Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026264.1

Orthogroup ID

OG0012974

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 582

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026264.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

aacttccttactggtgaattgccgctttcattgggaaatctgtcatacttgacatatttggatcttcatgcaaatttgtttaggggaaagattcctccagaccttgggaatctggtgcaacttgagtactttgatgtttctagtaaccggctatctggacagattcctgagaaagtatgcaacctcaccagtctggtttacttgaatttggcagaaaatggtttggaagggtcgattcccaggagtggtatttgcagggacctttcaaaagtatctgttgttggtaatagaaaattgtgtgggagaagttcgaatttagattgccgagtcaaaagcttagacaaatcagctgtgctgaatgcctggggactcgcagcaattgtcgttggaagtgctctgatctctcttgcagcggtcgtgggtctgatcagatgggttacaagaagtagccggcaaaacgatcttgaagaaagcgaggacagcaagctcaagagtttcatcgatcatcatctctatttcctgggtaacagccaaccaaaggagcctctgagcatcaatatggccatgtttgagcagcctctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004888 GO:0005575 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019953 GO:0022402 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044703 GO:0045165 GO:0046777 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

194

Amino Acids

21.29

Weight (kDa)

7.01

Isoelectric Point (pI)

26.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07280
fragaria_vesca	FvH4_7g29180
malus_domestica	MD01G1198500.v1.1 MD07G1266400.v1.1
prunus_persica	Prupe.2G292000_v2.0.a1
pyrus_communis	pycom01g20870 pycom07g24420
rosa_chinensis	RchiOBHm_Chr1g0376951
rosa_laevigata	RLG00000026557
rosa_multiflora	Rmu_sc0026264.1_g000001 Rmu_ssc0000155.1_g000035
rosa_roxburghii	Rroxscaffold_4G00281610
rosa_rugosa	Rorug01G0399800
rosa_samantha	Rh1AG417000 Rh1BG376400 Rh1CG390200 Rh1DG407100
rosa_wichuraiana	Rw1G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	104
AciI	CCGC	2 cut(s)	23, 413
AclWI	GGATC	1 cut(s)	69
AcoI	YGGCCR	1 cut(s)	561
AcsI	RAATTY	3 cut(s)	73, 205, 313
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	3 cut(s)	104, 245, 538
AgsI	TTSAA	3 cut(s)	205, 267, 467
AjnI	CCWGG	3 cut(s)	239, 362, 519
AluBI	AGCT	3 cut(s)	336, 350, 487
AluI	AGCT	3 cut(s)	336, 350, 487
Alw21I	GWGCWC	1 cut(s)	397
AlwI	GGATC	1 cut(s)	69
AoxI	GGCC	1 cut(s)	561
ApeKI	GCWGC	3 cut(s)	374, 410, 574
ApoI	RAATTY	3 cut(s)	73, 205, 313
AspS9I	GGNCC	1 cut(s)	259
AsuHPI	GGTGA	2 cut(s)	26, 178
AsuII	TTCGAA	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	259
BalI	TGGCCA	1 cut(s)	563
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	2 cut(s)	386, 422
BccI	CCATC	1 cut(s)	426
BciT130I	CCWGG	3 cut(s)	241, 364, 521
BclI	TGATCA	1 cut(s)	426
BfaI	CTAG	1 cut(s)	141
BisI	GCNGC	4 cut(s)	23, 375, 411, 575
BlsI	GCNGC	4 cut(s)	24, 376, 412, 576
BmcAI	AGTACT	1 cut(s)	128
Bme1390I	CCNGG	3 cut(s)	241, 364, 521
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	2 cut(s)	260, 543
BmrFI	CCNGG	3 cut(s)	241, 364, 521
BmsI	GCATC	1 cut(s)	561
BpmI	CTGGAG	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	311
BpuEI	CTTGAG	2 cut(s)	143, 473
Bsa29I	ATCGAT	1 cut(s)	501
BsaBI	GATNNNNATC	1 cut(s)	507
BsaJI	CCNNGG	4 cut(s)	103, 239, 363, 520
