Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0012974

Physical Location & Seq

Genomic Coordinates Forward (+)

64909299 .. 64913893

Gene Structure 4595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG417000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3813 bp

ATGGAGTCGATAAAGTCTGTTCCTTTAGCGGTCTTAGCATTTGGGTGGCTTCTGATCACCATTGCAGCCATAGTTGAAGAAAACCCAGAAGCAAAAGCCCTCATTTCCTTCAAAATTGGCCTCGAAAACCCAGAAATTCTCAGCTCATGGAGAGGTTCCATTCCAGTCTGCAACTGGGTCGGCGTCTCATGCCAACTCGGCCGAGTCAACTCACTCACCCTACCTAATTTGGGCCTCAGAGGCCCACTGCCTCCTTCTCTCTTCTCTCTCCCGGACCTCGCCGTCCTCGACCTCTCCTCCAACCTCCTCCGCGGCCCAATTCCGGCCCAACTCGGTGACCTGACTCAGCTCCAGACCCTCAAACTCAGCGCCAACTCGCTCGCCGGAAAAATCCCGCCGGAGCTCGGAAAATTGTCCCGGCTGCAGACTCTTGAGCTCTCCGGAAATGGGCTCGCCGGAGAAGTTCCGGCCCACATTGGGAACTTGACCCGGCTCCAGTACTTGGACTTGGGTAACAACCTCCTCTCTGGTTCTCTACCTTTATCTCTGTTTCAAAAGCTTCAGTCTTTATCTTCATTGGACATATCCAACAATTCGTTTTCCGGTTCAATCCCACCGGAAATCGGTAACCTGAGAAACCTCACTGACCTCTACATTGGGGTGAACCGTTTTTCTGGTCCACTGCCTAAAGAAATCGGAAACCTTTCAATGCTGGAGAATTTTTTCTCTCCGGCGTGTTCTATAACCGGTCCGTTTCCGGAGGAGTTGTCCAAGCTGAAGTCTTTGAGTAAGCTTGATCTTTCTCACAACCCTTTGAGGTGTTCTATACCGAAAGAGATAGGGGAGTTGAGAGAGCTGAGTATATTGAACTTGGTGTTTTCTGAGCTCAGTGGGTTTGTCCCTGCCGAGCTGGGAAAGTGTAGGAATTTGAAGACTTTGATGCTTTCGTTTAATTCGCTTTCCGGGGAGTTGCCGGAGGAGCTTTCGGAGCTGCCAATGCTGACGTTTTCGGCTGAGAAGAACCAGCTTTCCGGGTCATTGCCGGCTTGGCTTGGGAAGTGGAGTCAGGCCGAGGCAATTTTGCTTTCGAGCAATCTGTTTTCAGGGAGGATTCCTCCTGAGATTGGGAATTGTTCTGTGCTCATGCATCTTAGCTTGAGCAACAACTTGTTGAGTGGTGCAATTCCAGAAGAGCTGTGCAATGCGGTTTCGCTTTTGGAGATTGATCTGGATAGTAATTTCCTTTCTGGAACCATTGAGAATACATTTGTGGGGTGTAGGAACCTTACTCAGTTGAATTTGGTGAATAATCAGATTGGTGGTTCGATTCCTGAGTACCTTTCGGAGCTTCCTCTGATGGCGATTGACCTTGATTCAAACAACTTTACTGGTGAATTACCTACTAGCCTTTGGAGCTCTGTCAATTTGATGGAATTTTCGGCGGCTAATAATCAGTTGAAGGGTTCTCTCACCAAGGAGATTGGCAATGCTGCTGCATTGGAAAGGCTTGTTCTGAGTAACAACCAGTTGAAGGGCACCATTCCTAAGGAGATAGGGAACCTGAGTACTCTCTCTGTTCTGAACCTGAACTCTAATTTCCTTGAGGGGCAGATTCCGAGTGAGGTTAGCCTCTGCAAACTCACCACACTTGACTTGGGGAGCAACCATCTCAATGGCTCTATACCGGAGGAGATTGCGGACCTTCCTGAGTTACAGTGTCTGGTCCTTTCCCACAATGATCTGTCGGGGCCAATCCCTTCAAAGCCATCACTTTATTTTCGGCAGCTGACCATCCCCGATTTGAGCTTTGTTCAGCATGTTGGGGTCTTTGATCTCTCCTACAACAGATTGTCTGGCCGTATACCCGAAGACCTGGGCAGTTGTGTCGCTCTGGTTAATCTGTTGATCAGCAACAACATGCTCTCTGGTGGAGTTCCAAGATCACTCTCGCGCTTAACAAATCTCACAACCTTGGATTTGTCTGGGAATATGCTTACTGGTTCCATTCCTCCAGAGTTAGGTGATTCCCCCAAGCTTCAAGGTTTATATCTGGGAAATAACCAGCTTACAAGCACCATCCCAGCAAGCTTGGGTCGTTTGGGCAGTTTGGTGAAGCTGAATTTAACTGGTAATAAGTTATCAGGTGCTGTACCAACAAGTTTTGGGAACCTGAAAGAGTTAACTCACTTAGATTTGAGTACTAACGAGCTGGATGGTGAGCTTCCTTCTTCTCTTTCAAGCATGCAGAATCTGGGAGGGTTGTACGTGCAAGAGAACAGGCTTTCTGGTCGAATAGATGAGCTGTTCGCGAACTCTATGGCTTGGAGGATTGAAACTGTCAACTTGAGCAACAACTTCCTTACTGGTGAATTGCCGCCTTCATTGGGAAATCTGTCATACTTGACATATTTGGATCTTCATGCAAATTTGTTTAGGGGAAAGATTCCTCCAGACCTTGGGAATCTGGTGCAACTTGAGTACTTTGATGTTTCTAGTAACCGGCTATCTGGACAGATTCCTGAGAAAGTATGCAACCTCACCAGTCTGGTTTACTTGAATTTGGCAGAAAATGGTTTGGAAGGGTCGATTCCCAGGAGTGGAATTTGCAGGGACCTTTCAAAAGTATCTTTTGTTGGTAATAGAAAATTGTGTGGGAGAAGTTCGAATTTAGATTGCCGAGGCTTAGACAAATCAGCAGTGCTGAATGCCTGGGGACTCGCAGCAATTGTCATTGGAAGTGCTCTGATCTCTCTTGCAGCGGTCGTGGGTCTGATCAGATGGGTTACAAGAAGTAGCCGGCAAAACGATCTTGAAGAAAGCGAGGACAGCAAGCTCAAGAGTTTCATCGATCATCATCTCTATTTCCTGGGTAACAGCCAACCAAAGGAGCCTCTGAGCATCAATATGGCCATGTTTGAGCAGCCTCTTCTGAAACTAACTTTAGTGGATATCCTTGAAGCTACAAACAATTTCTGCAAGACAAACATTATTGGAGATGGAGGCTTCGGAACTGTGTACAAGGCCACTTTGTCCAATGGGAAAACAGTTGCAGTTAAGAAGCTGAGTGAGTATAAAACCCAGGGTCACCGAGAGTTTATTGCTGAAATGGAAACCCTGGGTAAGGTGAAGCACCAAAATCTCGTTTCATTACTGGGATACTGTTCTATCAGTGAGGAGAAGCTCCTTGTTTATGAATACATGGTGAATGGGAGCCTAGACCTGTGGCTGAGAAATCGGATGGGAGCTCTTGACGTCCTAGATTGGGACAGACGTTTCAAAATTGCAATGGGTGCAGCGCGAGGCCTATCATTTCTTCACCATGAACTAATCCCCCACATCATTCACAGGGATATTAAAGCCAGCAACATCTTACTTAATGAAGACTTTGAGCCAAAGGTTGCAGACTTTGGACTTGCAAGACTGATCAGTGACTGCGAGACTCATATCACAACTGATGTTGCCGGGACATTTGGCTATATTCCACCAGAGTATGGACAAAGTGGGAGGTCGACTAAAAAGGGAGATGTCTACAGTTTTGGTGTGATACTGCTTGAATTGGTGACCGGAAAAGAGCCAACTGGACCAGACTTCAAAGAGAAGGAAGGCGGAAATTTGGTCGGCTGGGTGCTTCAGAAGGTCAAGAAGGGGCAAGCAGCTGATGTTCTTGACCCCTTGGTACTCAGTGCGGATTCGAAGCAGGCCATGTTGCAAGTGCTGCAGATTGCTTGTGTGTGCCTTTGTGACAACCCTGCCGGCAGACCTACAATGCTTCAAGTGCTGAAGATCCTTAAAGGGATGAAAGATGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004888 GO:0005575 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019953 GO:0022402 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044703 GO:0045165 GO:0046777 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

1270

Amino Acids

137.63

Weight (kDa)

5.32

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	28 - 64	1e-08	Leucine rich repeat N-terminal domain
LRR_14	PF23598	85 - 221	3.4e-16	Leucine-rich repeat region
LRR_14	PF23598	158 - 268	1.2e-12	Leucine-rich repeat region
LRR_14	PF23598	226 - 330	2.5e-07	Leucine-rich repeat region
