Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005911.1

Orthogroup ID

OG0017772

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1775

Gene Structure 1774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005911.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 575 bp

atgaagaaccgactggaaccgcaccgaaccgaccacttcgggtcggttcctcgggttttcggttcaaaaatcccagccctactcaaaacacaacatgtggaaaaaaaaatctcacggagcacagaatacgaggcagcctttgctcatgttaagagcaagttcacccgtgggtcaccaggagctctactgcagggattcacatcatacaaaatcacgcagaccaaagctgaaaatgcaagggcggacgctctagcaagactagccactactcctcccggtaccgatacaagcaacaccaaggttgaaacaatcaacaaaccaagcatctctgaggccttctctaaaatcttcatagttgaaccaccaagacaatcttcttggatggatcccttcatagcataccttactgatggaacactgcccatagatcaaatagcagccagacgcctcaaacatcttgatgctcttgctaacggaagtgtcagccatgactatggcattatgagttttgatacccctccccctcatgttgctagtaccttcaatgatgatctttgtgatctcccaagagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

191

Amino Acids

21.05

Weight (kDa)

9.21

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017772)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0382581
rosa_multiflora	Rmu_sc0005911.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369740 Rroxscaffold_7G00160710
rosa_rugosa	Rorug01G0430700 Rorug02G0018700 Rorug02G0094300 Rorug03G0105900 Rorug04G0121800 Rorug06G0135700 Rorug06G0239700 Rorug07G0300700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	278
AciI	CCGC	2 cut(s)	20, 242
AclWI	GGATC	2 cut(s)	380, 393
AcyI	GRCGYC	1 cut(s)	445
AfaI	GTAC	2 cut(s)	280, 538
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	4 cut(s)	66, 305, 359, 544
AjnI	CCWGG	1 cut(s)	175
AjuI	GAANNNNNNNTTGG	2 cut(s)	358, 390
AluBI	AGCT	3 cut(s)	182, 227, 572
AluI	AGCT	3 cut(s)	182, 227, 572
Alw21I	GWGCWC	2 cut(s)	122, 184
AlwI	GGATC	2 cut(s)	380, 393
Ama87I	CYCGRG	1 cut(s)	51
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	2 cut(s)	134, 437
Asp718I	GGTACC	1 cut(s)	278
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	2 cut(s)	154, 165
AvaI	CYCGRG	1 cut(s)	51
BamHI	GGATCC	1 cut(s)	385
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	184
Bbv12I	GWGCWC	2 cut(s)	122, 184
BbvI	GCAGC	2 cut(s)	146, 449
BccI	CCATC	2 cut(s)	376, 404
BciT130I	CCWGG	1 cut(s)	177
BcnI	CCSGG	1 cut(s)	276
BfaI	CTAG	4 cut(s)	251, 260, 534, 573
BfmI	CTRYAG	1 cut(s)	188
BisI	GCNGC	2 cut(s)	135, 438
BlsI	GCNGC	2 cut(s)	136, 439
Bme1390I	CCNGG	2 cut(s)	177, 276
BmeT110I	CYCGRG	1 cut(s)	51
BmiI	GGNNCC	4 cut(s)	18, 48, 280, 387
BmrFI	CCNGG	2 cut(s)	177, 276
BmsI	GCATC	2 cut(s)	333, 451
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BpuMI	CCSGG	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	199
BsaHI	GRCGYC	1 cut(s)	445
BsaJI	CCNNGG	3 cut(s)	50, 166, 297
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bse1I	ACTGG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	50, 166, 297
BseGI	GGATG	1 cut(s)	387
BseJI	GATNNNNATC	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	146, 449
BseYI	CCCAGC	1 cut(s)	73
BshFI	GGCC	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	278
BsiHKAI	GWGCWC	2 cut(s)	122, 184
BsiHKCI	CYCGRG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	276
BsnI	GGCC	1 cut(s)	335
BsoBI	CYCGRG	1 cut(s)	51
Bsp1286I	GDGCHC	2 cut(s)	122, 184
Bsp143I	GATC	4 cut(s)	385, 427, 550, 559
BspACI	CCGC	2 cut(s)	20, 242
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	1 cut(s)	322
BspLI	GGNNCC	4 cut(s)	18, 48, 280, 387
BspMAI	CTGCAG	1 cut(s)	192
BspPI	GGATC	2 cut(s)	380, 393
BspT107I	GGYRCC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	3 cut(s)	50, 166, 297
BssMI	GATC	4 cut(s)	385, 427, 550, 559
BssNI	GRCGYC	1 cut(s)	445
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	177
BstACI	GRCGYC	1 cut(s)	445
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	330
BstDSI	CCRYGG	1 cut(s)	166
BstEII	GGTNACC	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	387
BstKTI	GATC	4 cut(s)	388, 430, 553, 562
BstMBI	GATC	4 cut(s)	385, 427, 550, 559
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 233, 260
BstNI	CCWGG	1 cut(s)	177
BstNSI	RCATGY	1 cut(s)	98
