Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0012681

Physical Location & Seq

Genomic Coordinates Reverse (-)

73860140 .. 73886157

Gene Structure 26018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG465000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTCGAATCCTCATTTCCTTTTCCTCTGTTCCTCAGTGCCTAAACTCTCTCGGCCCCGAGTCTCTCAATCGAATCCTCGCCGCCACCGGACGCCGCTAATCAATTCCGGCGACACACAGACCGGAACGCAGGAAGACTGGAACTCAGTTAACTCACAGCAGCTTTCCATCTCTCTTTCCATCGGTAAGGTTTCGATATTGATAATTTATGCACTGAGATTCTGCATTGAAGAAGACTCGGCTTCAGAGATTGAAGAATGCCAGGTTAGATTAGCTTGGAATTATAGTAACAGATTTGGGCTAGACTTTGGTCAGTTGGTGTTTATAGCTATGATCTTTCTGGATAAGGAAACTTGTGGTGATTGCAAGGGTGAGAGAGAAAGGGAGCTCAAAAAGCAGCTAGAAAATTTTAATAGCAAAATAAGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

16.35

Weight (kDa)

6.72

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012681)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372261 RchiOBHm_Chr5g0035381 RchiOBHm_Chr7g0241421
rosa_laevigata	RLG00000012855
rosa_multiflora	Rmu_sc0002132.1_g000041 Rmu_sc0003441.1_g000020
rosa_roxburghii	Rroxscaffold_1G00057440 Rroxscaffold_4G00307430
rosa_samantha	Rh1CG138700 Rh2BG197100 Rh2DG602800 Rh3CG352500 Rh5AG054800 Rh5BG243600 Rh5CG249900 Rh5DG465000 Rh6AG046400 Rh6CG145400 Rh6CG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	82, 95
AcsI	RAATTY	1 cut(s)	406
AcuI	CTGAAG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	92
AgsI	TTSAA	2 cut(s)	230, 254
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	5 cut(s)	163, 275, 329, 388, 400
AluI	AGCT	5 cut(s)	163, 275, 329, 388, 400
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	2 cut(s)	160, 397
ApoI	RAATTY	1 cut(s)	406
AspS9I	GGNCC	1 cut(s)	54
AsuHPI	GGTGA	2 cut(s)	371, 383
AvaI	CYCGRG	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	390
BbsI	GAAGAC	2 cut(s)	141, 240
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	172, 409
BccI	CCATC	2 cut(s)	176, 188
BciT130I	CCWGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	2 cut(s)	302, 401
BisI	GCNGC	4 cut(s)	82, 95, 161, 398
BlsI	GCNGC	4 cut(s)	83, 96, 162, 399
Bme1390I	CCNGG	1 cut(s)	263
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	263
BoxI	GACNNNNGTC	1 cut(s)	309
BpiI	GAAGAC	2 cut(s)	141, 240
BsaHI	GRCGYC	1 cut(s)	92
BsaWI	WCCGGW	2 cut(s)	87, 122
Bse1I	ACTGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	263
BseMII	CTCAG	3 cut(s)	48, 159, 206
BseNI	ACTGG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	172, 409
BshFI	GGCC	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	390
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	3 cut(s)	88, 108, 123
BsmAI	GTCTC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	55
BsoBI	CYCGRG	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	333
BspACI	CCGC	2 cut(s)	82, 95
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	3 cut(s)	47, 158, 207
BspLI	GGNNCC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	143
BssMI	GATC	1 cut(s)	333
BssNI	GRCGYC	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	92
BstDEI	CTNAG	3 cut(s)	34, 145, 215
BstKTI	GATC	1 cut(s)	336
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	333
