Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012974

Physical Location & Seq

Genomic Coordinates Forward (+)

50822852 .. 50825726

Gene Structure 2875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0399800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAAGAAAGTGCCGGCAGCATCATCACCTTCCTGGAAGCTTCAAATCCAACAGAAGCAAGCCCCATTTGCACTTACATTGTCCACGCATGCAGTTGATTTAATTGGGAGTTCTGCACCACAACTGATGCCTTACAAGAAGAAAAGGAAACTTAGGCGGTTGGATTCACCTACACATCAAATGATGCGAGCGTTTGAGAATTACTCAGAACACTCAAGAGGACCGGTGATAATTCATCCCTATACTATGGTGGCTCCTTATAAATCCATGCACGAGACCATATTTCGTCTAGCTCAGGACAAGCTTGCACCTCTGATTATCATCCCATTCCCTGATAACCACCACCATTCTATTGTTGGCACTGCTCCCTCTAGCCCTATACGCCTAATGATCCTTAATTTACAAGCATTTTCTCAGTGTACAATTGGAATACTAGTTGACAAGGGCTTTCCTTGTCGGCCAAGTATCTCTAACTTCTCCTACATTGTGGCTATATTTTTCATTGGTGGACCAGATGACCGTGAGGCATTAGCATATGCATCACGCATGGCTGACAACCCTGACGTGGGCATCACGGTGTTCAGGATTCTCGTGCGGGTCAATAAAATAGAAAGTTTTGAGGAAGAGGAGAGAGAGTTTAAGCTAGACGAGTCATTGTTGGATGAGTTTAAGCTAAGGAACACCGGGAATAATCGGTTGAATTGGCGTGATATTGAGGTGGATGATGGTGTTGAGGCTGTGAAGGCTATTAAGAATTTGCAGGGTGAGTACGACCTAGTTATGGTGGGGCGGCGACATTGGGATGTGTCGTTGAGGGATGAAGAAATGGCAGACTTATTGCACAATCCAGAGCTGGGAGTGATTGGCGACATGCTCGCTTCTTCAGATTTCTGTGGTGGAATGGTGAATGTGTTGGTGATCGATGCAAGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004888 GO:0005575 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019953 GO:0022402 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044703 GO:0045165 GO:0046777 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

311

Amino Acids

35.16

Weight (kDa)