LRR_8	PF13855	381 - 439	9.7e-06	Leucine rich repeat
LRR_14	PF23598	598 - 761	4.5e-08	Leucine-rich repeat region
LRR_8	PF13855	653 - 713	8.8e-08	Leucine rich repeat
LRR_4	PF12799	653 - 691	1.4e-07	Leucine Rich repeats (2 copies)
LRR_8	PF13855	702 - 761	5.6e-07	Leucine rich repeat
LRR_14	PF23598	794 - 856	3.2e-06	Leucine-rich repeat region
Pkinase	PF00069	994 - 1261	1.6e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	995 - 1262	1.4e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07280
fragaria_vesca	FvH4_7g29180
malus_domestica	MD01G1198500.v1.1 MD07G1266400.v1.1
prunus_persica	Prupe.2G292000_v2.0.a1
pyrus_communis	pycom01g20870 pycom07g24420
rosa_chinensis	RchiOBHm_Chr1g0376951
rosa_laevigata	RLG00000026557
rosa_multiflora	Rmu_sc0026264.1_g000001 Rmu_ssc0000155.1_g000035
rosa_roxburghii	Rroxscaffold_4G00281610
rosa_rugosa	Rorug01G0399800
rosa_samantha	Rh1AG417000 Rh1BG376400 Rh1CG390200 Rh1DG407100
rosa_wichuraiana	Rw1G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AatII	GACGTC	1 cut(s)	3255
AccB1I	GGYRCC	1 cut(s)	1535
AccB7I	CCANNNNNTGG	3 cut(s)	502, 2456, 3491
AccI	GTMKAC	3 cut(s)	1861, 3509, 3528
AccII	CGCG	4 cut(s)	312, 1951, 2309, 3298
AccIII	TCCGGA	2 cut(s)	440, 757
AclWI	GGATC	2 cut(s)	2421, 3778
AcoI	YGGCCR	3 cut(s)	199, 1855, 2907
AcuI	CTGAAG	4 cut(s)	545, 797, 3614, 3800
AcyI	GRCGYC	2 cut(s)	183, 3252
AfaI	GTAC	9 cut(s)	500, 1337, 1567, 2151, 2200, 2264, 2480, 3017, 3678
AgeI	ACCGGT	1 cut(s)	746
AjnI	CCWGG	6 cut(s)	1872, 2591, 2708, 2865, 3078, 3114
AloI	GAACNNNNNNTCC	2 cut(s)	1013, 1045
Alw21I	GWGCWC	7 cut(s)	405, 438, 888, 1143, 1418, 2743, 3247
Alw26I	GTCTC	2 cut(s)	190, 3431
AlwI	GGATC	2 cut(s)	2421, 3778
AlwNI	CAGNNNCTG	4 cut(s)	1720, 2147, 2251, 3432
Aor13HI	TCCGGA	2 cut(s)	440, 757
AsiGI	ACCGGT	1 cut(s)	746
Asp700I	GAANNNNTTC	2 cut(s)	703, 722
AspLEI	GCGC	3 cut(s)	371, 1953, 3298
AsuC2I	CCSGG	6 cut(s)	272, 418, 490, 964, 1033, 3463
AsuII	TTCGAA	2 cut(s)	2663, 3692
AvaII	GGWCC	7 cut(s)	274, 677, 749, 1699, 1723, 2611, 3581
AxyI	CCTNAGG	1 cut(s)	1545
BaeGI	GKGCMC	1 cut(s)	1538
BalI	TGGCCA	1 cut(s)	2909
BanI	GGYRCC	1 cut(s)	1535
BanII	GRGCYC	6 cut(s)	405, 438, 453, 888, 1418, 3247
BbsI	GAAGAC	3 cut(s)	938, 1875, 3387
Bbv12I	GWGCWC	7 cut(s)	405, 438, 888, 1143, 1418, 2743, 3247
BceAI	ACGGC	2 cut(s)	266, 1842
BcgI	CGANNNNNNTGC	4 cut(s)	160, 194, 1867, 1901
BciT130I	CCWGG	6 cut(s)	1874, 2593, 2710, 2867, 3080, 3116
