Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012974

Physical Location & Seq

Genomic Coordinates Forward (+)

64118739 .. 64123239

Gene Structure 4501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60055

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4017 bp

ATGAAGTCACGTGAGCTGCATGCCTCTCTTAAACCCTTATTAAAATACCAGTGGCTTTTCCACACACTCACTCCACTCAGTAATGGCGTTCAAGCTTCTTCTTCTTCTTCTTCTTCTTCACCTTCTCTCTCTTACAAGCTCCATATCACTCTGAAAACCCAGACCCCATTTCTTTTTCTCTCTGTAATTCTGATGGAGTCGATAAAGTCTGTTCCTTTAGCGGTCTTACTCTTAGCATTTGGGTGGCTTCTGATCACCGTTGCAGCCATAGTTGAAGAAAACCCAGAAGCAAAAGCCCTCATTTCCTTCAAAATTGGCCTCGAAAACCCAGAAATTCTCAGCTCATGGAGGGGTTCCATTCCAGTCTGCAACTGGGTCGGCGTCTCATGCCAACTTGGCCGAGTCAACTCACTCACCCTACCCAATTTGGGCCTCAGAGGCCCACTGCCTCCTTCTCTCTTCTCTCTCCCGGACCTCGCCGTCCTCGACCTCTCCTCCAACCTCCTCCGCGGCCCAATTCCAGCCCAACTCGGTGACCTGACTCAGCTCCAGACCCTCAAACTCAGCGTTAACTCGCTCGCCGGAAAAATCCCGCCGGAGCTCGGAAAATTGTCCCGGCTGCAGACTCTTGAGCTCTCCGGAAATGGGCTCGCCGGAGAAGTCCCGGCCCACATTGGGAACTTGACCGGGCTTCAGTACTTGGACTTGGGTAACAACCTCCTCTCTGGTTCTCTACCTTTATCTCTGTTTCAAAAGCTTCAGTCTTTATCTTCATTGGACATATCCAACAATTCCTTTTCCGGTTCAATCCCACCGGAAATCGGTAACCTGAGAAACCTCACTGACCTCTACATTGGGGTGAACCGTTTTTCTGGTCCACTGCCTAAAGAAATCGGAAACCTTTCAATGCTGGAGAATTTTTTCTCTCCGGCGTGTTCTATAACCGGTCCGTTGCCGGAGGAGTTGTCCAAGCTGAAGTCTTTGAGTAAGCTTGATCTTTCTCACAACCCTTTGAGGTGTTCTATACCGAAAGAGATAGGGGAGTTGAGAGAGCTGAGTATATTGAACTTGGTGTTTTCTGAGCTCAGTGGGTTTGTCCCTGCCGAGCTGGGAAAGTGTAGGAATTTGAAGACTTTGATGCTTTCGTTTAATTCGCTTTCCGGGGAGTTGCCGGAGGAGCTTTCGGAGCTGCCAATGCTGACGTTTTCGGCTGAGAAGAACCAGCTTTCCGGGTCATTGCCGGCTTGGCTTGGGAAGTGGAGTCAGGCTGAGGCGATTTTGCTTTCGAGCAATCTGTTTTCAGGGAGGATTCCTCCTGAGATTGGGAATTGTTCTGTGCTCATGCATCTTAGCTTGAGCAACAACTTGTTGAGTGGGGCAATTCCAGAAGAGCTGTGCAATGCGGTTTCGCTTTTGGAGATTGATCTGGATAGTAATTTCCTATCTGGAACCATTGAGAATACATTTGTGGGGTGTAGGAACCTTACTCAGTTGAATTTGGTGAATAATCAGATTGGTGGTTCGATTCCTGAGTACCTTTCGGAGCTTCCTCTGATGGCGATTGACCTTGATTCAAACAACTTTACTGGTGAATTACCTACTAGCCTTTGGAGCTCTGTTAATTTGATGGAATTTTCGGCGGCTAATAATCAGTTGAAGGGTTCTCTCACCAAGGAGATTGGCAATGCTGCTGCATTGGAAAGGCTTGTTCTGAGTAACAACCAGTTGAAGGGCACCATTCCTAAGGAGATAGGGAACCTGAGTACTCTCTCTGTTCTGAACCTGAACTCTAATTTCCTTGAGGGGCAGATTCCGAGTGAGGTTAGCCTCTGCAAACTCACCACACTTGACTTGGGGAGCAACCATCTCAATGGCTCTATACCGGAGGAGATTGCGGACCTTCCTGAGTTACAGTGTCTGGTCCTTTCCCACAATGATCTGTCCGGGCCAATCCCTTCAAAGCCATCACTTTATTTTCGGCAGCTGACCATCCCCGATTTGAGCTTTGTTCAGCATGTTGGGGTCTTTGATCTCTCCTACAACAGACTGTCTGGCCCTATACCCGAAGACCTGGGCAGTTGTGTCGCTCTGGTTAATCTGTTGATCAGCAACAACATGCTCTCTGGTGGAGTTCCAAGATCACTCTCGCGCTTAACAAATCTCACAACCTTGGATTTGTCTGGGAATATGCTTACTGGTTCCATTCCTCCAGAGTTAGGTGATTCCCCCAAGCTTCAAGGTTTATATCTGGGAAATAACCAGCTTACAAGCACCATCCCAGCAAGCTTGGGTCGTTTGGGCAGTTTGGTGAAGCTGAATTTAACTGGTAATAAGTTATCAGGTGCTGTACCAACAAGTTTTGGGAACCTGAAAGAGTTAACTCACTTAGATTTGAGTTCTAACGAGCTGGATGGTGAGCTTCCTTCTTCTCTTTCAAGCATGCAGAATCTGGGAGGGTTGTACGTGCAAGAGAACAGGCTTTCTGGTCGAATAGATGAGCTGTTCTCAAACTCTATGGCTTGGAGGATTGAAACTGTCAACTTGAGCAACAACTTCCTTACTGGTGAATTGCCGCCTTCTTTGGGAAATCTGTCATACTTGTCATATTTGGATCTTCATGCAAATTTGTTTAGGGGAAAGATTCCTCCAGACCTTGGGAATCTGGTGCAACTCGAGTACTTTGATGTTTCTAGTAACCGGTTATCTGGACAGATTCCTGAGAAGGTATGCAACCTCACCAGTCTGGTTTACTTGAATTTGGCAGAAAATGGTTTGGAAGGGTCGATTCCCAGGAGTGGAATTTGCAGGGACCTTTCAAAAGTATCTGTTGTTGGTAATAGAAAATTATGTGGGAGAAGTTCGAATTTAGATTGCCGAGTCAAAAGCTTAGACAAATCAGTTGTGCTGAATGCCTGGGGACTCGCAGCAATTGTCGTTGGAAGTGCTCTGATCTCTCTTGCAGCGGTCGTGGGTCTGATCAGATGGGTTACAAGAAGTAGCCGGCAAAACGATCTTGAAGAAAGCGAGGACAGCAAGCTCAAGAGTTTCATCGATCATCATCTCTATTTCCTGGGTAACAGCCAACCAAAGGAGCCTCTGAGCATCAATATGGCCATGTTTGAGCAGCCTCTTCTGAAACTAACTTTAGTGGATATCCTTGAAGCTACAAACAATTTCTGCAAGACAAACATTATTGGAGATGGAGGCTTCGGAACTGTGTACAAGGCCACTTTGTCCAATGGGAAAACAGTTGCAGTTAAGAAGCTGAGTGAGTATAAAACCCAGGGTCACCGAGAGTTTATTGCTGAAATGGAAACCCTGGGTAAGGTGAAGCACCAAAATCTCGTTTCATTACTGGGATACTGTTCTATCAGTGAGGAGAAGCTCCTTGTTTATGAATACATGGTGAATGGGAGCCTAGACCTGTGGCTGAGAAATCGGATGGGAGCTCTTGACGTCCTAGATTGGGACAGACGTTTCAAAATTGCAATGGGTGCAGCGCGAGGCCTATCATTTCTTCACCATGAACTAATCCCCCACATCATTCACAGGGATATTAAAGCCAGCAACATCTTACTTAATGAAGACTTTGAGCCAAAGGTTGCAGACTTTGGACTTGCAAGACTGATCAGTGACTGCGAGACTCATATCACAACTGATGTTGCCGGGACATTTGGCTACATTCCACCAGAGTATGGACAAAGTGGGAGGTCGACTAAAAAGGGAGATGTCTACAGTTTTGGTGTGATACTGCTTGAATTGGTAACCGGAAAAGAGCCAACTGGACCAGACTTCAAAGAGAAGGAAGGCGGAAATTTGGTCGGCTGGGTGCTTCAGAAGGTCAAGAAGGGGCAAACTGCTGATGTTCTTGACCCCTTGGTACTCGGTGCGGAATCGAAGCAGGCCATGTTGCAAGTGCTGCAGATTGCTTGTGTGTGCCTTTGTGACAACCCTGCCGGCAGACCTACAATGCTTCAAGTGCTGAAGATCCTTAAAGGGATGAAAGATGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004888 GO:0005575 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019953 GO:0022402 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044703 GO:0045165 GO:0046777 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

1338

Amino Acids

145.03

Weight (kDa)

5.55

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	94 - 130	1.1e-08	Leucine rich repeat N-terminal domain