BstMWI	GCNNNNNNNGC	2 cut(s)	394, 423
BstNI	CCWGG	1 cut(s)	263
BstPAI	GACNNNNGTC	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	172, 409
BstV2I	GAAGAC	2 cut(s)	141, 240
BsuRI	GGCC	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	42, 212
Cfr13I	GGNCC	1 cut(s)	54
CseI	GACGC	1 cut(s)	100
CviJI	RGCY	8 cut(s)	55, 163, 242, 275, 301, 329, 388, 400
CviKI_1	RGCY	8 cut(s)	55, 163, 242, 275, 301, 329, 388, 400
DdeI	CTNAG	3 cut(s)	34, 145, 215
DpnI	GATC	1 cut(s)	335
DpnII	GATC	1 cut(s)	333
Ecl136II	GAGCTC	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	390
Eco53kI	GAGCTC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	390
FaiI	YATR	6 cut(s)	210, 285, 326, 332, 428, 430
Fnu4HI	GCNGC	4 cut(s)	82, 95, 161, 398
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	4 cut(s)	82, 95, 161, 398
FspBI	CTAG	2 cut(s)	302, 401
GluI	GCNGC	4 cut(s)	82, 95, 161, 398
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	3 cut(s)	88, 108, 123
HgaI	GACGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	5 cut(s)	7, 60, 73, 219, 236
HpaI	GTTAAC	1 cut(s)	151
HpaII	CCGG	3 cut(s)	88, 108, 123
HphI	GGTGA	2 cut(s)	371, 383
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	1 cut(s)	151
HpyCH4V	TGCA	3 cut(s)	212, 225, 366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	394, 423
HpyF3I	CTNAG	3 cut(s)	34, 145, 215
Hsp92I	GRCGYC	1 cut(s)	92
KspAI	GTTAAC	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	333
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	8 cut(s)	101, 116, 121, 124, 136, 248, 275, 326
Lsp1109I	GCAGC	2 cut(s)	172, 409
MaeI	CTAG	2 cut(s)	302, 401
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	1 cut(s)	335
MboI	GATC	1 cut(s)	333
MboII	GAAGA	4 cut(s)	146, 242, 245, 266
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	4 cut(s)	103, 204, 280, 406
MlyI	GAGTC	2 cut(s)	69, 230
MnlI	CCTC	4 cut(s)	21, 35, 43, 87
MseI	TTAA	2 cut(s)	150, 411
MspI	CCGG	3 cut(s)	88, 108, 123
MspR9I	CCNGG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	2 cut(s)	394, 423
NdeII	GATC	1 cut(s)	333
NlaIV	GGNNCC	1 cut(s)	56
NmeAIII	GCCGAG	2 cut(s)	31, 218
PctI	GAATGC	1 cut(s)	263
PfeI	GAWTC	3 cut(s)	7, 73, 219
PkrI	GCNGC	4 cut(s)	83, 96, 162, 399
PleI	GAGTC	2 cut(s)	68, 230
PpsI	GAGTC	2 cut(s)	68, 230
PshAI	GACNNNNGTC	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	150, 411
SatI	GCNGC	4 cut(s)	82, 95, 161, 398
Sau3AI	GATC	1 cut(s)	333
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	2 cut(s)	69, 230
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	7 cut(s)	165, 192, 267, 277, 331, 390, 402
Sse9I	AATT	4 cut(s)	103, 204, 280, 406
SsiI	CCGC	2 cut(s)	82, 95
SspMI	CTAG	2 cut(s)	302, 401
SstI	GAGCTC	1 cut(s)	390
StyD4I	CCNGG	1 cut(s)	261
TaqI	TCGA	3 cut(s)	5, 71, 194
TasI	AATT	4 cut(s)	103, 204, 280, 406
TauI	GCSGC	2 cut(s)	84, 97
TfiI	GAWTC	3 cut(s)	7, 73, 219
Tru1I	TTAA	2 cut(s)	150, 411
Tru9I	TTAA	2 cut(s)	150, 411
TscAI	CASTG	2 cut(s)	42, 219
TseI	GCWGC	2 cut(s)	160, 397
TspRI	CASTG	2 cut(s)	42, 219
XapI	RAATTY	1 cut(s)	406
XspI	CTAG	2 cut(s)	302, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.