BciVI	GTATCC	1 cut(s)	3149
BclI	TGATCA	4 cut(s)	54, 1905, 2772, 3423
BcnI	CCSGG	6 cut(s)	272, 418, 490, 964, 1033, 3463
BcoDI	GTCTC	2 cut(s)	190, 3431
BfaI	CTAG	4 cut(s)	1404, 2493, 3215, 3257
BfmI	CTRYAG	3 cut(s)	422, 3529, 3716
BfoI	RGCGCY	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	3149
BglI	GCCNNNNNGGC	3 cut(s)	198, 240, 1048
BmcAI	AGTACT	4 cut(s)	500, 1567, 2200, 2480
Bme18I	GGWCC	7 cut(s)	274, 677, 749, 1699, 1723, 2611, 3581
BmrI	ACTGGG	2 cut(s)	184, 3161
BmsI	GCATC	3 cut(s)	930, 1156, 2907
BmuI	ACTGGG	2 cut(s)	184, 3161
BpiI	GAAGAC	3 cut(s)	938, 1875, 3387
BplI	GAGNNNNNCTC	2 cut(s)	1099, 1131
BpmI	CTGGAG	5 cut(s)	335, 479, 734, 1995, 2433
Bpu14I	TTCGAA	2 cut(s)	2663, 3692
BpuEI	CTTGAG	6 cut(s)	452, 1177, 1622, 2365, 2495, 2819
BpuMI	CCSGG	6 cut(s)	272, 418, 490, 964, 1033, 3463
Bsa29I	ATCGAT	1 cut(s)	2847
BsaAI	YACGTR	1 cut(s)	2266
BsaBI	GATNNNNATC	1 cut(s)	2853
BsaHI	GRCGYC	2 cut(s)	183, 3252
BsaWI	WCCGGW	7 cut(s)	440, 602, 616, 746, 757, 1684, 3563
BsaXI	ACNNNNNCTCC	4 cut(s)	281, 311, 752, 782
Bse118I	RCCGGY	5 cut(s)	746, 1042, 2499, 2796, 3752
Bse21I	CCTNAGG	1 cut(s)	1545
Bse3DI	GCAATG	5 cut(s)	60, 1037, 1207, 1492, 3291
Bse8I	GATNNNNATC	1 cut(s)	2853
BseAI	TCCGGA	2 cut(s)	440, 757
BseBI	CCWGG	6 cut(s)	1874, 2593, 2710, 2867, 3080, 3116
BseCI	ATCGAT	1 cut(s)	2847
BseGI	GGATG	5 cut(s)	1791, 2076, 2218, 3243, 3801
BseJI	GATNNNNATC	1 cut(s)	2853
BseMI	GCAATG	5 cut(s)	60, 1037, 1207, 1492, 3291
BseRI	GAGGAG	7 cut(s)	286, 296, 512, 776, 992, 1703, 3188
BseSI	GKGCMC	1 cut(s)	1538
BseX3I	CGGCCG	1 cut(s)	199
BseYI	CCCAGC	3 cut(s)	910, 2080, 3621
BsgI	GTGCAG	1 cut(s)	3312
Bsh1236I	CGCG	4 cut(s)	312, 1951, 2309, 3298
Bsh1285I	CGRYCG	2 cut(s)	202, 2763
BshNI	GGYRCC	1 cut(s)	1535
BshTI	ACCGGT	1 cut(s)	746
BshVI	ATCGAT	1 cut(s)	2847
BsiEI	CGRYCG	2 cut(s)	202, 2763
BsiHKAI	GWGCWC	7 cut(s)	405, 438, 888, 1143, 1418, 2743, 3247
BslFI	GGGAC	6 cut(s)	400, 884, 2624, 2727, 3278, 3478
BsmAI	GTCTC	2 cut(s)	190, 3431
BsmBI	CGTCTC	1 cut(s)	190
BsmFI	GGGAC	6 cut(s)	400, 884, 2624, 2727, 3278, 3478
BsmI	GAATGC	1 cut(s)	2710
Bsp119I	TTCGAA	2 cut(s)	2663, 3692
Bsp1286I	GDGCHC	9 cut(s)	405, 438, 453, 888, 1143, 1418, 1538, 2743, 3247
Bsp13I	TCCGGA	2 cut(s)	440, 757
Bsp1407I	TGTACA	1 cut(s)	3015
Bsp68I	TCGCGA	1 cut(s)	2309
BspDI	ATCGAT	1 cut(s)	2847
BspEI	TCCGGA	2 cut(s)	440, 757
BspFNI	CGCG	4 cut(s)	312, 1951, 2309, 3298