LRR_14	PF23598	151 - 287	2.9e-15	Leucine-rich repeat region
LRR_8	PF13855	205 - 265	1.7e-06	Leucine rich repeat
LRR_14	PF23598	224 - 334	1.7e-11	Leucine-rich repeat region
LRR_8	PF13855	230 - 289	7.8e-06	Leucine rich repeat
LRR_14	PF23598	292 - 394	1.2e-07	Leucine-rich repeat region
LRR_8	PF13855	447 - 505	9.8e-06	Leucine rich repeat
LRR_8	PF13855	719 - 779	9.8e-08	Leucine rich repeat
LRR_4	PF12799	719 - 757	2.1e-07	Leucine Rich repeats (2 copies)
LRR_8	PF13855	768 - 827	2.1e-07	Leucine rich repeat
LRR_14	PF23598	860 - 922	3.2e-06	Leucine-rich repeat region
Pkinase	PF00069	1062 - 1329	1.9e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1063 - 1330	2.4e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07280
fragaria_vesca	FvH4_7g29180
malus_domestica	MD01G1198500.v1.1 MD07G1266400.v1.1
prunus_persica	Prupe.2G292000_v2.0.a1
pyrus_communis	pycom01g20870 pycom07g24420
rosa_chinensis	RchiOBHm_Chr1g0376951
rosa_laevigata	RLG00000026557
rosa_multiflora	Rmu_sc0026264.1_g000001 Rmu_ssc0000155.1_g000035
rosa_roxburghii	Rroxscaffold_4G00281610
rosa_rugosa	Rorug01G0399800
rosa_samantha	Rh1AG417000 Rh1BG376400 Rh1CG390200 Rh1DG407100
rosa_wichuraiana	Rw1G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	479
AatII	GACGTC	1 cut(s)	3459
AccB1I	GGYRCC	1 cut(s)	1733
AccB7I	CCANNNNNTGG	2 cut(s)	2654, 3695
AccI	GTMKAC	2 cut(s)	3713, 3732
AccII	CGCG	3 cut(s)	510, 2149, 3502
AccIII	TCCGGA	1 cut(s)	638
AclWI	GGATC	2 cut(s)	2619, 3982
AcoI	YGGCCR	2 cut(s)	397, 3111
AcuI	CTGAAG	5 cut(s)	677, 743, 995, 3818, 4004
AcvI	CACGTG	1 cut(s)	11
AcyI	GRCGYC	2 cut(s)	381, 3456
AfaI	GTAC	8 cut(s)	698, 1535, 1765, 2349, 2462, 2678, 3221, 3882
AgeI	ACCGGT	2 cut(s)	944, 2697
AjnI	CCWGG	6 cut(s)	2070, 2789, 2912, 3069, 3282, 3318
AloI	GAACNNNNNNTCC	2 cut(s)	1211, 1243
Alw21I	GWGCWC	7 cut(s)	603, 636, 1086, 1341, 1616, 2947, 3451
Alw26I	GTCTC	2 cut(s)	388, 3635
AlwI	GGATC	2 cut(s)	2619, 3982
AlwNI	CAGNNNCTG	4 cut(s)	1918, 2345, 2449, 3636
Ama87I	CYCGRG	1 cut(s)	2672
Aor13HI	TCCGGA	1 cut(s)	638
AsiGI	ACCGGT	2 cut(s)	944, 2697
Asp700I	GAANNNNTTC	2 cut(s)	901, 920
AspLEI	GCGC	2 cut(s)	2151, 3502
AsuC2I	CCSGG	8 cut(s)	470, 616, 665, 688, 1162, 1231, 1945, 3667
AsuII	TTCGAA	1 cut(s)	2861
AvaI	CYCGRG	1 cut(s)	2672
AvaII	GGWCC	7 cut(s)	472, 875, 947, 1897, 1921, 2809, 3785
AxyI	CCTNAGG	1 cut(s)	1743
BaeGI	GKGCMC	1 cut(s)	1736
