Rh6CG239800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012681
Physical Location & Seq
Reverse (-)
40531389 .. 40531742
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG239800.1

Sequence Viewer

Length: 354 bp
ATGGAGAACCCGGCCGTAACAGCGGCGACTGGGGCTTCGCCTTCTTCATCGACGATGGAGGACGCTCCGTGCAACCCACAGACCGCCACCTTCACTCTCTCGCCGTCTCTTCCTCTCCTCAAGTCTCACCGCCTCTACACAACAAAGTCGTCATGGTCTCCGGCTCTTCGACGAGGCCCTCCAACGCCGCCATCGCCTCTTCCTCCACCTCACTTGCATCAGAACCCTAAACTAGCACTGATTCTTCAGCGACGACGACAAGGCCAGCGGCCTCTTCATCTCCAATCGAAAATCCCTAACCGAAAAGTCTCTCTGGCTCTTCGTCATGGCCTACAGATCGGACGATATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.84

Weight (kDa)

11.46

Isoelectric Point (pI)

82.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 23, 84, 130, 188, 268
AcoI YGGCCR 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 230
Alw26I GTCTC 4 cut(s) 111, 129, 162, 313
AoxI GGCC 5 cut(s) 12, 175, 262, 269, 328
ArsI GACNNNNNNTTYG 2 cut(s) 19, 51
AspS9I GGNCC 1 cut(s) 176
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 119
BccI CCATC 2 cut(s) 49, 199
BceAI ACGGC 1 cut(s) 88
BcnI CCSGG 1 cut(s) 11
BcoDI GTCTC 4 cut(s) 111, 129, 162, 313
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 332
BisI GCNGC 3 cut(s) 24, 188, 269
BlsI GCNGC 3 cut(s) 25, 189, 270
Bme1390I CCNGG 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 226
BmuI ACTGGG 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 107
BseX3I CGGCCG 1 cut(s) 12
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 5 cut(s) 14, 177, 264, 271, 330
BsiEI CGRYCG 1 cut(s) 15
BsiSI CCGG 2 cut(s) 11, 161
BsmAI GTCTC 4 cut(s) 111, 129, 162, 313
BsmBI CGTCTC 1 cut(s) 111
BsnI GGCC 5 cut(s) 14, 177, 264, 271, 330
Bso31I GGTCTC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 336
BspACI CCGC 5 cut(s) 23, 84, 130, 188, 268
BspANI GGCC 5 cut(s) 14, 177, 264, 271, 330
BspQI GCTCTTC 2 cut(s) 171, 324
BspTNI GGTCTC 1 cut(s) 162
BsrI ACTGG 1 cut(s) 34
BssMI GATC 1 cut(s) 336
Bst6I CTCTTC 5 cut(s) 114, 171, 204, 279, 324
BstC8I GCNNGC 1 cut(s) 266
BstKTI GATC 1 cut(s) 339
BstMAI GTCTC 4 cut(s) 111, 129, 162, 313
BstMBI GATC 1 cut(s) 336
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 3 cut(s) 20, 32, 193
BstSCI CCNGG 1 cut(s) 9
BstSFI CTRYAG 1 cut(s) 332
BstZI CGGCCG 1 cut(s) 12
BsuRI GGCC 5 cut(s) 14, 177, 264, 271, 330
BtgZI GCGATG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 176
CseI GACGC 1 cut(s) 71
CspCI CAANNNNNGTGG 2 cut(s) 195, 230
CviAII CATG 2 cut(s) 153, 326
CviJI RGCY 8 cut(s) 14, 35, 164, 177, 264, 271, 317, 330
CviKI_1 RGCY 8 cut(s) 14, 35, 164, 177, 264, 271, 317, 330
DpnI GATC 1 cut(s) 338
DpnII GATC 1 cut(s) 336
EaeI YGGCCR 1 cut(s) 12
EagI CGGCCG 1 cut(s) 12
Eam1104I CTCTTC 5 cut(s) 114, 171, 204, 279, 324
EarI CTCTTC 5 cut(s) 114, 171, 204, 279, 324
EclXI CGGCCG 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 162
Eco52I CGGCCG 1 cut(s) 12
Eco57I CTGAAG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 176
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 2 cut(s) 156, 329
FaiI YATR 3 cut(s) 154, 327, 348
FatI CATG 2 cut(s) 152, 325
Fnu4HI GCNGC 3 cut(s) 24, 188, 269
Fsp4HI GCNGC 3 cut(s) 24, 188, 269
FspBI CTAG 1 cut(s) 233
GluI GCNGC 3 cut(s) 24, 188, 269
HaeIII GGCC 5 cut(s) 14, 177, 264, 271, 330
HapII CCGG 2 cut(s) 11, 161
HgaI GACGC 1 cut(s) 71
Hin1II CATG 2 cut(s) 156, 329
HinfI GANTC 1 cut(s) 241
HpaII CCGG 2 cut(s) 11, 161
HphI GGTGA 1 cut(s) 119
Hpy188I TCNGA 2 cut(s) 222, 341
Hpy99I CGWCG 4 cut(s) 55, 174, 255, 258
HpyAV CCTTC 2 cut(s) 51, 100
HpyCH4V TGCA 2 cut(s) 72, 217
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 32, 193
Hsp92II CATG 2 cut(s) 156, 329
Kzo9I GATC 1 cut(s) 336
LguI GCTCTTC 2 cut(s) 171, 324
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 5 cut(s) 15, 24, 174, 278, 299
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 338
MboI GATC 1 cut(s) 336
MboII GAAGA 7 cut(s) 36, 101, 158, 191, 236, 266, 311
MmeI TCCRAC 1 cut(s) 206
MspA1I CMGCKG 2 cut(s) 23, 268
MspI CCGG 2 cut(s) 11, 161
MspR9I CCNGG 1 cut(s) 11
MwoI GCNNNNNNNGC 3 cut(s) 20, 32, 193
NciI CCSGG 1 cut(s) 11
NdeII GATC 1 cut(s) 336
NlaIII CATG 2 cut(s) 156, 329
PciSI GCTCTTC 2 cut(s) 171, 324
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 3 cut(s) 25, 189, 270
PspPI GGNCC 1 cut(s) 176
SapI GCTCTTC 2 cut(s) 171, 324
SatI GCNGC 3 cut(s) 24, 188, 269
Sau3AI GATC 1 cut(s) 336
Sau96I GGNCC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 11
SetI ASST 2 cut(s) 92, 211
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SsiI CCGC 5 cut(s) 23, 84, 130, 188, 268
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 9
TaqI TCGA 3 cut(s) 50, 169, 287
TauI GCSGC 3 cut(s) 26, 190, 271
TfiI GAWTC 1 cut(s) 241
TscAI CASTG 1 cut(s) 243
TspDTI ATGAA 2 cut(s) 36, 266
TspGWI ACGGA 1 cut(s) 57
TspRI CASTG 1 cut(s) 243
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.