BspMAI	CTGCAG	2 cut(s)	426, 3720
BspPI	GGATC	2 cut(s)	2421, 3778
BspQI	GCTCTTC	1 cut(s)	1185
BspT104I	TTCGAA	2 cut(s)	2663, 3692
BspT107I	GGYRCC	1 cut(s)	1535
BsrDI	GCAATG	5 cut(s)	60, 1037, 1207, 1492, 3291
BsrFI	RCCGGY	5 cut(s)	746, 1042, 2499, 2796, 3752
BsrGI	TGTACA	1 cut(s)	3015
BssAI	RCCGGY	5 cut(s)	746, 1042, 2499, 2796, 3752
BssNAI	GTATAC	1 cut(s)	1862
BssNI	GRCGYC	2 cut(s)	183, 3252
BssT1I	CCWWGG	4 cut(s)	1473, 1971, 2455, 3672
Bst1107I	GTATAC	1 cut(s)	1862
Bst2UI	CCWGG	6 cut(s)	1874, 2593, 2710, 2867, 3080, 3116
Bst4CI	ACNGT	7 cut(s)	668, 1716, 2338, 3013, 3046, 3161, 3533
Bst6I	CTCTTC	3 cut(s)	266, 1185, 2931
BstACI	GRCGYC	2 cut(s)	183, 3252
BstAPI	GCANNNNNTGC	2 cut(s)	3290, 3715
BstAUI	TGTACA	1 cut(s)	3015
BstBAI	YACGTR	1 cut(s)	2266
BstBI	TTCGAA	2 cut(s)	2663, 3692
BstDSI	CCRYGG	1 cut(s)	310
BstEII	GGTNACC	4 cut(s)	335, 626, 3083, 3559
BstENI	CCTNNNNNAGG	1 cut(s)	3119
BstF5I	GGATG	5 cut(s)	1791, 2076, 2218, 3243, 3801
BstFNI	CGCG	4 cut(s)	312, 1951, 2309, 3298
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	3 cut(s)	371, 1953, 3298
BstMAI	GTCTC	2 cut(s)	190, 3431
BstMCI	CGRYCG	2 cut(s)	202, 2763
BstNI	CCWGG	6 cut(s)	1874, 2593, 2710, 2867, 3080, 3116
BstNSI	RCATGY	3 cut(s)	1820, 1921, 2245
BstPI	GGTNACC	4 cut(s)	335, 626, 3083, 3559
BstSFI	CTRYAG	3 cut(s)	422, 3529, 3716
BstSLI	GKGCMC	1 cut(s)	1538
BstUI	CGCG	4 cut(s)	312, 1951, 2309, 3298
BstV2I	GAAGAC	3 cut(s)	938, 1875, 3387
BstX2I	RGATCY	2 cut(s)	2413, 3783
BstXI	CCANNNNNNTGG	1 cut(s)	1673
BstYI	RGATCY	2 cut(s)	2413, 3783
BstZ17I	GTATAC	1 cut(s)	1862
BstZI	CGGCCG	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	2847
Bsu36I	CCTNAGG	1 cut(s)	1545
BsuI	GTATCC	1 cut(s)	3149
BsuTUI	ATCGAT	1 cut(s)	2847
BtgI	CCRYGG	1 cut(s)	310
BtsCI	GGATG	5 cut(s)	1791, 2076, 2218, 3243, 3801
BtsI	GCAGTG	3 cut(s)	245, 680, 2703
BtsIMutI	CAGTG	9 cut(s)	245, 642, 680, 895, 1721, 2703, 3175, 3433, 3688
BtuMI	TCGCGA	1 cut(s)	2309
CaiI	CAGNNNCTG	4 cut(s)	1720, 2147, 2251, 3432
CfoI	GCGC	3 cut(s)	371, 1953, 3298
Cfr10I	RCCGGY	5 cut(s)	746, 1042, 2499, 2796, 3752
Cfr42I	CCGCGG	1 cut(s)	313
ClaI	ATCGAT	1 cut(s)	2847
CpoI	CGGWCCG	1 cut(s)	749
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	9 cut(s)	499, 1336, 1566, 2150, 2199, 2263, 2479, 3016, 3677
CspAI	ACCGGT	1 cut(s)	746
CspI	CGGWCCG	1 cut(s)	749
CviQI	GTAC	9 cut(s)	499, 1336, 1566, 2150, 2199, 2263, 2479, 3016, 3677