BalI	TGGCCA	1 cut(s)	3113
BanI	GGYRCC	1 cut(s)	1733
BanII	GRGCYC	6 cut(s)	603, 636, 651, 1086, 1616, 3451
BbrPI	CACGTG	1 cut(s)	11
BbsI	GAAGAC	3 cut(s)	1136, 2073, 3591
Bbv12I	GWGCWC	7 cut(s)	603, 636, 1086, 1341, 1616, 2947, 3451
BbvCI	CCTCAGC	1 cut(s)	1269
BceAI	ACGGC	1 cut(s)	464
BcgI	CGANNNNNNTGC	4 cut(s)	358, 392, 2065, 2099
BciT130I	CCWGG	6 cut(s)	2072, 2791, 2914, 3071, 3284, 3320
BciVI	GTATCC	1 cut(s)	3353
BclI	TGATCA	4 cut(s)	252, 2103, 2976, 3627
BcnI	CCSGG	8 cut(s)	470, 616, 665, 688, 1162, 1231, 1945, 3667
BcoDI	GTCTC	2 cut(s)	388, 3635
BfaI	CTAG	4 cut(s)	1602, 2691, 3419, 3461
BfmI	CTRYAG	3 cut(s)	620, 3733, 3920
BfuI	GTATCC	1 cut(s)	3353
BglI	GCCNNNNNGGC	3 cut(s)	396, 438, 1246
BmcAI	AGTACT	3 cut(s)	698, 1765, 2678
Bme18I	GGWCC	7 cut(s)	472, 875, 947, 1897, 1921, 2809, 3785
BmeT110I	CYCGRG	1 cut(s)	2672
BmrI	ACTGGG	2 cut(s)	382, 3365
BmsI	GCATC	3 cut(s)	1128, 1354, 3111
BmuI	ACTGGG	2 cut(s)	382, 3365
BpiI	GAAGAC	3 cut(s)	1136, 2073, 3591
BplI	GAGNNNNNCTC	4 cut(s)	1297, 1329, 2489, 2521
BpmI	CTGGAG	4 cut(s)	533, 932, 2193, 2631
Bpu10I	CCTNAGC	1 cut(s)	1269
Bpu14I	TTCGAA	1 cut(s)	2861
BpuEI	CTTGAG	5 cut(s)	650, 1375, 1820, 2563, 3023
BpuMI	CCSGG	8 cut(s)	470, 616, 665, 688, 1162, 1231, 1945, 3667
Bsa29I	ATCGAT	1 cut(s)	3051
BsaAI	YACGTR	2 cut(s)	11, 2464
BsaBI	GATNNNNATC	1 cut(s)	3057
BsaHI	GRCGYC	2 cut(s)	381, 3456
BsaWI	WCCGGW	7 cut(s)	638, 800, 814, 944, 1882, 2697, 3767
BsaXI	ACNNNNNCTCC	6 cut(s)	55, 85, 479, 509, 950, 980
Bse118I	RCCGGY	5 cut(s)	944, 1240, 2697, 3000, 3956
Bse21I	CCTNAGG	1 cut(s)	1743
Bse3DI	GCAATG	4 cut(s)	1235, 1405, 1690, 3495
Bse8I	GATNNNNATC	1 cut(s)	3057
BseAI	TCCGGA	1 cut(s)	638
BseBI	CCWGG	6 cut(s)	2072, 2791, 2914, 3071, 3284, 3320
BseCI	ATCGAT	1 cut(s)	3051
BseGI	GGATG	5 cut(s)	1989, 2274, 2416, 3447, 4005
BseJI	GATNNNNATC	1 cut(s)	3057
BseMI	GCAATG	4 cut(s)	1235, 1405, 1690, 3495
BseRI	GAGGAG	7 cut(s)	484, 494, 710, 974, 1190, 1901, 3392
BseSI	GKGCMC	1 cut(s)	1736
BseYI	CCCAGC	3 cut(s)	1108, 2278, 3825
BsgI	GTGCAG	1 cut(s)	3516
Bsh1236I	CGCG	3 cut(s)	510, 2149, 3502
Bsh1285I	CGRYCG	1 cut(s)	2967
BshNI	GGYRCC	1 cut(s)	1733
BshTI	ACCGGT	2 cut(s)	944, 2697
BshVI	ATCGAT	1 cut(s)	3051
BsiEI	CGRYCG	1 cut(s)	2967
BsiHKAI	GWGCWC	7 cut(s)	603, 636, 1086, 1341, 1616, 2947, 3451
BsiHKCI	CYCGRG	1 cut(s)	2672
BslFI	GGGAC	7 cut(s)	598, 647, 1082, 2822, 2931, 3482, 3682
