RchiOBHm_Chr1g0382581

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017772
Physical Location & Seq
Reverse (-)
67378689 .. 67381004
2316 bp
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UTR
Exon/CDS
Intron
PRQ60555

Sequence Viewer

Length: 318 bp
ATGGTATTGATATGCTGGAATTCGACTCTTTTGATCAAACTTGTTCTCGACAGTGATACTACATTGCACCCTCTTGGCTCTCTGATTTCTTGCTACAGAACTTTGCTTGGGAGATTCAATTATGTTTCTCTTAATCATATTTATAGAGAGTGCAATATGGTTGCTGACTGCTTGGCCAAAAACAGTATTAACCATGACTATGGAGTGATTGAATTTGCCGACCCTCCTCCTCATGCTTTGCAGGCTTACTTGGATGATCTGGATTCTGTTGGTAGATCTCGAAAGATCAAAATTGGGCATGATTCTGATGCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

105

Amino Acids

11.78

Weight (kDa)

5.86

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 11 - 61 2e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 2 cut(s) 19, 212
AgsI TTSAA 2 cut(s) 118, 212
AoxI GGCC 1 cut(s) 174
ApoI RAATTY 2 cut(s) 19, 212
BalI TGGCCA 1 cut(s) 176
BclI TGATCA 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 94
BglII AGATCT 1 cut(s) 275
BmsI GCATC 1 cut(s) 298
Bse3DI GCAATG 1 cut(s) 62
BseGI GGATG 1 cut(s) 259
BseMI GCAATG 1 cut(s) 62
BseRI GAGGAG 2 cut(s) 216, 219
BshFI GGCC 1 cut(s) 176
BsnI GGCC 1 cut(s) 176
Bsp143I GATC 4 cut(s) 33, 256, 275, 285
BspANI GGCC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 62
BssMI GATC 4 cut(s) 33, 256, 275, 285
Bst4CI ACNGT 2 cut(s) 53, 185
BstC8I GCNNGC 1 cut(s) 243
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 4 cut(s) 36, 259, 278, 288
BstMBI GATC 4 cut(s) 33, 256, 275, 285
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstSFI CTRYAG 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 275
BstXI CCANNNNNNTGG 1 cut(s) 200
BstYI RGATCY 1 cut(s) 275
BsuRI GGCC 1 cut(s) 176
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 243
CviAII CATG 3 cut(s) 194, 233, 299
CviJI RGCY 3 cut(s) 78, 176, 245
CviKI_1 RGCY 3 cut(s) 78, 176, 245
DpnI GATC 4 cut(s) 35, 258, 277, 287
DpnII GATC 4 cut(s) 33, 256, 275, 285
EaeI YGGCCR 1 cut(s) 174
EcoRI GAATTC 1 cut(s) 19
FaeI CATG 3 cut(s) 197, 236, 302
FaiI YATR 9 cut(s) 13, 123, 138, 144, 158, 195, 201, 234, 300
FatI CATG 3 cut(s) 193, 232, 298
FbaI TGATCA 1 cut(s) 33
FokI GGATG 1 cut(s) 266
HaeIII GGCC 1 cut(s) 176
Hin1II CATG 3 cut(s) 197, 236, 302
HinfI GANTC 4 cut(s) 25, 114, 263, 302
Hpy188I TCNGA 2 cut(s) 84, 307
Hpy188III TCNNGA 3 cut(s) 47, 260, 279
HpyCH4III ACNGT 2 cut(s) 53, 185
HpyCH4V TGCA 3 cut(s) 67, 153, 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
Hsp92II CATG 3 cut(s) 197, 236, 302
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 4 cut(s) 33, 256, 275, 285
LpnPI CCDG 2 cut(s) 227, 245
LweI GCATC 1 cut(s) 298
MalI GATC 4 cut(s) 35, 258, 277, 287
MboI GATC 4 cut(s) 33, 256, 275, 285
MflI RGATCY 1 cut(s) 275
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 4 cut(s) 19, 118, 212, 291
MluNI TGGCCA 1 cut(s) 176
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 4 cut(s) 81, 234, 237, 240
Mox20I TGGCCA 1 cut(s) 176
MscI TGGCCA 1 cut(s) 176
MseI TTAA 2 cut(s) 132, 189
MslI CAYNNNNRTG 1 cut(s) 198
Msp20I TGGCCA 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 4 cut(s) 33, 256, 275, 285
NlaIII CATG 3 cut(s) 197, 236, 302
PfeI GAWTC 3 cut(s) 114, 263, 302
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PsuI RGATCY 1 cut(s) 275
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 2 cut(s) 132, 189
Sau3AI GATC 4 cut(s) 33, 256, 275, 285
SchI GAGTC 1 cut(s) 19
SfaNI GCATC 1 cut(s) 298
SfcI CTRYAG 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 4 cut(s) 19, 118, 212, 291
TaaI ACNGT 2 cut(s) 53, 185
TaqI TCGA 3 cut(s) 23, 48, 280
TasI AATT 4 cut(s) 19, 118, 212, 291
TfiI GAWTC 3 cut(s) 114, 263, 302
Tru1I TTAA 2 cut(s) 132, 189
Tru9I TTAA 2 cut(s) 132, 189
TscAI CASTG 1 cut(s) 58
TspRI CASTG 1 cut(s) 58
XapI RAATTY 2 cut(s) 19, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.