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
EaeI	YGGCCR	3 cut(s)	199, 1855, 2907
EagI	CGGCCG	1 cut(s)	199
Eam1104I	CTCTTC	3 cut(s)	266, 1185, 2931
EarI	CTCTTC	3 cut(s)	266, 1185, 2931
EciI	GGCGGA	1 cut(s)	3621
Ecl136II	GAGCTC	5 cut(s)	403, 436, 886, 1416, 3245
EclXI	CGGCCG	1 cut(s)	199
Eco130I	CCWWGG	4 cut(s)	1473, 1971, 2455, 3672
Eco147I	AGGCCT	1 cut(s)	3303
Eco24I	GRGCYC	6 cut(s)	405, 438, 453, 888, 1418, 3247
Eco32I	GATATC	1 cut(s)	2950
Eco47I	GGWCC	7 cut(s)	274, 677, 749, 1699, 1723, 2611, 3581
Eco52I	CGGCCG	1 cut(s)	199
Eco53kI	GAGCTC	5 cut(s)	403, 436, 886, 1416, 3245
Eco57I	CTGAAG	4 cut(s)	545, 797, 3614, 3800
Eco81I	CCTNAGG	1 cut(s)	1545
Eco91I	GGTNACC	4 cut(s)	335, 626, 3083, 3559
EcoICRI	GAGCTC	5 cut(s)	403, 436, 886, 1416, 3245
EcoNI	CCTNNNNNAGG	1 cut(s)	3119
EcoO109I	RGGNCCY	1 cut(s)	2611
EcoO65I	GGTNACC	4 cut(s)	335, 626, 3083, 3559
EcoRII	CCWGG	6 cut(s)	1872, 2591, 2708, 2865, 3078, 3114
EcoRV	GATATC	1 cut(s)	2950
EcoT14I	CCWWGG	4 cut(s)	1473, 1971, 2455, 3672
EcoT22I	ATGCAT	1 cut(s)	1149
EcoT38I	GRGCYC	6 cut(s)	405, 438, 453, 888, 1418, 3247
ErhI	CCWWGG	4 cut(s)	1473, 1971, 2455, 3672
Esp3I	CGTCTC	1 cut(s)	190
FaqI	GGGAC	6 cut(s)	400, 884, 2624, 2727, 3278, 3478
FauI	CCCGC	1 cut(s)	402
FbaI	TGATCA	4 cut(s)	54, 1905, 2772, 3423
FblI	GTMKAC	3 cut(s)	1861, 3509, 3528
FokI	GGATG	5 cut(s)	1778, 2063, 2225, 3250, 3808
FriOI	GRGCYC	6 cut(s)	405, 438, 453, 888, 1418, 3247
FspBI	CTAG	4 cut(s)	1404, 2493, 3215, 3257
GlaI	GCGC	3 cut(s)	370, 1952, 3297
GsaI	CCCAGC	3 cut(s)	914, 2084, 3625
GsuI	CTGGAG	5 cut(s)	335, 479, 734, 1995, 2433
HaeII	RGCGCY	1 cut(s)	372
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	3 cut(s)	371, 1953, 3298
Hin1I	GRCGYC	2 cut(s)	183, 3252
Hin6I	GCGC	3 cut(s)	369, 1951, 3296
HinP1I	GCGC	3 cut(s)	369, 1951, 3296
HincII	GTYRAC	4 cut(s)	208, 2181, 2341, 3510
HindII	GTYRAC	4 cut(s)	208, 2181, 2341, 3510
HindIII	AAGCTT	4 cut(s)	557, 791, 2033, 2086
HpaI	GTTAAC	1 cut(s)	2181
HpyCH4III	ACNGT	7 cut(s)	668, 1716, 2338, 3013, 3046, 3161, 3533
HpyCH4IV	ACGT	4 cut(s)	1004, 2265, 3252, 3271
HpySE526I	ACGT	4 cut(s)	1004, 2265, 3252, 3271
Hsp92I	GRCGYC	2 cut(s)	183, 3252
HspAI	GCGC	3 cut(s)	369, 1951, 3296
Kpn2I	TCCGGA	2 cut(s)	440, 757
KroI	GCCGGC	3 cut(s)	1042, 2796, 3752
KroNI	GCCGGC	3 cut(s)	1044, 2798, 3754
Ksp22I	TGATCA	4 cut(s)	54, 1905, 2772, 3423