BsmAI	GTCTC	2 cut(s)	388, 3635
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	7 cut(s)	598, 647, 1082, 2822, 2931, 3482, 3682
BsmI	GAATGC	1 cut(s)	2914
BsoBI	CYCGRG	1 cut(s)	2672
Bsp119I	TTCGAA	1 cut(s)	2861
Bsp1286I	GDGCHC	9 cut(s)	603, 636, 651, 1086, 1341, 1616, 1736, 2947, 3451
Bsp13I	TCCGGA	1 cut(s)	638
Bsp1407I	TGTACA	1 cut(s)	3219
BspDI	ATCGAT	1 cut(s)	3051
BspEI	TCCGGA	1 cut(s)	638
BspFNI	CGCG	3 cut(s)	510, 2149, 3502
BspMAI	CTGCAG	2 cut(s)	624, 3924
BspPI	GGATC	2 cut(s)	2619, 3982
BspQI	GCTCTTC	1 cut(s)	1383
BspT104I	TTCGAA	1 cut(s)	2861
BspT107I	GGYRCC	1 cut(s)	1733
BsrDI	GCAATG	4 cut(s)	1235, 1405, 1690, 3495
BsrFI	RCCGGY	5 cut(s)	944, 1240, 2697, 3000, 3956
BsrGI	TGTACA	1 cut(s)	3219
BssAI	RCCGGY	5 cut(s)	944, 1240, 2697, 3000, 3956
BssNI	GRCGYC	2 cut(s)	381, 3456
BssT1I	CCWWGG	4 cut(s)	1671, 2169, 2653, 3876
Bst2UI	CCWGG	6 cut(s)	2072, 2791, 2914, 3071, 3284, 3320
Bst4CI	ACNGT	9 cut(s)	259, 866, 1914, 2049, 2536, 3217, 3250, 3365, 3737
Bst6I	CTCTTC	3 cut(s)	464, 1383, 3135
BstACI	GRCGYC	2 cut(s)	381, 3456
BstAPI	GCANNNNNTGC	2 cut(s)	3494, 3919
BstAUI	TGTACA	1 cut(s)	3219
BstBAI	YACGTR	2 cut(s)	11, 2464
BstBI	TTCGAA	1 cut(s)	2861
BstDSI	CCRYGG	1 cut(s)	508
BstEII	GGTNACC	4 cut(s)	533, 824, 3287, 3763
BstENI	CCTNNNNNAGG	1 cut(s)	3323
BstF5I	GGATG	5 cut(s)	1989, 2274, 2416, 3447, 4005
BstFNI	CGCG	3 cut(s)	510, 2149, 3502
BstHHI	GCGC	2 cut(s)	2151, 3502
BstMAI	GTCTC	2 cut(s)	388, 3635
BstMCI	CGRYCG	1 cut(s)	2967
BstNI	CCWGG	6 cut(s)	2072, 2791, 2914, 3071, 3284, 3320
BstNSI	RCATGY	4 cut(s)	23, 2018, 2119, 2443
BstPI	GGTNACC	4 cut(s)	533, 824, 3287, 3763
BstSFI	CTRYAG	3 cut(s)	620, 3733, 3920
BstSLI	GKGCMC	1 cut(s)	1736
BstUI	CGCG	3 cut(s)	510, 2149, 3502
BstV2I	GAAGAC	3 cut(s)	1136, 2073, 3591
BstX2I	RGATCY	2 cut(s)	2611, 3987
BstXI	CCANNNNNNTGG	1 cut(s)	1871
BstYI	RGATCY	2 cut(s)	2611, 3987
Bsu15I	ATCGAT	1 cut(s)	3051
Bsu36I	CCTNAGG	1 cut(s)	1743
BsuI	GTATCC	1 cut(s)	3353
BsuTUI	ATCGAT	1 cut(s)	3051
BtgI	CCRYGG	1 cut(s)	508
BtsCI	GGATG	5 cut(s)	1989, 2274, 2416, 3447, 4005
BtsI	GCAGTG	2 cut(s)	443, 878
BtsIMutI	CAGTG	8 cut(s)	56, 443, 840, 878, 1093, 1919, 3379, 3637
CaiI	CAGNNNCTG	4 cut(s)	1918, 2345, 2449, 3636
CfoI	GCGC	2 cut(s)	2151, 3502
Cfr10I	RCCGGY	5 cut(s)	944, 1240, 2697, 3000, 3956
Cfr42I	CCGCGG	1 cut(s)	511
ClaI	ATCGAT	1 cut(s)	3051
CpoI	CGGWCCG	1 cut(s)	947
CseI	GACGC	1 cut(s)	370
