Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006352

Physical Location & Seq

Genomic Coordinates Forward (+)

68398517 .. 68407793

Gene Structure 9277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60745

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2829 bp

ATGGATGAGCTCAGCCCTACTCCTGCCTCTTCGTGGCGTCCCAGCCACCTGGTCTTTACTCCATATTCCACGCAGGCTGAAGCTGCGAGCAACAAGTCCCAACCTTTACGCGTTATCAGAAGACCGTTTGTGGCAAGATTAACTAAGGACATAGTTGAAACATACCGAATCTGCAATCCACAGTTTAAGTATTCAGAAGAACTGAATCCAAAGAGATATTTGACCAGCCCGTCAATTGGAGTACTCAATGAAGGCCACGATAATGTTAACTCGGATCTTATTCTGACAGTAAACTTTGTCTTGGTCAATTTAGACACACATCGAAGATACATTGTCAAAGATGTTCTTGGCCATGGGACATTTGGCCAGGTTGCTAAATGCTGGGTTCCAGAGAATAACAGTTTTGTTGCTGTGAAGATCATTAAAAATCAACCAGCATACTATCAACAGGCACTGGTTGAAGTATCCATTTTGACAACGTTAAACAAGAAATATGATCCTGAGGACAAGCATCACATTGTTCGTATTTATGATTACTTTGTATATCATCGTCATTTGTGCATTTGTTTTGAACTGCTTGATACTAATCTGTATGAGCTTATCAAGATAAATCAATTCAGGGGGCTGTCCTTGACCATTGTCCAATTGTTCTCTAAACAAATTCTACATGGGTTAGCCCTGTTAAAGGATGCTGGGATAATTCACTGTGATCTGAAGCCAGAAAACATTCTTTTATGCACAAGTGTTAAGCCAGCAGAAATTAAAATTATTGACTTTGGATCTGCATGCATGGAAGATCGAACAGTTTACTCCTACATTCAGAGTCGTTACTACAGGTCCCCTGAAGTCCTGCTTGGATATCAATATACTACTGCTATCGATATGTGGTCCTTTGGATGCATAGTTGCTGAACTGTTCCTAGGATTGCCATTATTTCCAGGAGCTTCAGAATTTGACCTCTTAAGGAGAATGATTGAAATACTTGGAGGGCAACCCCCTGATCATGTACTTAAGGAGGCAAAAAACACAAGCAAGTTCTTTAAGTGCATTCGGAGTGTGCACAGTATGGAGAACGGAGAATTTTCTGCAACTGGAAAAAGTTCTTATCAAGCTTTAACAGAGGAAGAATATGAAGCTAGAGAATTGAAAAGACCATCAATTGGGAAGGAGTATTTTAATCATATGAACCTTGAAGAAATTGTTACAAAATATCCATATCGGAAGAACTTGCCTAAGGAAGATATGATTAAAGAAAGTCAGATACGATTAGCTTTGGTTGATTTTTTGAGGGGCCTTGTTGAGTTTGATCCTTCAAAACGCTGGTCACCTTTTCAGGCTTCAAAACACCCTTTTGTTACGGGGGAACCTTTTACTTGCCCTTATCAACCTCCATTAGAGACTCCTCGCATGCCCGTTGCTCAAAACATAAGGGTAGATCATCATCCTGGTGGTGGGCATTGGTTTGCTGCGGGTCTCTCTCCTAATATTCCAGGCAGAAACAGGGTTTCCATGCATAGCAGCCCACATTTTCAGGTGGTGCCGCCATATGCACATGCTAATAGCTATGGCAGTGTAGGAAGCCATGGCAGTTATAATGATGGTACTGGACTTGGAAGCAGCTTTGGAAGCTATGGAGATACTGGTAATATGTTTGCTTATTATTCACCAGTTGGTCCATCTGGGATGAACATGCATGCTCAAGGCAATGCATCAATGCTTGGAAGTAGTCCTGATGCAAGACGGAGGATTATCCCATATTCACATGGAAATGGACTTGGTATGAGCCCTTCGGCAGGAAGTTTTGCTCCTCTGCCCCTAGGCACTAGTCCTTCACAATTTACTCCACCAAGTTCCTACGGTCAAGTTTCTGCTGGCTCCCCGGGACATTATGGTCCAACTTCTCCAGCAAGAGGCAGTTGTCACGGATCACCTTTAGGAAAGATGGCTGCAGTTAGTCAGTTCAATAGAAGAAAAAGTTGGGGATATCCTGGAGGTTCTCAAACTCAGGAGAGTTCGTCTTCGCATTGGCAAGGGCAAACTACAGATGGCATCAGTTCTGGCAAAGCTGAGGGGAATTCTCAAGTAGTTGGTGGTTCCCCATCACATCTGCCTCTAAGTTCTAGTGCTGGAAGCTGGAAACAGCAGCGAGGAGGCAGTGGAAGTTCTGCTGGCTACTTAGCCACTCCAAACATGCCAAGCTCCTTCAAGGTTGGTTCCAATATCCCAAAGACCACAGGAGTGGCTCATGACAATTCGGAGGCTAGCCTGTCACTGCCTGATCCTGGGGATTGGGATCCCAATTATAGCGATGAACTTCTTCTGCAAGAAGATGGTTCGGATACAAGCTGCTTTACTACTGAGTTCAGCAATGGCATGCATCTTAATTCCGCAGAAACATTGGGTGGGGTTGGAAGATTCAGCAGCATGTCAAGTACAAGCTCCGGTCTTTCCTTACACAGACAAAGTGGCCCAATGCAATCATTCTCACATGCAGAGGTGGGTAGCCCTCCAACTGGTGAACCACTTGCTGGATATGTGCGTTTGTCAAAACCTTCTCATTTCATGCCTCATATATCTCAAAATTCTCCAAGCCGTTTGGGCCAGCAATCTCAGCGGTTCAATCACGGAAGACCGAGCAATTCTCGGGGTAATGATTGGAATCATATGAAGGTGCAGCCCCCTCCTCCCAATTTTAACTCTGGAGGCCCACATTCTCCAGGAAATAGCTCATTCAGCAACGGCATGTCATGGGGGCGTAGAGCCAGTCATCCGGTCATTAGCGTTCCACCTGCATCACGTGGAAGAAAGGACTATGGACGAATTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0030587 GO:0031152 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0035556 GO:0036211 GO:0040011 GO:0042221 GO:0042330 GO:0042493 GO:0042594 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045472 GO:0046677 GO:0048518 GO:0048519 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051409 GO:0051703 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0071704 GO:0090702 GO:0097327 GO:0098630 GO:0098743 GO:0099120 GO:0140096 GO:1901564 GO:1901654 GO:1901700 GO:1904643