BstPI	GGTNACC	1 cut(s)	171
BstSCI	CCNGG	2 cut(s)	175, 274
BstSFI	CTRYAG	1 cut(s)	188
BstV1I	GCAGC	2 cut(s)	146, 449
BstX2I	RGATCY	1 cut(s)	385
BstXI	CCANNNNNNTGG	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	335
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	387
BtsI	GCAGTG	1 cut(s)	416
BtsIMutI	CAGTG	1 cut(s)	416
CseI	GACGC	2 cut(s)	254, 453
Csp6I	GTAC	2 cut(s)	279, 537
CviAII	CATG	4 cut(s)	95, 146, 488, 527
CviJI	RGCY	9 cut(s)	77, 137, 182, 227, 263, 335, 440, 486, 572
CviKI_1	RGCY	9 cut(s)	77, 137, 182, 227, 263, 335, 440, 486, 572
CviQI	GTAC	2 cut(s)	279, 537
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	4 cut(s)	387, 429, 552, 561
DpnII	GATC	4 cut(s)	385, 427, 550, 559
EciI	GGCGGA	1 cut(s)	257
Ecl136II	GAGCTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	297
Eco147I	AGGCCT	1 cut(s)	335
Eco24I	GRGCYC	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	51
Eco91I	GGTNACC	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	4 cut(s)	98, 149, 491, 530
FalI	AAGNNNNNCTT	2 cut(s)	358, 390
FatI	CATG	4 cut(s)	94, 145, 487, 526
Fnu4HI	GCNGC	2 cut(s)	135, 438
FokI	GGATG	1 cut(s)	394
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	2 cut(s)	135, 438
FspBI	CTAG	4 cut(s)	251, 260, 534, 573
GluI	GCNGC	2 cut(s)	135, 438
GsaI	CCCAGC	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	2 cut(s)	254, 453
Hin1I	GRCGYC	1 cut(s)	445
Hin1II	CATG	4 cut(s)	98, 149, 491, 530
HinfI	GANTC	1 cut(s)	195
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	2 cut(s)	154, 165
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	1 cut(s)	162
HpyAV	CCTTC	3 cut(s)	346, 400, 550
HpyCH4V	TGCA	2 cut(s)	190, 236
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 233, 260
HpyF3I	CTNAG	1 cut(s)	330
Hsp92I	GRCGYC	1 cut(s)	445
Hsp92II	CATG	4 cut(s)	98, 149, 491, 530
KpnI	GGTACC	1 cut(s)	282
Kzo9I	GATC	4 cut(s)	385, 427, 550, 559
LmnI	GCTCC	2 cut(s)	117, 179
LpnPI	CCDG	6 cut(s)	87, 162, 176, 189, 289, 454
Lsp1109I	GCAGC	2 cut(s)	146, 449
LweI	GCATC	2 cut(s)	333, 451
MaeI	CTAG	4 cut(s)	251, 260, 534, 573
MaeIII	GTNAC	1 cut(s)	171
MalI	GATC	4 cut(s)	387, 429, 552, 561
MboI	GATC	4 cut(s)	385, 427, 550, 559
MboII	GAAGA	3 cut(s)	16, 340, 366
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	2 cut(s)	122, 184
MnlI	CCTC	7 cut(s)	60, 124, 282, 325, 458, 528, 534
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	2 cut(s)	459, 492
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	177, 276
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	140, 233, 260
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	4 cut(s)	385, 427, 550, 559
NlaIII	CATG	4 cut(s)	98, 149, 491, 530
NlaIV	GGNNCC	4 cut(s)	18, 48, 280, 387
NmuCI	GTSAC	1 cut(s)	171
NspI	RCATGY	1 cut(s)	98
PceI	AGGCCT	1 cut(s)	335
PciI	ACATGT	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	136, 439
PscI	ACATGT	1 cut(s)	94
Psp124BI	GAGCTC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	175
PspEI	GGTNACC	1 cut(s)	171
PspFI	CCCAGC	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	4 cut(s)	18, 48, 280, 387
PstI	CTGCAG	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	2 cut(s)	280, 538
RsaNI	GTAC	2 cut(s)	279, 537
RseI	CAYNNNNRTG	2 cut(s)	459, 492
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	2 cut(s)	135, 438
Sau3AI	GATC	4 cut(s)	385, 427, 550, 559
ScrFI	CCNGG	2 cut(s)	177, 276
SduI	GDGCHC	2 cut(s)	122, 184
SetI	ASST	6 cut(s)	184, 229, 303, 405, 542, 574
SfaNI	GCATC	2 cut(s)	333, 451
SfcI	CTRYAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	2 cut(s)	459, 492
SseBI	AGGCCT	1 cut(s)	335
SsiI	CCGC	2 cut(s)	20, 242
SspMI	CTAG	4 cut(s)	251, 260, 534, 573
SstI	GAGCTC	1 cut(s)	184
StuI	AGGCCT	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	175, 274
StyI	CCWWGG	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	423
TseFI	GTSAC	1 cut(s)	171
TseI	GCWGC	2 cut(s)	134, 437
Tsp45I	GTSAC	1 cut(s)	171
TspDTI	ATGAA	3 cut(s)	17, 340, 382
TspGWI	ACGGA	2 cut(s)	130, 489
TspRI	CASTG	1 cut(s)	423
XceI	RCATGY	1 cut(s)	98
XspI	CTAG	4 cut(s)	251, 260, 534, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.