Csp6I	GTAC	8 cut(s)	697, 1534, 1764, 2348, 2461, 2677, 3220, 3881
CspAI	ACCGGT	2 cut(s)	944, 2697
CspI	CGGWCCG	1 cut(s)	947
CviQI	GTAC	8 cut(s)	697, 1534, 1764, 2348, 2461, 2677, 3220, 3881
DrdI	GACNNNNNNGTC	1 cut(s)	479
DseDI	GACNNNNNNGTC	1 cut(s)	479
EaeI	YGGCCR	2 cut(s)	397, 3111
Eam1104I	CTCTTC	3 cut(s)	464, 1383, 3135
EarI	CTCTTC	3 cut(s)	464, 1383, 3135
EciI	GGCGGA	1 cut(s)	3825
Ecl136II	GAGCTC	5 cut(s)	601, 634, 1084, 1614, 3449
Eco130I	CCWWGG	4 cut(s)	1671, 2169, 2653, 3876
Eco147I	AGGCCT	1 cut(s)	3507
Eco24I	GRGCYC	6 cut(s)	603, 636, 651, 1086, 1616, 3451
Eco32I	GATATC	1 cut(s)	3154
Eco47I	GGWCC	7 cut(s)	472, 875, 947, 1897, 1921, 2809, 3785
Eco53kI	GAGCTC	5 cut(s)	601, 634, 1084, 1614, 3449
Eco57I	CTGAAG	5 cut(s)	677, 743, 995, 3818, 4004
Eco72I	CACGTG	1 cut(s)	11
Eco81I	CCTNAGG	1 cut(s)	1743
Eco88I	CYCGRG	1 cut(s)	2672
Eco91I	GGTNACC	4 cut(s)	533, 824, 3287, 3763
EcoICRI	GAGCTC	5 cut(s)	601, 634, 1084, 1614, 3449
EcoNI	CCTNNNNNAGG	1 cut(s)	3323
EcoO109I	RGGNCCY	1 cut(s)	2809
EcoO65I	GGTNACC	4 cut(s)	533, 824, 3287, 3763
EcoRII	CCWGG	6 cut(s)	2070, 2789, 2912, 3069, 3282, 3318
EcoRV	GATATC	1 cut(s)	3154
EcoT14I	CCWWGG	4 cut(s)	1671, 2169, 2653, 3876
EcoT22I	ATGCAT	1 cut(s)	1347
EcoT38I	GRGCYC	6 cut(s)	603, 636, 651, 1086, 1616, 3451
ErhI	CCWWGG	4 cut(s)	1671, 2169, 2653, 3876
Esp3I	CGTCTC	1 cut(s)	388
FaqI	GGGAC	7 cut(s)	598, 647, 1082, 2822, 2931, 3482, 3682
FauI	CCCGC	1 cut(s)	600
FbaI	TGATCA	4 cut(s)	252, 2103, 2976, 3627
FblI	GTMKAC	2 cut(s)	3713, 3732
FokI	GGATG	5 cut(s)	1976, 2261, 2423, 3454, 4012
FriOI	GRGCYC	6 cut(s)	603, 636, 651, 1086, 1616, 3451
FspBI	CTAG	4 cut(s)	1602, 2691, 3419, 3461
GlaI	GCGC	2 cut(s)	2150, 3501
GsaI	CCCAGC	3 cut(s)	1112, 2282, 3829
GsuI	CTGGAG	4 cut(s)	533, 932, 2193, 2631
HgaI	GACGC	1 cut(s)	370
HhaI	GCGC	2 cut(s)	2151, 3502
Hin1I	GRCGYC	2 cut(s)	381, 3456
Hin6I	GCGC	2 cut(s)	2149, 3500
HinP1I	GCGC	2 cut(s)	2149, 3500
HincII	GTYRAC	5 cut(s)	406, 571, 2379, 2539, 3714
HindII	GTYRAC	5 cut(s)	406, 571, 2379, 2539, 3714
HindIII	AAGCTT	6 cut(s)	93, 755, 989, 2231, 2284, 2884
HpaI	GTTAAC	2 cut(s)	571, 2379
HpyCH4III	ACNGT	9 cut(s)	259, 866, 1914, 2049, 2536, 3217, 3250, 3365, 3737
HpyCH4IV	ACGT	5 cut(s)	10, 1202, 2463, 3456, 3475
HpySE526I	ACGT	5 cut(s)	10, 1202, 2463, 3456, 3475
Hsp92I	GRCGYC	2 cut(s)	381, 3456
HspAI	GCGC	2 cut(s)	2149, 3500
Kpn2I	TCCGGA	1 cut(s)	638
