Ribonuclease H protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0382581 |
| rosa_multiflora | Rmu_sc0005911.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00369740 Rroxscaffold_7G00160710 |
| rosa_rugosa | Rorug01G0430700 Rorug02G0018700 Rorug02G0094300 Rorug03G0105900 Rorug04G0121800 Rorug06G0135700 Rorug06G0239700 Rorug07G0300700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 233 |
| AcsI | RAATTY | 2 cut(s) | 181, 281 |
| AgsI | TTSAA | 2 cut(s) | 91, 188 |
| Alw21I | GWGCWC | 1 cut(s) | 22 |
| Alw26I | GTCTC | 1 cut(s) | 113 |
| AoxI | GGCC | 2 cut(s) | 365, 377 |
| ApeKI | GCWGC | 2 cut(s) | 159, 162 |
| ApoI | RAATTY | 2 cut(s) | 181, 281 |
| AsuHPI | GGTGA | 1 cut(s) | 128 |
| BanII | GRGCYC | 1 cut(s) | 149 |
| Bbv12I | GWGCWC | 1 cut(s) | 22 |
| BbvI | GCAGC | 2 cut(s) | 146, 149 |
| BccI | CCATC | 1 cut(s) | 326 |
| BcoDI | GTCTC | 1 cut(s) | 113 |
| BfaI | CTAG | 1 cut(s) | 42 |
| BisI | GCNGC | 2 cut(s) | 160, 163 |
| BlpI | GCTNAGC | 1 cut(s) | 246 |
| BlsI | GCNGC | 2 cut(s) | 161, 164 |
| BmsI | GCATC | 1 cut(s) | 264 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 246 |
| BsaJI | CCNNGG | 1 cut(s) | 141 |
| BseDI | CCNNGG | 1 cut(s) | 141 |
| BseMII | CTCAG | 1 cut(s) | 108 |
| BseXI | GCAGC | 2 cut(s) | 146, 149 |
| BseYI | CCCAGC | 1 cut(s) | 4 |
| BshFI | GGCC | 2 cut(s) | 367, 379 |
| BsiHKAI | GWGCWC | 1 cut(s) | 22 |
| BsmAI | GTCTC | 1 cut(s) | 113 |
| BsnI | GGCC | 2 cut(s) | 367, 379 |
| Bsp1286I | GDGCHC | 2 cut(s) | 22, 149 |
| Bsp143I | GATC | 1 cut(s) | 325 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 246 |
| Bsp19I | CCATGG | 1 cut(s) | 141 |
| BspACI | CCGC | 1 cut(s) | 233 |
| BspANI | GGCC | 2 cut(s) | 367, 379 |
| BspCNI | CTCAG | 1 cut(s) | 109 |
| BssECI | CCNNGG | 1 cut(s) | 141 |
| BssMI | GATC | 1 cut(s) | 325 |
| BssT1I | CCWWGG | 1 cut(s) | 141 |
| Bst6I | CTCTTC | 1 cut(s) | 138 |
| BstDEI | CTNAG | 2 cut(s) | 117, 246 |
| BstDSI | CCRYGG | 1 cut(s) | 141 |
| BstKTI | GATC | 1 cut(s) | 328 |
| BstMAI | GTCTC | 1 cut(s) | 113 |
| BstMBI | GATC | 1 cut(s) | 325 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 311 |
| BstV1I | GCAGC | 2 cut(s) | 146, 149 |
| BsuRI | GGCC | 2 cut(s) | 367, 379 |
| BtgI | CCRYGG | 1 cut(s) | 141 |
| CviAII | CATG | 4 cut(s) | 142, 226, 263, 302 |
| CviJI | RGCY | 5 cut(s) | 82, 147, 291, 367, 379 |
| CviKI_1 | RGCY | 5 cut(s) | 82, 147, 291, 367, 379 |
| DdeI | CTNAG | 2 cut(s) | 117, 246 |
| DpnI | GATC | 1 cut(s) | 327 |
| DpnII | GATC | 1 cut(s) | 325 |
| Eam1104I | CTCTTC | 1 cut(s) | 138 |
| EarI | CTCTTC | 1 cut(s) | 138 |
| Eco130I | CCWWGG | 1 cut(s) | 141 |
| Eco147I | AGGCCT | 1 cut(s) | 367 |
| Eco24I | GRGCYC | 1 cut(s) | 149 |
| EcoT14I | CCWWGG | 1 cut(s) | 141 |
| EcoT38I | GRGCYC | 1 cut(s) | 149 |
