Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012681

Physical Location & Seq

Genomic Coordinates Forward (+)

23206953 .. 23208707

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012855

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTACAACAAGGCTGAGGCTAGTTTTGGACTGTTGGGGTTTGCTTTGCTTGGAATTGAGAGGGATGGGGTTGACATAATAAGCTTATCAATCACTCCCAATAGATGTCCTCCCGGAGTTGCAACATTTTTCAACCCCATAGATATGGCTTCACTATCAGCCGTAAAGGTAGGTATATTTGTTGTCCAAGCAGCAGGAAATACCGGACCATCACCAAAAAGCATGTCTTCCTTCAGTCCATGGATCTTCACTGTTGATTCTGCTTCTCATGACAGAACCTACAGCAACTCTATAACCCTTGGCACAACGTCACCATTCCTGGAATTGGACTTGCACCTTGTATTATATGCTGGTGAAAGCTACAATACCAGTGCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

127

Amino Acids

13.34

Weight (kDa)

4.82

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012681)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372261 RchiOBHm_Chr5g0035381 RchiOBHm_Chr7g0241421
rosa_laevigata	RLG00000012855
rosa_multiflora	Rmu_sc0002132.1_g000041 Rmu_sc0003441.1_g000020
rosa_roxburghii	Rroxscaffold_1G00057440 Rroxscaffold_4G00307430
rosa_samantha	Rh1CG138700 Rh2BG197100 Rh2DG602800 Rh3CG352500 Rh5AG054800 Rh5BG243600 Rh5CG249900 Rh5DG465000 Rh6AG046400 Rh6CG145400 Rh6CG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	251
AcuI	CTGAAG	1 cut(s)	217
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	2 cut(s)	84, 360
AluI	AGCT	2 cut(s)	84, 360
AlwI	GGATC	1 cut(s)	251
ApeKI	GCWGC	1 cut(s)	191
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	3 cut(s)	204, 303, 365
AvaII	GGWCC	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	2 cut(s)	59, 217
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	320
BcnI	CCSGG	1 cut(s)	114
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	280
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	2 cut(s)	114, 320
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmrFI	CCNGG	2 cut(s)	114, 320
BpiI	GAAGAC	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	15
BpuMI	CCSGG	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	239, 298
BsaWI	WCCGGW	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse1I	ACTGG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	2 cut(s)	239, 298
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	114, 204
BslI	CCNNNNNNNGG	1 cut(s)	325
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	243
Bsp19I	CCATGG	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	268
BspPI	GGATC	1 cut(s)	251
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	369
BssECI	CCNNGG	2 cut(s)	239, 298
BssMI	GATC	1 cut(s)	243
BssT1I	CCWWGG	2 cut(s)	239, 298
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	2 cut(s)	33, 253
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	1 cut(s)	246
BstMBI	GATC	1 cut(s)	243
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	112, 318
BstSFI	CTRYAG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	203
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	243
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	2 cut(s)	249, 376
CciI	TCATGA	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	223, 240, 269
CviJI	RGCY	6 cut(s)	14, 20, 84, 149, 161, 360
CviKI_1	RGCY	6 cut(s)	14, 20, 84, 149, 161, 360
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
Eco130I	CCWWGG	2 cut(s)	239, 298
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	2 cut(s)	239, 298
ErhI	CCWWGG	2 cut(s)	239, 298
FaeI	CATG	3 cut(s)	226, 243, 272
FalI	AAGNNNNNCTT	2 cut(s)	211, 243
FatI	CATG	3 cut(s)	222, 239, 268
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	1 cut(s)	192
HapII	CCGG	2 cut(s)	114, 204
Hin1II	CATG	3 cut(s)	226, 243, 272
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	82
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	2 cut(s)	114, 204
HphI	GGTGA	3 cut(s)	204, 303, 365
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	2 cut(s)	33, 253
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	3 cut(s)	122, 334, 374
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	3 cut(s)	226, 243, 272
Kzo9I	GATC	1 cut(s)	243
LpnPI	CCDG	6 cut(s)	127, 180, 217, 305, 332, 336
Lsp1109I	GCAGC	1 cut(s)	203
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	309
MalI	GATC	1 cut(s)	245
MboI	GATC	1 cut(s)	243
MboII	GAAGA	2 cut(s)	219, 238
MflI	RGATCY	1 cut(s)	243
MluCI	AATT	2 cut(s)	54, 323
MnlI	CCTC	3 cut(s)	10, 54, 120
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	2 cut(s)	114, 204
MspR9I	CCNGG	2 cut(s)	114, 320
MvaI	CCWGG	1 cut(s)	320
NciI	CCSGG	1 cut(s)	114
NcoI	CCATGG	1 cut(s)	239
NdeII	GATC	1 cut(s)	243
NlaIII	CATG	3 cut(s)	226, 243, 272
NmuCI	GTSAC	1 cut(s)	309
NspI	RCATGY	1 cut(s)	226
PagI	TCATGA	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	257
PfoI	TCCNGGA	2 cut(s)	112, 318
PkrI	GCNGC	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	243
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	143
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	243
Sau96I	GGNCC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	114, 320
SetI	ASST	7 cut(s)	86, 171, 175, 281, 311, 339, 362
SfcI	CTRYAG	1 cut(s)	280
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	54, 323
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	112, 318
StyI	CCWWGG	2 cut(s)	239, 298
TaaI	ACNGT	2 cut(s)	33, 253
TaiI	ACGT	1 cut(s)	311
TasI	AATT	2 cut(s)	54, 323
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	257
TscAI	CASTG	2 cut(s)	256, 376
TseFI	GTSAC	1 cut(s)	309
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	309
TspRI	CASTG	2 cut(s)	256, 376
VpaK11BI	GGWCC	1 cut(s)	206
XceI	RCATGY	1 cut(s)	226
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.