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 245, 538
Bse118I	RCCGGY	2 cut(s)	147, 450
Bse1I	ACTGG	2 cut(s)	16, 189
Bse8I	GATNNNNATC	1 cut(s)	507
BseBI	CCWGG	3 cut(s)	241, 364, 521
BseCI	ATCGAT	1 cut(s)	501
BseDI	CCNNGG	4 cut(s)	103, 239, 363, 520
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	3 cut(s)	104, 245, 538
BseMII	CTCAG	2 cut(s)	159, 539
BseNI	ACTGG	2 cut(s)	16, 189
BseXI	GCAGC	2 cut(s)	386, 422
Bsh1285I	CGRYCG	1 cut(s)	417
BshFI	GGCC	1 cut(s)	563
BshVI	ATCGAT	1 cut(s)	501
BsiEI	CGRYCG	1 cut(s)	417
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	2 cut(s)	148, 451
BslFI	GGGAC	2 cut(s)	272, 381
BslI	CCNNNNNNNGG	3 cut(s)	104, 245, 538
BsmFI	GGGAC	2 cut(s)	272, 381
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	563
Bsp119I	TTCGAA	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	5 cut(s)	61, 399, 426, 460, 502
BspACI	CCGC	2 cut(s)	23, 413
BspANI	GGCC	1 cut(s)	563
BspCNI	CTCAG	2 cut(s)	160, 540
BspDI	ATCGAT	1 cut(s)	501
BspLI	GGNNCC	2 cut(s)	260, 543
BspPI	GGATC	1 cut(s)	69
BspT104I	TTCGAA	1 cut(s)	311
BsrFI	RCCGGY	2 cut(s)	147, 450
BsrI	ACTGG	2 cut(s)	16, 189
BssAI	RCCGGY	2 cut(s)	147, 450
BssECI	CCNNGG	4 cut(s)	103, 239, 363, 520
BssMI	GATC	5 cut(s)	61, 399, 426, 460, 502
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	3 cut(s)	241, 364, 521
BstBI	TTCGAA	1 cut(s)	311
BstC8I	GCNNGC	2 cut(s)	452, 485
BstDEI	CTNAG	3 cut(s)	168, 337, 548
BstKTI	GATC	5 cut(s)	64, 402, 429, 463, 505
BstMBI	GATC	5 cut(s)	61, 399, 426, 460, 502
BstMCI	CGRYCG	1 cut(s)	417
BstMWI	GCNNNNNNNGC	1 cut(s)	480
BstNI	CCWGG	3 cut(s)	241, 364, 521
BstSCI	CCNGG	3 cut(s)	239, 362, 519
BstV1I	GCAGC	2 cut(s)	386, 422
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	563
BsuTUI	ATCGAT	1 cut(s)	501
Cac8I	GCNNGC	2 cut(s)	452, 485
Cfr10I	RCCGGY	2 cut(s)	147, 450
Cfr13I	GGNCC	1 cut(s)	259
ClaI	ATCGAT	1 cut(s)	501
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	2 cut(s)	68, 565
CviJI	RGCY	9 cut(s)	151, 336, 350, 450, 487, 531, 544, 563, 577
CviKI_1	RGCY	9 cut(s)	151, 336, 350, 450, 487, 531, 544, 563, 577
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	3 cut(s)	168, 337, 548
DpnI	GATC	5 cut(s)	63, 401, 428, 462, 504
DpnII	GATC	5 cut(s)	61, 399, 426, 460, 502
EaeI	YGGCCR	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRII	CCWGG	3 cut(s)	239, 362, 519
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	2 cut(s)	71, 568
FaiI	YATR	6 cut(s)	46, 55, 69, 178, 560, 566
FaqI	GGGAC	2 cut(s)	272, 381
FatI	CATG	2 cut(s)	67, 564
FbaI	TGATCA	1 cut(s)	426
Fnu4HI	GCNGC	4 cut(s)	23, 375, 411, 575
Fsp4HI	GCNGC	4 cut(s)	23, 375, 411, 575
FspBI	CTAG	1 cut(s)	141
GluI	GCNGC	4 cut(s)	23, 375, 411, 575
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	563
HapII	CCGG	2 cut(s)	148, 451
Hin1II	CATG	2 cut(s)	71, 568
HindIII	AAGCTT	1 cut(s)	334
HinfI	GANTC	6 cut(s)	91, 109, 163, 235, 327, 369
HpaII	CCGG	2 cut(s)	148, 451
HphI	GGTGA	2 cut(s)	26, 178
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	4 cut(s)	399, 426, 431, 549
