Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012681

Physical Location & Seq

Genomic Coordinates Forward (+)

83442355 .. 83470126

Gene Structure 27772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG602800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTTCACTATCAGCCGTAAGGGTTGGTATATTTGTTGTCCAAGCAGCAGGAAATACTGGACCATCACCAAAAAGCATGTCTTCCTTCAGTCCATGGATCTTCACTGTTGATTCTGCTTCTCATGACAGAACCTACAGCAACTCTATAACCCTTGGCACAACGTCACCATTCCTGGAATTGGACTTGCACTCGAATCCTCGCCGCCACCGGACGCCGCCAATCAATTCCGGCGACACAAAGACGGGAACTCAGGAAGACAGGAACTCACAGCAGCTTTCCATCTCTCTTTCCATCGGTAAGGATAGCACCAAATCTACAGACATTACAAAGACTAAAACTTTGGATCAAGCTCACCAATTTAACAAAAGATTGTGTCGAGACTGCTCTCTAAAAATGGCTGGCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

136

Amino Acids

14.79

Weight (kDa)

9.56

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012681)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372261 RchiOBHm_Chr5g0035381 RchiOBHm_Chr7g0241421
rosa_laevigata	RLG00000012855
rosa_multiflora	Rmu_sc0002132.1_g000041 Rmu_sc0003441.1_g000020
rosa_roxburghii	Rroxscaffold_1G00057440 Rroxscaffold_4G00307430
rosa_samantha	Rh1CG138700 Rh2BG197100 Rh2DG602800 Rh3CG352500 Rh5AG054800 Rh5BG243600 Rh5CG249900 Rh5DG465000 Rh6AG046400 Rh6CG145400 Rh6CG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	205, 218
AclWI	GGATC	2 cut(s)	107, 354
AcuI	CTGAAG	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	2 cut(s)	277, 353
AluI	AGCT	2 cut(s)	277, 353
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	2 cut(s)	107, 354
ApeKI	GCWGC	2 cut(s)	47, 274
ArsI	GACNNNNNNTTYG	4 cut(s)	65, 97, 325, 357
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	3 cut(s)	60, 159, 347
AvaII	GGWCC	1 cut(s)	62
BbsI	GAAGAC	2 cut(s)	75, 264
BbvI	GCAGC	2 cut(s)	59, 286
BccI	CCATC	3 cut(s)	73, 290, 302
BceAI	ACGGC	1 cut(s)	2
BciT130I	CCWGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	375
BfmI	CTRYAG	2 cut(s)	136, 318
BisI	GCNGC	4 cut(s)	48, 205, 218, 275
BlsI	GCNGC	4 cut(s)	49, 206, 219, 276
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	176
BpiI	GAAGAC	2 cut(s)	75, 264
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	95, 154
BsaWI	WCCGGW	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	95, 154
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	59, 286
BsiSI	CCGG	2 cut(s)	211, 231
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	375
Bsp143I	GATC	2 cut(s)	99, 346
Bsp19I	CCATGG	1 cut(s)	95
BspACI	CCGC	2 cut(s)	205, 218
BspCNI	CTCAG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	124
BspPI	GGATC	2 cut(s)	107, 354
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	95, 154
BssMI	GATC	2 cut(s)	99, 346
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	2 cut(s)	95, 154
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	109
BstACI	GRCGYC	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	1 cut(s)	95
BstKTI	GATC	2 cut(s)	102, 349
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	2 cut(s)	99, 346
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	174
BstSFI	CTRYAG	2 cut(s)	136, 318
BstV1I	GCAGC	2 cut(s)	59, 286
BstV2I	GAAGAC	2 cut(s)	75, 264
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	403
CciI	TCATGA	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	62
CseI	GACGC	1 cut(s)	223
CviAII	CATG	3 cut(s)	79, 96, 125
CviJI	RGCY	6 cut(s)	5, 17, 277, 353, 401, 405
CviKI_1	RGCY	6 cut(s)	5, 17, 277, 353, 401, 405
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	101, 348
DpnII	GATC	2 cut(s)	99, 346
Eco130I	CCWWGG	2 cut(s)	95, 154
Eco47I	GGWCC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	2 cut(s)	95, 154
ErhI	CCWWGG	2 cut(s)	95, 154
FaeI	CATG	3 cut(s)	82, 99, 128
FaiI	YATR	6 cut(s)	32, 80, 97, 126, 149, 409
FalI	AAGNNNNNCTT	2 cut(s)	67, 99
FatI	CATG	3 cut(s)	78, 95, 124
Fnu4HI	GCNGC	4 cut(s)	48, 205, 218, 275
Fsp4HI	GCNGC	4 cut(s)	48, 205, 218, 275
GluI	GCNGC	4 cut(s)	48, 205, 218, 275
HapII	CCGG	2 cut(s)	211, 231
HgaI	GACGC	1 cut(s)	223
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	82, 99, 128
HinfI	GANTC	2 cut(s)	113, 196
HpaII	CCGG	2 cut(s)	211, 231
HphI	GGTGA	3 cut(s)	60, 159, 347
Hpy188III	TCNNGA	3 cut(s)	125, 254, 380
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	1 cut(s)	190
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	164
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	3 cut(s)	82, 99, 128
Kzo9I	GATC	2 cut(s)	99, 346
LpnPI	CCDG	9 cut(s)	36, 45, 161, 188, 224, 239, 244, 247, 387
Lsp1109I	GCAGC	2 cut(s)	59, 286
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	2 cut(s)	101, 348
MboI	GATC	2 cut(s)	99, 346
MboII	GAAGA	3 cut(s)	75, 94, 269
MflI	RGATCY	1 cut(s)	99
MluCI	AATT	3 cut(s)	179, 226, 359
MnlI	CCTC	1 cut(s)	210
MseI	TTAA	1 cut(s)	363
MspI	CCGG	2 cut(s)	211, 231
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
NcoI	CCATGG	1 cut(s)	95
NdeII	GATC	2 cut(s)	99, 346
NlaIII	CATG	3 cut(s)	82, 99, 128
NmuCI	GTSAC	1 cut(s)	165
NspI	RCATGY	1 cut(s)	82
PagI	TCATGA	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	113, 196
PfoI	TCCNGGA	1 cut(s)	174
PkrI	GCNGC	4 cut(s)	49, 206, 219, 276
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	4 cut(s)	48, 205, 218, 275
Sau3AI	GATC	2 cut(s)	99, 346
Sau96I	GGNCC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	176
SetI	ASST	4 cut(s)	137, 167, 279, 355
SfcI	CTRYAG	2 cut(s)	136, 318
SinI	GGWCC	1 cut(s)	62
Sse9I	AATT	3 cut(s)	179, 226, 359
SsiI	CCGC	2 cut(s)	205, 218
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	2 cut(s)	95, 154
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	2 cut(s)	194, 379
TasI	AATT	3 cut(s)	179, 226, 359
TauI	GCSGC	2 cut(s)	207, 220
TfiI	GAWTC	2 cut(s)	113, 196
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	165
TseI	GCWGC	2 cut(s)	47, 274
Tsp45I	GTSAC	1 cut(s)	165
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	62
XceI	RCATGY	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.