Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012681

Physical Location & Seq

Genomic Coordinates Forward (+)

29261829 .. 29265150

Gene Structure 3322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31427

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCTTCACTATCAGCCGTAAAGGTAGGTATATTTGTTGTCCAAGCAGCAGGAAATACCGGACCATCACCAAAAAGCATGTCTTCCTTCAGTCCATGGATCTTCACTGTTGATTCTGCTTCTCATGACAGAACCTACAGCAACTCTATAACCCTTGGCACAACGTCACCATTCCTGGAATTGGACTTACACCTGGTACACAGAAAGATACAATTTGCAGATGATATGTATGTAAGTGAATGCCAAGACTCGAGCAACTTCAATCAAGATCTGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

92

Amino Acids

10.05

Weight (kDa)

4.96

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012681)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372261 RchiOBHm_Chr5g0035381 RchiOBHm_Chr7g0241421
rosa_laevigata	RLG00000012855
rosa_multiflora	Rmu_sc0002132.1_g000041 Rmu_sc0003441.1_g000020
rosa_roxburghii	Rroxscaffold_1G00057440 Rroxscaffold_4G00307430
rosa_samantha	Rh1CG138700 Rh2BG197100 Rh2DG602800 Rh3CG352500 Rh5AG054800 Rh5BG243600 Rh5CG249900 Rh5DG465000 Rh6AG046400 Rh6CG145400 Rh6CG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	107
AcuI	CTGAAG	1 cut(s)	73
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	262
AjnI	CCWGG	2 cut(s)	174, 192
AlwI	GGATC	1 cut(s)	107
Ama87I	CYCGRG	1 cut(s)	250
ApeKI	GCWGC	1 cut(s)	47
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	60, 159
AvaI	CYCGRG	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	1 cut(s)	73
BceAI	ACGGC	1 cut(s)	2
BciT130I	CCWGG	2 cut(s)	176, 194
BfaI	CTAG	1 cut(s)	277
BfmI	CTRYAG	1 cut(s)	136
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	2 cut(s)	176, 194
Bme18I	GGWCC	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	62
BmrFI	CCNGG	2 cut(s)	176, 194
BpiI	GAAGAC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	95, 154
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
BseBI	CCWGG	2 cut(s)	176, 194
BseDI	CCNNGG	2 cut(s)	95, 154
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmI	GAATGC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	99, 268
Bsp19I	CCATGG	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	124
BspPI	GGATC	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	95, 154
BssMI	GATC	2 cut(s)	99, 268
BssT1I	CCWWGG	2 cut(s)	95, 154
Bst2UI	CCWGG	2 cut(s)	176, 194
Bst4CI	ACNGT	1 cut(s)	109
BstDSI	CCRYGG	1 cut(s)	95
BstKTI	GATC	2 cut(s)	102, 271
BstMBI	GATC	2 cut(s)	99, 268
BstNI	CCWGG	2 cut(s)	176, 194
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	2 cut(s)	174, 192
BstSFI	CTRYAG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	59
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	2 cut(s)	99, 268
BstYI	RGATCY	2 cut(s)	99, 268
BtgI	CCRYGG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	105
CciI	TCATGA	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	62
CsiI	ACCWGGT	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	3 cut(s)	79, 96, 125
CviJI	RGCY	2 cut(s)	5, 17
CviKI_1	RGCY	2 cut(s)	5, 17
CviQI	GTAC	1 cut(s)	197
DpnI	GATC	2 cut(s)	101, 270
DpnII	GATC	2 cut(s)	99, 268
Eco130I	CCWWGG	2 cut(s)	95, 154
Eco47I	GGWCC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	174, 192
EcoT14I	CCWWGG	2 cut(s)	95, 154
ErhI	CCWWGG	2 cut(s)	95, 154
FaeI	CATG	3 cut(s)	82, 99, 128
FaiI	YATR	7 cut(s)	32, 80, 97, 126, 149, 227, 231
FalI	AAGNNNNNCTT	2 cut(s)	67, 99
FatI	CATG	3 cut(s)	78, 95, 124
Fnu4HI	GCNGC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	277
GluI	GCNGC	1 cut(s)	48
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	3 cut(s)	82, 99, 128
HinfI	GANTC	2 cut(s)	113, 248
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	2 cut(s)	60, 159
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188III	TCNNGA	2 cut(s)	125, 266
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	3 cut(s)	82, 99, 128
Kzo9I	GATC	2 cut(s)	99, 268
LpnPI	CCDG	7 cut(s)	36, 73, 161, 179, 188, 206, 257
Lsp1109I	GCAGC	1 cut(s)	59
MabI	ACCWGGT	1 cut(s)	192
MaeI	CTAG	1 cut(s)	277
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	2 cut(s)	101, 270
MboI	GATC	2 cut(s)	99, 268
MboII	GAAGA	2 cut(s)	75, 94
MflI	RGATCY	2 cut(s)	99, 268
MluCI	AATT	2 cut(s)	179, 212
MlyI	GAGTC	1 cut(s)	242
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	2 cut(s)	176, 194
Mva1269I	GAATGC	1 cut(s)	245
MvaI	CCWGG	2 cut(s)	176, 194
NcoI	CCATGG	1 cut(s)	95
NdeII	GATC	2 cut(s)	99, 268
NlaIII	CATG	3 cut(s)	82, 99, 128
NmuCI	GTSAC	1 cut(s)	165
NspI	RCATGY	1 cut(s)	82
PaeR7I	CTCGAG	1 cut(s)	250
PagI	TCATGA	1 cut(s)	124
PctI	GAATGC	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	174
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
Psp6I	CCWGG	2 cut(s)	174, 192
PspGI	CCWGG	2 cut(s)	174, 192
PspPI	GGNCC	1 cut(s)	62
PspXI	VCTCGAGB	1 cut(s)	250
PsuI	RGATCY	2 cut(s)	99, 268
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	2 cut(s)	99, 268
Sau96I	GGNCC	1 cut(s)	62
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	2 cut(s)	176, 194
SetI	ASST	5 cut(s)	27, 31, 137, 167, 195
SexAI	ACCWGGT	1 cut(s)	192
SfcI	CTRYAG	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	250
SinI	GGWCC	1 cut(s)	62
SlaI	CTCGAG	1 cut(s)	250
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	2 cut(s)	179, 212
SspMI	CTAG	1 cut(s)	277
StyD4I	CCNGG	2 cut(s)	174, 192
StyI	CCWWGG	2 cut(s)	95, 154
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	1 cut(s)	251
TasI	AATT	2 cut(s)	179, 212
TfiI	GAWTC	1 cut(s)	113
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	165
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	165
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	62
XceI	RCATGY	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	250
XspI	CTAG	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.