Hpy188III	TCNNGA	5 cut(s)	98, 156, 167, 464, 490
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	221
HpyCH4V	TGCA	5 cut(s)	71, 118, 180, 255, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	480
HpyF3I	CTNAG	3 cut(s)	168, 337, 548
Hsp92II	CATG	2 cut(s)	71, 568
KroI	GCCGGC	1 cut(s)	450
KroNI	GCCGGC	1 cut(s)	452
Ksp22I	TGATCA	1 cut(s)	426
Kzo9I	GATC	5 cut(s)	61, 399, 426, 460, 502
LmnI	GCTCC	1 cut(s)	541
Lsp1109I	GCAGC	2 cut(s)	386, 422
LweI	GCATC	1 cut(s)	561
MaeI	CTAG	1 cut(s)	141
MaeIII	GTNAC	3 cut(s)	143, 436, 524
MalI	GATC	5 cut(s)	63, 401, 428, 462, 504
MboI	GATC	5 cut(s)	61, 399, 426, 460, 502
MboII	GAAGA	2 cut(s)	56, 479
MfeI	CAATTG	1 cut(s)	378
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	397
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	6 cut(s)	17, 73, 205, 293, 313, 378
MluNI	TGGCCA	1 cut(s)	563
MlyI	GAGTC	2 cut(s)	336, 363
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	4 cut(s)	105, 194, 469, 555
Mox20I	TGGCCA	1 cut(s)	563
MroNI	GCCGGC	1 cut(s)	450
MscI	TGGCCA	1 cut(s)	563
MslI	CAYNNNNRTG	1 cut(s)	557
Msp20I	TGGCCA	1 cut(s)	563
MspA1I	CMGCKG	2 cut(s)	350, 413
MspI	CCGG	2 cut(s)	148, 451
MspR9I	CCNGG	3 cut(s)	241, 364, 521
MunI	CAATTG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	3 cut(s)	241, 364, 521
MwoI	GCNNNNNNNGC	1 cut(s)	480
NaeI	GCCGGC	1 cut(s)	452
NdeII	GATC	5 cut(s)	61, 399, 426, 460, 502
NgoMIV	GCCGGC	1 cut(s)	450
NlaIII	CATG	2 cut(s)	71, 568
NlaIV	GGNNCC	2 cut(s)	260, 543
NmeAIII	GCCGAG	1 cut(s)	350
NspV	TTCGAA	1 cut(s)	311
PctI	GAATGC	1 cut(s)	364
PdiI	GCCGGC	1 cut(s)	452
PfeI	GAWTC	4 cut(s)	91, 109, 163, 235
PflMI	CCANNNNNTGG	1 cut(s)	104
PkrI	GCNGC	4 cut(s)	24, 376, 412, 576
PleI	GAGTC	2 cut(s)	335, 363
PpsI	GAGTC	2 cut(s)	335, 363
PpuMI	RGGWCCY	1 cut(s)	259
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	3 cut(s)	239, 362, 519
PspGI	CCWGG	3 cut(s)	239, 362, 519
PspN4I	GGNNCC	2 cut(s)	260, 543
PspPI	GGNCC	1 cut(s)	259
PspPPI	RGGWCCY	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	557
SatI	GCNGC	4 cut(s)	23, 375, 411, 575
Sau3AI	GATC	5 cut(s)	61, 399, 426, 460, 502
Sau96I	GGNCC	1 cut(s)	259
ScaI	AGTACT	1 cut(s)	128
SchI	GAGTC	2 cut(s)	336, 363
ScrFI	CCNGG	3 cut(s)	241, 364, 521
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	6 cut(s)	105, 186, 264, 338, 352, 489
SfaNI	GCATC	1 cut(s)	561
SfuI	TTCGAA	1 cut(s)	311
SinI	GGWCC	1 cut(s)	259
SmiMI	CAYNNNNRTG	1 cut(s)	557
SmlI	CTYRAG	2 cut(s)	122, 488
SmoI	CTYRAG	2 cut(s)	122, 488
Sse9I	AATT	6 cut(s)	17, 73, 205, 293, 313, 378
SsiI	CCGC	2 cut(s)	23, 413
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	3 cut(s)	239, 362, 519
StyI	CCWWGG	1 cut(s)	103
TaqI	TCGA	3 cut(s)	233, 311, 501
TasI	AATT	6 cut(s)	17, 73, 205, 293, 313, 378
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	4 cut(s)	91, 109, 163, 235
TseI	GCWGC	3 cut(s)	374, 410, 574
TspDTI	ATGAA	3 cut(s)	18, 56, 487
Van91I	CCANNNNNTGG	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	3 cut(s)	73, 205, 313
XspI	CTAG	1 cut(s)	141
ZrmI	AGTACT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.