6.56

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHX17_C	PF23259	162 - 308	6.9e-12	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07280
fragaria_vesca	FvH4_7g29180
malus_domestica	MD01G1198500.v1.1 MD07G1266400.v1.1
prunus_persica	Prupe.2G292000_v2.0.a1
pyrus_communis	pycom01g20870 pycom07g24420
rosa_chinensis	RchiOBHm_Chr1g0376951
rosa_laevigata	RLG00000026557
rosa_multiflora	Rmu_sc0026264.1_g000001 Rmu_ssc0000155.1_g000035
rosa_roxburghii	Rroxscaffold_4G00281610
rosa_rugosa	Rorug01G0399800
rosa_samantha	Rh1AG417000 Rh1BG376400 Rh1CG390200 Rh1DG407100
rosa_wichuraiana	Rw1G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	261
AciI	CCGC	3 cut(s)	157, 595, 790
AclWI	GGATC	1 cut(s)	385
AcoI	YGGCCR	1 cut(s)	458
AcsI	RAATTY	1 cut(s)	754
AcuI	CTGAAG	1 cut(s)	867
AfaI	GTAC	2 cut(s)	421, 770
AfiI	CCNNNNNNNGG	4 cut(s)	565, 566, 781, 854
AgeI	ACCGGT	1 cut(s)	223
AgsI	TTSAA	2 cut(s)	44, 700
AhlI	ACTAGT	1 cut(s)	433
AjiI	CACGTC	1 cut(s)	565
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	6 cut(s)	40, 293, 304, 643, 673, 853
AluI	AGCT	6 cut(s)	40, 293, 304, 643, 673, 853
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	385
AoxI	GGCC	1 cut(s)	458
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	754
AsiGI	ACCGGT	1 cut(s)	223
AspS9I	GGNCC	2 cut(s)	221, 509
AsuC2I	CCSGG	1 cut(s)	685
AsuHPI	GGTGA	6 cut(s)	18, 159, 238, 776, 916, 928
AvaII	GGWCC	2 cut(s)	221, 509
BauI	CACGAG	2 cut(s)	272, 590
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	719
BciT130I	CCWGG	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	685
BcoDI	GTCTC	1 cut(s)	269
BcuI	ACTAGT	1 cut(s)	433
BfaI	CTAG	5 cut(s)	290, 372, 434, 644, 776
BisI	GCNGC	2 cut(s)	18, 791
BlsI	GCNGC	2 cut(s)	19, 792
Bme1390I	CCNGG	2 cut(s)	34, 685
Bme18I	GGWCC	2 cut(s)	221, 509
BmgBI	CACGTC	1 cut(s)	565
BmgT120I	GGNCC	2 cut(s)	221, 509
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	2 cut(s)	34, 685
BmsI	GCATC	6 cut(s)	29, 117, 174, 548, 579, 913
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
Bpu10I	CCTNAGC	2 cut(s)	294, 674
BpuEI	CTTGAG	1 cut(s)	199
BpuMI	CCSGG	1 cut(s)	685
Bsa29I	ATCGAT	1 cut(s)	921
BsaBI	GATNNNNATC	1 cut(s)	320
BsaI	GGTCTC	1 cut(s)	269
BsaWI	WCCGGW	1 cut(s)	223
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	4 cut(s)	565, 566, 781, 854
Bse118I	RCCGGY	2 cut(s)	13, 223
Bse8I	GATNNNNATC	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	34
BseCI	ATCGAT	1 cut(s)	921
BseGI	GGATG	6 cut(s)	235, 321, 667, 727, 808, 823
BseJI	GATNNNNATC	1 cut(s)	320
BseLI	CCNNNNNNNGG	4 cut(s)	565, 566, 781, 854
BseMII	CTCAG	3 cut(s)	219, 308, 428
BseRI	GAGGAG	1 cut(s)	641
BseXI	GCAGC	1 cut(s)	29
BseYI	CCCAGC	1 cut(s)	853
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	460
BshTI	ACCGGT	1 cut(s)	223
BshVI	ATCGAT	1 cut(s)	921
BsiSI	CCGG	3 cut(s)	14, 224, 684
BslI	CCNNNNNNNGG	4 cut(s)	565, 566, 781, 854
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	460
Bso31I	GGTCTC	1 cut(s)	269