| ErhI | CCWWGG | 1 cut(s) | 141 |
| FaeI | CATG | 4 cut(s) | 145, 229, 266, 305 |
| FaiI | YATR | 9 cut(s) | 37, 39, 71, 73, 143, 227, 264, 270, 303 |
| FatI | CATG | 4 cut(s) | 141, 225, 262, 301 |
| FauNDI | CATATG | 1 cut(s) | 37 |
| Fnu4HI | GCNGC | 2 cut(s) | 160, 163 |
| FriOI | GRGCYC | 1 cut(s) | 149 |
| Fsp4HI | GCNGC | 2 cut(s) | 160, 163 |
| FspBI | CTAG | 1 cut(s) | 42 |
| GluI | GCNGC | 2 cut(s) | 160, 163 |
| GsaI | CCCAGC | 1 cut(s) | 8 |
| HaeIII | GGCC | 2 cut(s) | 367, 379 |
| Hin1II | CATG | 4 cut(s) | 145, 229, 266, 305 |
| HinfI | GANTC | 2 cut(s) | 9, 354 |
| HphI | GGTGA | 1 cut(s) | 128 |
| Hpy188I | TCNGA | 2 cut(s) | 118, 174 |
| Hpy188III | TCNNGA | 2 cut(s) | 320, 329 |
| HpyCH4V | TGCA | 1 cut(s) | 165 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 311 |
| HpyF3I | CTNAG | 2 cut(s) | 117, 246 |
| Hsp92II | CATG | 4 cut(s) | 145, 229, 266, 305 |
| Kzo9I | GATC | 1 cut(s) | 325 |
| LpnPI | CCDG | 2 cut(s) | 324, 381 |
| Lsp1109I | GCAGC | 2 cut(s) | 146, 149 |
| LweI | GCATC | 1 cut(s) | 264 |
| MaeI | CTAG | 1 cut(s) | 42 |
| MaeIII | GTNAC | 2 cut(s) | 127, 337 |
| MalI | GATC | 1 cut(s) | 327 |
| MboI | GATC | 1 cut(s) | 325 |
| MboII | GAAGA | 1 cut(s) | 125 |
| MhlI | GDGCHC | 2 cut(s) | 22, 149 |
| MluCI | AATT | 3 cut(s) | 99, 181, 281 |
| MnlI | CCTC | 4 cut(s) | 53, 72, 303, 316 |
| MseI | TTAA | 2 cut(s) | 110, 275 |
| MslI | CAYNNNNRTG | 1 cut(s) | 267 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 311 |
| NcoI | CCATGG | 1 cut(s) | 141 |
| NdeI | CATATG | 1 cut(s) | 37 |
| NdeII | GATC | 1 cut(s) | 325 |
| NlaIII | CATG | 4 cut(s) | 145, 229, 266, 305 |
| NmeAIII | GCCGAG | 1 cut(s) | 322 |
| PceI | AGGCCT | 1 cut(s) | 367 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 349 |
| PfeI | GAWTC | 2 cut(s) | 9, 354 |
| PkrI | GCNGC | 2 cut(s) | 161, 164 |
| PspFI | CCCAGC | 1 cut(s) | 4 |
| RseI | CAYNNNNRTG | 1 cut(s) | 267 |
| SaqAI | TTAA | 2 cut(s) | 110, 275 |
| SatI | GCNGC | 2 cut(s) | 160, 163 |
| Sau3AI | GATC | 1 cut(s) | 325 |
| SduI | GDGCHC | 2 cut(s) | 22, 149 |
| SetI | ASST | 1 cut(s) | 28 |
| SfaNI | GCATC | 1 cut(s) | 264 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 267 |
| Sse9I | AATT | 3 cut(s) | 99, 181, 281 |
| SseBI | AGGCCT | 1 cut(s) | 367 |
| SsiI | CCGC | 1 cut(s) | 233 |
| SspMI | CTAG | 1 cut(s) | 42 |
| StuI | AGGCCT | 1 cut(s) | 367 |
| StyI | CCWWGG | 1 cut(s) | 141 |
| TaqI | TCGA | 1 cut(s) | 279 |
| TasI | AATT | 3 cut(s) | 99, 181, 281 |
| TfiI | GAWTC | 2 cut(s) | 9, 354 |
| Tru1I | TTAA | 2 cut(s) | 110, 275 |
| Tru9I | TTAA | 2 cut(s) | 110, 275 |
| TseI | GCWGC | 2 cut(s) | 159, 162 |
| TspDTI | ATGAA | 2 cut(s) | 24, 36 |
| XapI | RAATTY | 2 cut(s) | 181, 281 |
| XspI | CTAG | 1 cut(s) | 42 |