTCACTGTTGATTCTGCTTCTCATGACAGAACCTACAGCAACTCTATAACCCTTGGCACAACGTCACCATTCCTGGAATTGGACTTACACCTGGTACACAGAAAGATACAATGTACACACTGA

Protein Analysis

74

Amino Acids

7.98

Weight (kDa)

8.0

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 73
AfaI GTAC 2 cut(s) 198, 217
AfiI CCNNNNNNNGG 1 cut(s) 181
AjnI CCWGG 2 cut(s) 174, 192
AlwI GGATC 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 47
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 60, 159
AvaII GGWCC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 59
BccI CCATC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 2 cut(s) 176, 194
BfmI CTRYAG 1 cut(s) 136
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 2 cut(s) 176, 194
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BmrFI CCNGG 2 cut(s) 176, 194
BpiI GAAGAC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 95, 154
BsaWI WCCGGW 1 cut(s) 59
Bsc4I CCNNNNNNNGG 1 cut(s) 181
BseBI CCWGG 2 cut(s) 176, 194
BseDI CCNNGG 2 cut(s) 95, 154
BseLI CCNNNNNNNGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 181
Bsp1407I TGTACA 1 cut(s) 215
Bsp143I GATC 1 cut(s) 99
Bsp19I CCATGG 1 cut(s) 95
BspHI TCATGA 1 cut(s) 124
BspPI GGATC 1 cut(s) 107
BsrGI TGTACA 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 95, 154
BssMI GATC 1 cut(s) 99
BssT1I CCWWGG 2 cut(s) 95, 154
Bst2UI CCWGG 2 cut(s) 176, 194
Bst4CI ACNGT 1 cut(s) 109
BstAUI TGTACA 1 cut(s) 215
BstDSI CCRYGG 1 cut(s) 95
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstNI CCWGG 2 cut(s) 176, 194
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 174, 192
BstSFI CTRYAG 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 59
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 95
BtsIMutI CAGTG 2 cut(s) 105, 220
CciI TCATGA 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 62
CsiI ACCWGGT 1 cut(s) 192
Csp6I GTAC 2 cut(s) 197, 216
CviAII CATG 3 cut(s) 79, 96, 125
CviJI RGCY 2 cut(s) 5, 17
CviKI_1 RGCY 2 cut(s) 5, 17
CviQI GTAC 2 cut(s) 197, 216
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Eco130I CCWWGG 2 cut(s) 95, 154
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 73
EcoRII CCWGG 2 cut(s) 174, 192
EcoT14I CCWWGG 2 cut(s) 95, 154
ErhI CCWWGG 2 cut(s) 95, 154
FaeI CATG 3 cut(s) 82, 99, 128
FaiI YATR 5 cut(s) 32, 80, 97, 126, 149
FalI AAGNNNNNCTT 2 cut(s) 67, 99
FatI CATG 3 cut(s) 78, 95, 124
Fnu4HI GCNGC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
HapII CCGG 1 cut(s) 60
Hin1II CATG 3 cut(s) 82, 99, 128
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 60
HphI GGTGA 2 cut(s) 60, 159
Hpy166II GTNNAC 2 cut(s) 199, 218
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 2 cut(s) 199, 218
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 3 cut(s) 82, 99, 128
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 6 cut(s) 36, 73, 161, 179, 188, 206
Lsp1109I GCAGC 1 cut(s) 59
MabI ACCWGGT 1 cut(s) 192
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 165
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 2 cut(s) 75, 94
MflI RGATCY 1 cut(s) 99
MluCI AATT 1 cut(s) 179
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 2 cut(s) 176, 194
MvaI CCWGG 2 cut(s) 176, 194
NcoI CCATGG 1 cut(s) 95
NdeII GATC 1 cut(s) 99
NlaIII CATG 3 cut(s) 82, 99, 128
NmuCI GTSAC 1 cut(s) 165
NspI RCATGY 1 cut(s) 82
PagI TCATGA 1 cut(s) 124
PfeI GAWTC 1 cut(s) 113
PfoI TCCNGGA 1 cut(s) 174
PkrI GCNGC 1 cut(s) 49
Psp6I CCWGG 2 cut(s) 174, 192
PspGI CCWGG 2 cut(s) 174, 192
PspPI GGNCC 1 cut(s) 62
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 2 cut(s) 198, 217
RsaNI GTAC 2 cut(s) 197, 216
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 1 cut(s) 62
ScrFI CCNGG 2 cut(s) 176, 194
SetI ASST 5 cut(s) 27, 31, 137, 167, 195
SexAI ACCWGGT 1 cut(s) 192
SfcI CTRYAG 1 cut(s) 136
SinI GGWCC 1 cut(s) 62
Sse9I AATT 1 cut(s) 179
StyD4I CCNGG 2 cut(s) 174, 192
StyI CCWWGG 2 cut(s) 95, 154
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 167
TasI AATT 1 cut(s) 179
TatI WGTACW 1 cut(s) 215
TfiI GAWTC 1 cut(s) 113
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 165
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 165
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 62
XceI RCATGY 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.