KspAI	GTTAAC	1 cut(s)	2181
KspI	CCGCGG	1 cut(s)	313
LguI	GCTCTTC	1 cut(s)	1185
LweI	GCATC	3 cut(s)	930, 1156, 2907
MaeI	CTAG	4 cut(s)	1404, 2493, 3215, 3257
MaeII	ACGT	4 cut(s)	1004, 2265, 3252, 3271
MfeI	CAATTG	1 cut(s)	2724
MflI	RGATCY	2 cut(s)	2413, 3783
MhlI	GDGCHC	9 cut(s)	405, 438, 453, 888, 1143, 1418, 1538, 2743, 3247
MlsI	TGGCCA	1 cut(s)	2909
MluNI	TGGCCA	1 cut(s)	2909
MlyI	GAGTC	7 cut(s)	14, 213, 337, 421, 1072, 2709, 3433
MmeI	TCCRAC	2 cut(s)	324, 612
Mox20I	TGGCCA	1 cut(s)	2909
Mph1103I	ATGCAT	1 cut(s)	1149
MroI	TCCGGA	2 cut(s)	440, 757
MroNI	GCCGGC	3 cut(s)	1042, 2796, 3752
MroXI	GAANNNNTTC	2 cut(s)	703, 722
MscI	TGGCCA	1 cut(s)	2909
MseI	TTAA	9 cut(s)	951, 1896, 1955, 2123, 2180, 3054, 3354, 3375, 3789
MslI	CAYNNNNRTG	4 cut(s)	43, 659, 1671, 2903
Msp20I	TGGCCA	1 cut(s)	2909
MspA1I	CMGCKG	4 cut(s)	312, 1786, 2759, 3656
MunI	CAATTG	1 cut(s)	2724
Mva1269I	GAATGC	1 cut(s)	2710
MvaI	CCWGG	6 cut(s)	1874, 2593, 2710, 2867, 3080, 3116
MvnI	CGCG	4 cut(s)	312, 1951, 2309, 3298
NaeI	GCCGGC	3 cut(s)	1044, 2798, 3754
NciI	CCSGG	6 cut(s)	272, 418, 490, 964, 1033, 3463
NgoMIV	GCCGGC	3 cut(s)	1042, 2796, 3752
NmeAIII	GCCGAG	5 cut(s)	177, 227, 931, 1096, 2702
NmuCI	GTSAC	5 cut(s)	335, 3083, 3428, 3559, 3740
NruI	TCGCGA	1 cut(s)	2309
NsiI	ATGCAT	1 cut(s)	1149
NspI	RCATGY	3 cut(s)	1820, 1921, 2245
NspV	TTCGAA	2 cut(s)	2663, 3692
PaeI	GCATGC	1 cut(s)	2245
PasI	CCCWGGG	2 cut(s)	3079, 3115
PceI	AGGCCT	1 cut(s)	3303
PciSI	GCTCTTC	1 cut(s)	1185
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PctI	GAATGC	1 cut(s)	2710
PdiI	GCCGGC	3 cut(s)	1044, 2798, 3754
PdmI	GAANNNNTTC	2 cut(s)	703, 722
PflMI	CCANNNNNTGG	3 cut(s)	502, 2456, 3491
PfoI	TCCNGGA	1 cut(s)	270
PinAI	ACCGGT	1 cut(s)	746
PleI	GAGTC	7 cut(s)	13, 212, 337, 421, 1071, 2709, 3433
PpsI	GAGTC	7 cut(s)	13, 212, 337, 421, 1071, 2709, 3433
Ppu21I	YACGTR	1 cut(s)	2266
PpuMI	RGGWCCY	1 cut(s)	2611
Psp124BI	GAGCTC	5 cut(s)	405, 438, 888, 1418, 3247
Psp5II	RGGWCCY	1 cut(s)	2611
Psp6I	CCWGG	6 cut(s)	1872, 2591, 2708, 2865, 3078, 3114
PspEI	GGTNACC	4 cut(s)	335, 626, 3083, 3559
PspFI	CCCAGC	3 cut(s)	910, 2080, 3621
PspGI	CCWGG	6 cut(s)	1872, 2591, 2708, 2865, 3078, 3114
PspPPI	RGGWCCY	1 cut(s)	2611
PstI	CTGCAG	2 cut(s)	426, 3720
PstNI	CAGNNNCTG	4 cut(s)	1720, 2147, 2251, 3432
PsuI	RGATCY	2 cut(s)	2413, 3783
PvuII	CAGCTG	2 cut(s)	1786, 3656
RruI	TCGCGA	1 cut(s)	2309
