Rorug07G0300700

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0017772
Physical Location & Seq
Forward (+)
29836602 .. 29837180
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0300700.1

Sequence Viewer

Length: 378 bp
ATGATGATGAGTAGCATTGTGAAGAAGCTCTTGTTCTGTGGAGCAAAAGGGTTTCCCTCCACTTCAGACTCAGACGACTCTCGAGTAGTGCCTACACAAGCCGGTCATGTCCGTGTGTGTGTTGGAAGAGACATTGATCTGATGTGCAAGTTTGAGATGGAAGCCAATTACCTAAACCACCCACTCTTCCAGAGTCTACTGGAGCTCTCCGCCGAGCAAGAGTTCGGTTATTCCTACGATGGAGCCCTAAGAATAGCGTGTGATGTCGATCTGTTCCACTATCTTCTTCATCTCCTTGAAACCAGCAATCCCTCCGCCCATTACATGGAGCTTTCCGATCTCATTTCCAAGTTCTACGCTAGTGCTATCTACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

125

Amino Acids

14.08

Weight (kDa)

5.0

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 21 - 99 1.1e-16 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 325
AccI GTMKAC 1 cut(s) 196
AciI CCGC 2 cut(s) 210, 315
AcuI CTGAAG 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 1 cut(s) 299
AluBI AGCT 3 cut(s) 28, 205, 331
AluI AGCT 3 cut(s) 28, 205, 331
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 123
Ama87I CYCGRG 1 cut(s) 81
AvaI CYCGRG 1 cut(s) 81
BanII GRGCYC 2 cut(s) 207, 247
Bbv12I GWGCWC 1 cut(s) 207
BccI CCATC 2 cut(s) 151, 233
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 1 cut(s) 360
BmeT110I CYCGRG 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 267
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 267
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 325
BsmAI GTCTC 1 cut(s) 123
BsoBI CYCGRG 1 cut(s) 81
Bsp1286I GDGCHC 2 cut(s) 207, 247
Bsp143I GATC 3 cut(s) 136, 268, 337
BspACI CCGC 2 cut(s) 210, 315
BspCNI CTCAG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 101
BssMI GATC 3 cut(s) 136, 268, 337
Bst6I CTCTTC 2 cut(s) 121, 191
BstDEI CTNAG 2 cut(s) 70, 248
BstKTI GATC 3 cut(s) 139, 271, 340
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 3 cut(s) 136, 268, 337
Cfr10I RCCGGY 1 cut(s) 101
CviAII CATG 2 cut(s) 107, 325
CviJI RGCY 6 cut(s) 28, 101, 164, 205, 245, 331
CviKI_1 RGCY 6 cut(s) 28, 101, 164, 205, 245, 331
DdeI CTNAG 2 cut(s) 70, 248
DpnI GATC 3 cut(s) 138, 270, 339
DpnII GATC 3 cut(s) 136, 268, 337
Eam1104I CTCTTC 2 cut(s) 121, 191
EarI CTCTTC 2 cut(s) 121, 191
EciI GGCGGA 2 cut(s) 199, 304
Ecl136II GAGCTC 1 cut(s) 205
Eco24I GRGCYC 2 cut(s) 207, 247
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 205
EcoT38I GRGCYC 2 cut(s) 207, 247
FaeI CATG 2 cut(s) 110, 328
FaiI YATR 2 cut(s) 108, 326
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FatI CATG 2 cut(s) 106, 324
FblI GTMKAC 1 cut(s) 196
FriOI GRGCYC 2 cut(s) 207, 247
FspBI CTAG 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 221
HapII CCGG 1 cut(s) 102
Hin1II CATG 2 cut(s) 110, 328
HinfI GANTC 3 cut(s) 68, 77, 193
HpaII CCGG 1 cut(s) 102
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 4 cut(s) 67, 73, 141, 337
Hpy188III TCNNGA 2 cut(s) 81, 190
Hpy8I GTNNAC 1 cut(s) 197
HpyCH4V TGCA 1 cut(s) 147
HpyF3I CTNAG 2 cut(s) 70, 248
Hsp92II CATG 2 cut(s) 110, 328
Kzo9I GATC 3 cut(s) 136, 268, 337
LmnI GCTCC 4 cut(s) 41, 202, 242, 328
LpnPI CCDG 4 cut(s) 115, 185, 203, 316
MaeI CTAG 1 cut(s) 360
MalI GATC 3 cut(s) 138, 270, 339
MboI GATC 3 cut(s) 136, 268, 337
MboII GAAGA 5 cut(s) 34, 138, 178, 275, 278
MhlI GDGCHC 2 cut(s) 207, 247
MluCI AATT 2 cut(s) 166, 373
MlyI GAGTC 3 cut(s) 62, 71, 202
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 2 cut(s) 67, 322
MseI TTAA 1 cut(s) 376
MslI CAYNNNNRTG 1 cut(s) 111
MspI CCGG 1 cut(s) 102
NdeII GATC 3 cut(s) 136, 268, 337
NlaIII CATG 2 cut(s) 110, 328
NlaIV GGNNCC 1 cut(s) 244
NmeAIII GCCGAG 1 cut(s) 238
PaeR7I CTCGAG 1 cut(s) 81
PflMI CCANNNNNTGG 1 cut(s) 325
PleI GAGTC 3 cut(s) 62, 71, 201
PpsI GAGTC 3 cut(s) 62, 71, 201
Psp124BI GAGCTC 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 111
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 376
Sau3AI GATC 3 cut(s) 136, 268, 337
SchI GAGTC 3 cut(s) 62, 71, 202
SduI GDGCHC 2 cut(s) 207, 247
SetI ASST 4 cut(s) 30, 174, 207, 333
Sfr274I CTCGAG 1 cut(s) 81
SlaI CTCGAG 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 2 cut(s) 166, 373
SsiI CCGC 2 cut(s) 210, 315
SspMI CTAG 1 cut(s) 360
SstI GAGCTC 1 cut(s) 207
TaqI TCGA 2 cut(s) 82, 267
TasI AATT 2 cut(s) 166, 373
Tru1I TTAA 1 cut(s) 376
Tru9I TTAA 1 cut(s) 376
TspDTI ATGAA 1 cut(s) 278
TspGWI ACGGA 1 cut(s) 101
Van91I CCANNNNNTGG 1 cut(s) 325
XhoI CTCGAG 1 cut(s) 81
XmiI GTMKAC 1 cut(s) 196
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.