KroI	GCCGGC	3 cut(s)	1240, 3000, 3956
KroNI	GCCGGC	3 cut(s)	1242, 3002, 3958
Ksp22I	TGATCA	4 cut(s)	252, 2103, 2976, 3627
KspAI	GTTAAC	2 cut(s)	571, 2379
KspI	CCGCGG	1 cut(s)	511
LguI	GCTCTTC	1 cut(s)	1383
LweI	GCATC	3 cut(s)	1128, 1354, 3111
MaeI	CTAG	4 cut(s)	1602, 2691, 3419, 3461
MaeII	ACGT	5 cut(s)	10, 1202, 2463, 3456, 3475
MfeI	CAATTG	1 cut(s)	2928
MflI	RGATCY	2 cut(s)	2611, 3987
MhlI	GDGCHC	9 cut(s)	603, 636, 651, 1086, 1341, 1616, 1736, 2947, 3451
MlsI	TGGCCA	1 cut(s)	3113
MluNI	TGGCCA	1 cut(s)	3113
MlyI	GAGTC	8 cut(s)	206, 411, 535, 619, 1270, 2886, 2913, 3637
MmeI	TCCRAC	3 cut(s)	522, 810, 2917
Mox20I	TGGCCA	1 cut(s)	3113
Mph1103I	ATGCAT	1 cut(s)	1347
MroI	TCCGGA	1 cut(s)	638
MroNI	GCCGGC	3 cut(s)	1240, 3000, 3956
MroXI	GAANNNNTTC	2 cut(s)	901, 920
MscI	TGGCCA	1 cut(s)	3113
MslI	CAYNNNNRTG	4 cut(s)	241, 857, 1869, 3107
Msp20I	TGGCCA	1 cut(s)	3113
MspA1I	CMGCKG	3 cut(s)	510, 1984, 2963
MunI	CAATTG	1 cut(s)	2928
Mva1269I	GAATGC	1 cut(s)	2914
MvaI	CCWGG	6 cut(s)	2072, 2791, 2914, 3071, 3284, 3320
MvnI	CGCG	3 cut(s)	510, 2149, 3502
NaeI	GCCGGC	3 cut(s)	1242, 3002, 3958
NciI	CCSGG	8 cut(s)	470, 616, 665, 688, 1162, 1231, 1945, 3667
NgoMIV	GCCGGC	3 cut(s)	1240, 3000, 3956
NmeAIII	GCCGAG	3 cut(s)	425, 1129, 2900
NmuCI	GTSAC	5 cut(s)	6, 533, 3287, 3632, 3944
NsiI	ATGCAT	1 cut(s)	1347
NspI	RCATGY	4 cut(s)	23, 2018, 2119, 2443
NspV	TTCGAA	1 cut(s)	2861
PaeI	GCATGC	2 cut(s)	23, 2443
PaeR7I	CTCGAG	1 cut(s)	2672
PasI	CCCWGGG	2 cut(s)	3283, 3319
PceI	AGGCCT	1 cut(s)	3507
PciSI	GCTCTTC	1 cut(s)	1383
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PctI	GAATGC	1 cut(s)	2914
PdiI	GCCGGC	3 cut(s)	1242, 3002, 3958
PdmI	GAANNNNTTC	2 cut(s)	901, 920
PflMI	CCANNNNNTGG	2 cut(s)	2654, 3695
PfoI	TCCNGGA	1 cut(s)	468
PinAI	ACCGGT	2 cut(s)	944, 2697
PleI	GAGTC	8 cut(s)	205, 410, 535, 619, 1269, 2885, 2913, 3637
PmaCI	CACGTG	1 cut(s)	11
PmlI	CACGTG	1 cut(s)	11
PpsI	GAGTC	8 cut(s)	205, 410, 535, 619, 1269, 2885, 2913, 3637
Ppu21I	YACGTR	2 cut(s)	11, 2464
PpuMI	RGGWCCY	1 cut(s)	2809
Psp124BI	GAGCTC	5 cut(s)	603, 636, 1086, 1616, 3451
Psp5II	RGGWCCY	1 cut(s)	2809
Psp6I	CCWGG	6 cut(s)	2070, 2789, 2912, 3069, 3282, 3318
PspCI	CACGTG	1 cut(s)	11
PspEI	GGTNACC	4 cut(s)	533, 824, 3287, 3763
PspFI	CCCAGC	3 cut(s)	1108, 2278, 3825
PspGI	CCWGG	6 cut(s)	2070, 2789, 2912, 3069, 3282, 3318
PspPPI	RGGWCCY	1 cut(s)	2809
PspXI	VCTCGAGB	1 cut(s)	2672