RsaI	GTAC	9 cut(s)	500, 1337, 1567, 2151, 2200, 2264, 2480, 3017, 3678
RsaNI	GTAC	9 cut(s)	499, 1336, 1566, 2150, 2199, 2263, 2479, 3016, 3677
RseI	CAYNNNNRTG	4 cut(s)	43, 659, 1671, 2903
Rsr2I	CGGWCCG	1 cut(s)	749
RsrII	CGGWCCG	1 cut(s)	749
SacI	GAGCTC	5 cut(s)	405, 438, 888, 1418, 3247
SacII	CCGCGG	1 cut(s)	313
SalI	GTCGAC	1 cut(s)	3508
SapI	GCTCTTC	1 cut(s)	1185
SaqAI	TTAA	9 cut(s)	951, 1896, 1955, 2123, 2180, 3054, 3354, 3375, 3789
ScaI	AGTACT	4 cut(s)	500, 1567, 2200, 2480
SchI	GAGTC	7 cut(s)	14, 213, 337, 421, 1072, 2709, 3433
SduI	GDGCHC	9 cut(s)	405, 438, 453, 888, 1143, 1418, 1538, 2743, 3247
SfaNI	GCATC	3 cut(s)	930, 1156, 2907
SfcI	CTRYAG	3 cut(s)	422, 3529, 3716
SfiI	GGCCNNNNNGGCC	1 cut(s)	240
Sfr303I	CCGCGG	1 cut(s)	313
SfuI	TTCGAA	2 cut(s)	2663, 3692
SgrBI	CCGCGG	1 cut(s)	313
SinI	GGWCC	7 cut(s)	274, 677, 749, 1699, 1723, 2611, 3581
SmiMI	CAYNNNNRTG	4 cut(s)	43, 659, 1671, 2903
SmlI	CTYRAG	6 cut(s)	431, 1156, 1601, 2344, 2474, 2834
SmoI	CTYRAG	6 cut(s)	431, 1156, 1601, 2344, 2474, 2834
SphI	GCATGC	1 cut(s)	2245
SseBI	AGGCCT	1 cut(s)	3303
SspMI	CTAG	4 cut(s)	1404, 2493, 3215, 3257
SstI	GAGCTC	5 cut(s)	405, 438, 888, 1418, 3247
StuI	AGGCCT	1 cut(s)	3303
StyI	CCWWGG	4 cut(s)	1473, 1971, 2455, 3672
TaaI	ACNGT	7 cut(s)	668, 1716, 2338, 3013, 3046, 3161, 3533
TaiI	ACGT	4 cut(s)	1007, 2268, 3255, 3274
TatI	WGTACW	5 cut(s)	498, 1565, 2198, 2478, 3015
TauI	GCSGC	3 cut(s)	315, 1445, 2377
Tru1I	TTAA	9 cut(s)	951, 1896, 1955, 2123, 2180, 3054, 3354, 3375, 3789
Tru9I	TTAA	9 cut(s)	951, 1896, 1955, 2123, 2180, 3054, 3354, 3375, 3789
TscAI	CASTG	9 cut(s)	252, 649, 687, 895, 1721, 2703, 3175, 3433, 3688
TseFI	GTSAC	5 cut(s)	335, 3083, 3428, 3559, 3740
Tsp45I	GTSAC	5 cut(s)	335, 3083, 3428, 3559, 3740
TspDTI	ATGAA	9 cut(s)	564, 2370, 2408, 2833, 3135, 3207, 3336, 3393, 3812
TspGWI	ACGGA	1 cut(s)	741
TspRI	CASTG	9 cut(s)	252, 649, 687, 895, 1721, 2703, 3175, 3433, 3688
Van91I	CCANNNNNTGG	3 cut(s)	502, 2456, 3491
VpaK11BI	GGWCC	7 cut(s)	274, 677, 749, 1699, 1723, 2611, 3581
XagI	CCTNNNNNAGG	1 cut(s)	3119
XceI	RCATGY	3 cut(s)	1820, 1921, 2245
XcmI	CCANNNNNNNNNTGG	2 cut(s)	171, 1651
XmiI	GTMKAC	3 cut(s)	1861, 3509, 3528
XmnI	GAANNNNTTC	2 cut(s)	703, 722
XspI	CTAG	4 cut(s)	1404, 2493, 3215, 3257
ZraI	GACGTC	1 cut(s)	3253
ZrmI	AGTACT	4 cut(s)	500, 1567, 2200, 2480
Zsp2I	ATGCAT	1 cut(s)	1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.