Bsp1407I	TGTACA	1 cut(s)	419
Bsp143I	GATC	2 cut(s)	390, 918
BspACI	CCGC	3 cut(s)	157, 595, 790
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	3 cut(s)	218, 307, 427
BspDI	ATCGAT	1 cut(s)	921
BspLI	GGNNCC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	385
BspTNI	GGTCTC	1 cut(s)	269
BsrFI	RCCGGY	2 cut(s)	13, 223
BsrGI	TGTACA	1 cut(s)	419
BssAI	RCCGGY	2 cut(s)	13, 223
BssMI	GATC	2 cut(s)	390, 918
BssSI	CACGAG	2 cut(s)	272, 590
Bst2BI	CACGAG	2 cut(s)	272, 590
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	2 cut(s)	521, 577
Bst6I	CTCTTC	1 cut(s)	618
BstAUI	TGTACA	1 cut(s)	419
BstC8I	GCNNGC	6 cut(s)	15, 60, 90, 189, 306, 876
BstDEI	CTNAG	5 cut(s)	152, 205, 294, 414, 674
BstF5I	GGATG	6 cut(s)	235, 321, 667, 727, 808, 823
BstKTI	GATC	2 cut(s)	393, 921
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	2 cut(s)	390, 918
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 381, 743
BstNI	CCWGG	1 cut(s)	34
BstNSI	RCATGY	2 cut(s)	92, 874
BstSCI	CCNGG	2 cut(s)	32, 683
BstV1I	GCAGC	1 cut(s)	29
Bsu15I	ATCGAT	1 cut(s)	921
BsuRI	GGCC	1 cut(s)	460
BsuTUI	ATCGAT	1 cut(s)	921
BtrI	CACGTC	1 cut(s)	565
BtsCI	GGATG	6 cut(s)	235, 321, 667, 727, 808, 823
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	360, 422
Cac8I	GCNNGC	6 cut(s)	15, 60, 90, 189, 306, 876
Cfr10I	RCCGGY	2 cut(s)	13, 223
Cfr13I	GGNCC	2 cut(s)	221, 509
ClaI	ATCGAT	1 cut(s)	921
Csp6I	GTAC	2 cut(s)	420, 769
CspAI	ACCGGT	1 cut(s)	223
CviAII	CATG	4 cut(s)	89, 268, 547, 871
CviQI	GTAC	2 cut(s)	420, 769
DdeI	CTNAG	5 cut(s)	152, 205, 294, 414, 674
DpnI	GATC	2 cut(s)	392, 920
DpnII	GATC	2 cut(s)	390, 918
EaeI	YGGCCR	1 cut(s)	458
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Eco31I	GGTCTC	1 cut(s)	269
Eco47I	GGWCC	2 cut(s)	221, 509
Eco57I	CTGAAG	1 cut(s)	867
EcoRII	CCWGG	1 cut(s)	32
EcoT22I	ATGCAT	1 cut(s)	541
FaeI	CATG	4 cut(s)	92, 271, 550, 874
FatI	CATG	4 cut(s)	88, 267, 546, 870
FauI	CCCGC	1 cut(s)	588
FauNDI	CATATG	1 cut(s)	535
Fnu4HI	GCNGC	2 cut(s)	18, 791
FokI	GGATG	6 cut(s)	222, 308, 674, 734, 815, 830
Fsp4HI	GCNGC	2 cut(s)	18, 791
FspBI	CTAG	5 cut(s)	290, 372, 434, 644, 776
GluI	GCNGC	2 cut(s)	18, 791
GsaI	CCCAGC	1 cut(s)	857
HaeIII	GGCC	1 cut(s)	460
HapII	CCGG	3 cut(s)	14, 224, 684
Hin1II	CATG	4 cut(s)	92, 271, 550, 874
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HindIII	AAGCTT	2 cut(s)	38, 302
HinfI	GANTC	3 cut(s)	164, 586, 650
HpaII	CCGG	3 cut(s)	14, 224, 684
HphI	GGTGA	6 cut(s)	18, 159, 238, 776, 916, 928
Hpy166II	GTNNAC	4 cut(s)	84, 420, 439, 509
Hpy188I	TCNGA	3 cut(s)	208, 315, 886
Hpy188III	TCNNGA	4 cut(s)	216, 296, 583, 848
Hpy8I	GTNNAC	4 cut(s)	84, 420, 439, 509
HpyAV	CCTTC	2 cut(s)	39, 736
HpyCH4III	ACNGT	2 cut(s)	521, 577
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	9 cut(s)	71, 92, 116, 271, 308, 539, 760, 841, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 381, 743
HpyF3I	CTNAG	5 cut(s)	152, 205, 294, 414, 674
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	4 cut(s)	92, 271, 550, 874
KroI	GCCGGC	1 cut(s)	13
KroNI	GCCGGC	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	390, 918
LmnI	GCTCC	2 cut(s)	259, 370
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	6 cut(s)	29, 117, 174, 548, 579, 913
MaeI	CTAG	5 cut(s)	290, 372, 434, 644, 776
MaeII	ACGT	1 cut(s)	564
MalI	GATC	2 cut(s)	392, 920
MboI	GATC	2 cut(s)	390, 918
MboII	GAAGA	5 cut(s)	16, 151, 635, 833, 873
MfeI	CAATTG	1 cut(s)	423
MluCI	AATT	7 cut(s)	102, 199, 231, 397, 423, 700, 754
MlyI	GAGTC	1 cut(s)	659
MmeI	TCCRAC	3 cut(s)	73, 141, 639
MnlI	CCTC	9 cut(s)	212, 321, 379, 517, 613, 619, 709, 727, 807
Mph1103I	ATGCAT	1 cut(s)	541
MroNI	GCCGGC	1 cut(s)	13
MseI	TTAA	5 cut(s)	101, 396, 639, 669, 750
MslI	CAYNNNNRTG	2 cut(s)	575, 801
MspI	CCGG	3 cut(s)	14, 224, 684
MspR9I	CCNGG	2 cut(s)	34, 685
MunI	CAATTG	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	3 cut(s)	68, 381, 743
NaeI	GCCGGC	1 cut(s)	15
NciI	CCSGG	1 cut(s)	685
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	2 cut(s)	390, 918
NgoMIV	GCCGGC	1 cut(s)	13
NlaIII	CATG	4 cut(s)	92, 271, 550, 874
NlaIV	GGNNCC	1 cut(s)	255
NsiI	ATGCAT	1 cut(s)	541
NspI	RCATGY	2 cut(s)	92, 874
PaeI	GCATGC	1 cut(s)	92
PdiI	GCCGGC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	164, 586
PfoI	TCCNGGA	1 cut(s)	32
PinAI	ACCGGT	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	19, 792
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
PsiI	TTATAA	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	853
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	2 cut(s)	221, 509
RsaI	GTAC	2 cut(s)	421, 770
RsaNI	GTAC	2 cut(s)	420, 769
RseI	CAYNNNNRTG	2 cut(s)	575, 801
SaqAI	TTAA	5 cut(s)	101, 396, 639, 669, 750
SatI	GCNGC	2 cut(s)	18, 791
Sau3AI	GATC	2 cut(s)	390, 918
Sau96I	GGNCC	2 cut(s)	221, 509
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	2 cut(s)	34, 685
SfaNI	GCATC	6 cut(s)	29, 117, 174, 548, 579, 913
SinI	GGWCC	2 cut(s)	221, 509
SmiMI	CAYNNNNRTG	2 cut(s)	575, 801
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
SpeI	ACTAGT	1 cut(s)	433
SphI	GCATGC	1 cut(s)	92
Sse9I	AATT	7 cut(s)	102, 199, 231, 397, 423, 700, 754
SsiI	CCGC	3 cut(s)	157, 595, 790
SspMI	CTAG	5 cut(s)	290, 372, 434, 644, 776
StyD4I	CCNGG	2 cut(s)	32, 683
TaaI	ACNGT	2 cut(s)	521, 577
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	1 cut(s)	921
TasI	AATT	7 cut(s)	102, 199, 231, 397, 423, 700, 754
TatI	WGTACW	1 cut(s)	419
TauI	GCSGC	1 cut(s)	793
TfiI	GAWTC	2 cut(s)	164, 586
Tru1I	TTAA	5 cut(s)	101, 396, 639, 669, 750
Tru9I	TTAA	5 cut(s)	101, 396, 639, 669, 750
TscAI	CASTG	2 cut(s)	367, 422
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	4 cut(s)	17, 224, 490, 834
TspRI	CASTG	2 cut(s)	367, 422
VpaK11BI	GGWCC	2 cut(s)	221, 509
XapI	RAATTY	1 cut(s)	754
XceI	RCATGY	2 cut(s)	92, 874
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353
XspI	CTAG	5 cut(s)	290, 372, 434, 644, 776
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.