PstI	CTGCAG	2 cut(s)	624, 3924
PstNI	CAGNNNCTG	4 cut(s)	1918, 2345, 2449, 3636
PsuI	RGATCY	2 cut(s)	2611, 3987
PvuII	CAGCTG	1 cut(s)	1984
RsaI	GTAC	8 cut(s)	698, 1535, 1765, 2349, 2462, 2678, 3221, 3882
RsaNI	GTAC	8 cut(s)	697, 1534, 1764, 2348, 2461, 2677, 3220, 3881
RseI	CAYNNNNRTG	4 cut(s)	241, 857, 1869, 3107
Rsr2I	CGGWCCG	1 cut(s)	947
RsrII	CGGWCCG	1 cut(s)	947
SacI	GAGCTC	5 cut(s)	603, 636, 1086, 1616, 3451
SacII	CCGCGG	1 cut(s)	511
SalI	GTCGAC	1 cut(s)	3712
SapI	GCTCTTC	1 cut(s)	1383
ScaI	AGTACT	3 cut(s)	698, 1765, 2678
SchI	GAGTC	8 cut(s)	206, 411, 535, 619, 1270, 2886, 2913, 3637
SduI	GDGCHC	9 cut(s)	603, 636, 651, 1086, 1341, 1616, 1736, 2947, 3451
SfaNI	GCATC	3 cut(s)	1128, 1354, 3111
SfcI	CTRYAG	3 cut(s)	620, 3733, 3920
SfiI	GGCCNNNNNGGCC	1 cut(s)	438
Sfr274I	CTCGAG	1 cut(s)	2672
Sfr303I	CCGCGG	1 cut(s)	511
SfuI	TTCGAA	1 cut(s)	2861
SgrBI	CCGCGG	1 cut(s)	511
SinI	GGWCC	7 cut(s)	472, 875, 947, 1897, 1921, 2809, 3785
SlaI	CTCGAG	1 cut(s)	2672
SmiMI	CAYNNNNRTG	4 cut(s)	241, 857, 1869, 3107
SmlI	CTYRAG	6 cut(s)	629, 1354, 1799, 2542, 2672, 3038
SmoI	CTYRAG	6 cut(s)	629, 1354, 1799, 2542, 2672, 3038
SphI	GCATGC	2 cut(s)	23, 2443
SseBI	AGGCCT	1 cut(s)	3507
SspMI	CTAG	4 cut(s)	1602, 2691, 3419, 3461
SstI	GAGCTC	5 cut(s)	603, 636, 1086, 1616, 3451
StuI	AGGCCT	1 cut(s)	3507
StyI	CCWWGG	4 cut(s)	1671, 2169, 2653, 3876
TaaI	ACNGT	9 cut(s)	259, 866, 1914, 2049, 2536, 3217, 3250, 3365, 3737
TaiI	ACGT	5 cut(s)	13, 1205, 2466, 3459, 3478
TatI	WGTACW	4 cut(s)	696, 1763, 2676, 3219
TauI	GCSGC	3 cut(s)	513, 1643, 2575
TscAI	CASTG	8 cut(s)	56, 450, 847, 885, 1093, 1919, 3379, 3637
TseFI	GTSAC	5 cut(s)	6, 533, 3287, 3632, 3944
Tsp45I	GTSAC	5 cut(s)	6, 533, 3287, 3632, 3944
TspDTI	ATGAA	9 cut(s)	17, 762, 2606, 3037, 3339, 3411, 3540, 3597, 4016
TspGWI	ACGGA	1 cut(s)	939
TspRI	CASTG	8 cut(s)	56, 450, 847, 885, 1093, 1919, 3379, 3637
Van91I	CCANNNNNTGG	2 cut(s)	2654, 3695
VpaK11BI	GGWCC	7 cut(s)	472, 875, 947, 1897, 1921, 2809, 3785
XagI	CCTNNNNNAGG	1 cut(s)	3323
XceI	RCATGY	4 cut(s)	23, 2018, 2119, 2443
XcmI	CCANNNNNNNNNTGG	2 cut(s)	369, 1849
XhoI	CTCGAG	1 cut(s)	2672
XmiI	GTMKAC	2 cut(s)	3713, 3732
XmnI	GAANNNNTTC	2 cut(s)	901, 920
XspI	CTAG	4 cut(s)	1602, 2691, 3419, 3461
ZraI	GACGTC	1 cut(s)	3457
ZrmI	AGTACT	3 cut(s)	698, 1765, 2678
Zsp2I	ATGCAT	1 cut(s)	1347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.