RchiOBHm_Chr7g0241421

Belongs to the peptidase S8 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
67494028 .. 67495852
1825 bp
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UTR
Exon/CDS
Intron
PRQ21633

Sequence Viewer

Length: 264 bp
ATGGCTTCACTATCAGCCGTAAAGGTAGGTATATTTGTTGTCCAAGCAGCAGGAAATACCGGACCTTCACCAAAAAGCATGTCTTCCTTCAGTCCATGGATCTTCACTGTTGATTCTGCTTCTCATGACAGAACCTACAGCAACTCTATAACCCTTGGCACAACGTCACCATTCCTGGAATTGGACTTACACGTAAGTTTGTTCCCTGCTGCTTCTGGCTCAAATTCTTTCTTTTTTTTCCTTTTTTTTTTTTTTGGCTTATAG

Protein Analysis

87

Amino Acids

9.34

Weight (kDa)

5.97

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 107
AcsI RAATTY 1 cut(s) 223
AcuI CTGAAG 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 190
AjnI CCWGG 1 cut(s) 174
AlwI GGATC 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 47, 209
ApoI RAATTY 1 cut(s) 223
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 60, 159
AvaII GGWCC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 75
BbvI GCAGC 2 cut(s) 59, 196
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 136
BisI GCNGC 2 cut(s) 48, 210
BlsI GCNGC 2 cut(s) 49, 211
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 75
BsaAI YACGTR 1 cut(s) 193
BsaJI CCNNGG 2 cut(s) 95, 154
BsaWI WCCGGW 1 cut(s) 59
Bsc4I CCNNNNNNNGG 1 cut(s) 181
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 95, 154
BseLI CCNNNNNNNGG 1 cut(s) 181
BseXI GCAGC 2 cut(s) 59, 196
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 181
Bsp143I GATC 1 cut(s) 99
Bsp19I CCATGG 1 cut(s) 95
BspHI TCATGA 1 cut(s) 124
BspPI GGATC 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 95, 154
BssMI GATC 1 cut(s) 99
BssT1I CCWWGG 2 cut(s) 95, 154
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 109
BstBAI YACGTR 1 cut(s) 193
BstDSI CCRYGG 1 cut(s) 95
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 136
BstV1I GCAGC 2 cut(s) 59, 196
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 105
CciI TCATGA 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 62
CviAII CATG 3 cut(s) 79, 96, 125
CviJI RGCY 4 cut(s) 5, 17, 219, 258
CviKI_1 RGCY 4 cut(s) 5, 17, 219, 258
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Eco130I CCWWGG 2 cut(s) 95, 154
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 2 cut(s) 95, 154
ErhI CCWWGG 2 cut(s) 95, 154
FaeI CATG 3 cut(s) 82, 99, 128
FaiI YATR 6 cut(s) 32, 80, 97, 126, 149, 262
FalI AAGNNNNNCTT 2 cut(s) 67, 99
FatI CATG 3 cut(s) 78, 95, 124
Fnu4HI GCNGC 2 cut(s) 48, 210
Fsp4HI GCNGC 2 cut(s) 48, 210
GluI GCNGC 2 cut(s) 48, 210
HapII CCGG 1 cut(s) 60
Hin1II CATG 3 cut(s) 82, 99, 128
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 60
HphI GGTGA 2 cut(s) 60, 159
Hpy188III TCNNGA 1 cut(s) 125
HpyAV CCTTC 2 cut(s) 75, 97
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 2 cut(s) 164, 192
HpySE526I ACGT 2 cut(s) 164, 192
Hsp92II CATG 3 cut(s) 82, 99, 128
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 6 cut(s) 36, 73, 161, 188, 201, 219
Lsp1109I GCAGC 2 cut(s) 59, 196
MaeII ACGT 2 cut(s) 164, 192
MaeIII GTNAC 1 cut(s) 165
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 2 cut(s) 75, 94
MflI RGATCY 1 cut(s) 99
MluCI AATT 2 cut(s) 179, 223
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
NcoI CCATGG 1 cut(s) 95
NdeII GATC 1 cut(s) 99
NlaIII CATG 3 cut(s) 82, 99, 128
NmuCI GTSAC 1 cut(s) 165
NspI RCATGY 1 cut(s) 82
PagI TCATGA 1 cut(s) 124
PfeI GAWTC 1 cut(s) 113
PfoI TCCNGGA 1 cut(s) 174
PkrI GCNGC 2 cut(s) 49, 211
Ppu21I YACGTR 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspPI GGNCC 1 cut(s) 62
PsuI RGATCY 1 cut(s) 99
SatI GCNGC 2 cut(s) 48, 210
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 176
SetI ASST 6 cut(s) 27, 31, 67, 137, 167, 195
SfcI CTRYAG 1 cut(s) 136
SinI GGWCC 1 cut(s) 62
Sse9I AATT 2 cut(s) 179, 223
StyD4I CCNGG 1 cut(s) 174
StyI CCWWGG 2 cut(s) 95, 154
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 2 cut(s) 167, 195
TasI AATT 2 cut(s) 179, 223
TfiI GAWTC 1 cut(s) 113
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 165
TseI GCWGC 2 cut(s) 47, 209
Tsp45I GTSAC 1 cut(s) 165
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 1 cut(s) 223
XceI RCATGY 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.