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

942

Amino Acids

103.37

Weight (kDa)

8.73

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	110 - 452	2.6e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	113 - 324	2.1e-21	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35980 AT5G35980 AT5G35980
fragaria_vesca	FvH4_7g34270 FvH4_7g34270 FvH4_7g34270 FvH4_7g34270
malus_domestica	MD01G1239700.v1.1 MD07G1311600.v1.1
prunus_persica	Prupe.2G329600_v2.0.a1 Prupe.2G329600_v2.0.a1
pyrus_communis	pycom07g28380
rosa_chinensis	RchiOBHm_Chr1g0384621
rosa_laevigata	RLG00000026026
rosa_multiflora	Rmu_co8382885.1_g000001 Rmu_sc0012136.1_g000028
rosa_roxburghii	Rroxscaffold_1G00045450
rosa_rugosa	Rorug01G0450200
rosa_samantha	Rh1AG474700 Rh1BG432800 Rh1CG446000 Rh1DG465400 Rh2AG390000 Rh3CG154800 Rh3DG155900 Rh4CG245100
rosa_wichuraiana	Rw1G039790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1593
AarI	CACCTGC	1 cut(s)	2797
AasI	GACNNNNNNGTC	2 cut(s)	229, 1890
Acc36I	ACCTGC	1 cut(s)	2797
AccB1I	GGYRCC	1 cut(s)	1537
AccB7I	CCANNNNNTGG	2 cut(s)	1160, 2528
AccII	CGCG	1 cut(s)	111
AciI	CCGC	4 cut(s)	1469, 1541, 2388, 2614
AclI	AACGTT	1 cut(s)	479
AclWI	GGATC	8 cut(s)	282, 491, 787, 1301, 1933, 2273, 2288, 2301
AcoI	YGGCCR	2 cut(s)	349, 364
AcsI	RAATTY	5 cut(s)	660, 950, 1079, 2074, 2581
AcuI	CTGAAG	4 cut(s)	99, 734, 864, 930
AcvI	CACGTG	1 cut(s)	2798
AcyI	GRCGYC	1 cut(s)	37
AfaI	GTAC	4 cut(s)	243, 1008, 1603, 2434
AflII	CTTAAG	2 cut(s)	961, 1010
AflIII	ACRYGT	1 cut(s)	109
AhlI	ACTAGT	1 cut(s)	1823
AjnI	CCWGG	8 cut(s)	48, 366, 937, 1444, 1489, 1987, 2281, 2716
AjuI	GAANNNNNNNTTGG	4 cut(s)	837, 869, 1960, 1992
AleI	CACNNNNGTG	1 cut(s)	2237
Alw21I	GWGCWC	2 cut(s)	12, 1062
Alw26I	GTCTC	2 cut(s)	1391, 1478
Alw44I	GTGCAC	1 cut(s)	1058
AlwI	GGATC	8 cut(s)	282, 491, 787, 1301, 1933, 2273, 2288, 2301
AlwNI	CAGNNNCTG	1 cut(s)	454
Ama87I	CYCGRG	2 cut(s)	1879, 2643
AoxI	GGCC	7 cut(s)	253, 349, 364, 1291, 2467, 2599, 2704
ApaLI	GTGCAC	1 cut(s)	1058
ApeKI	GCWGC	9 cut(s)	83, 1466, 1518, 1617, 1946, 2143, 2346, 2421, 2674
ApoI	RAATTY	5 cut(s)	660, 950, 1079, 2074, 2581
ArsI	GACNNNNNNTTYG	2 cut(s)	1307, 1339
Asp700I	GAANNNNTTC	3 cut(s)	726, 1099, 2316
AspA2I	CCTAGG	2 cut(s)	919, 1816
AspS9I	GGNCC	8 cut(s)	837, 888, 1291, 1673, 1892, 2468, 2599, 2705
AsuC2I	CCSGG	2 cut(s)	1880, 1881
AsuHPI	GGTGA	4 cut(s)	1317, 1656, 1920, 2528
AsuNHI	GCTAGC	1 cut(s)	2261
AvaI	CYCGRG	2 cut(s)	1879, 2643
AvaII	GGWCC	4 cut(s)	837, 888, 1673, 1892
AvrII	CCTAGG	2 cut(s)	919, 1816
AxyI	CCTNAGG	2 cut(s)	501, 1233
BaeGI	GKGCMC	1 cut(s)	1062
BalI	TGGCCA	2 cut(s)	351, 366
BamHI	GGATCC	1 cut(s)	2293
BanI	GGYRCC	1 cut(s)	1537
BanII	GRGCYC	2 cut(s)	12, 1787
BarI	GAAGNNNNNNTAC	2 cut(s)	1771, 1803
BbrPI	CACGTG	1 cut(s)	2798
BbsI	GAAGAC	3 cut(s)	127, 2010, 2635
Bbv12I	GWGCWC	2 cut(s)	12, 1062
BbvCI	CCTCAGC	1 cut(s)	2067
BbvI	GCAGC	9 cut(s)	70, 1453, 1530, 1629, 1933, 2155, 2333, 2433, 2686
BccI	CCATC	7 cut(s)	1162, 1592, 1684, 1936, 2039, 2107, 2324
BceAI	ACGGC	2 cut(s)	2577, 2755
BciT130I	CCWGG	8 cut(s)	50, 368, 939, 1446, 1491, 1989, 2283, 2718
BciVI	GTATCC	2 cut(s)	475, 2332
BclI	TGATCA	1 cut(s)	1000
BcnI	CCSGG	2 cut(s)	1880, 1881
BcoDI	GTCTC	2 cut(s)	1391, 1478
BcuI	ACTAGT	1 cut(s)	1823
BfaI	CTAG	6 cut(s)	920, 1137, 1817, 1824, 2121, 2262
BfmI	CTRYAG	3 cut(s)	832, 1947, 2040
BfrI	CTTAAG	2 cut(s)	961, 1010
BfuAI	ACCTGC	1 cut(s)	2797
BfuI	GTATCC	2 cut(s)	475, 2332
BglI	GCCNNNNNGGC	1 cut(s)	2598
BlnI	CCTAGG	2 cut(s)	919, 1816
BlpI	GCTNAGC	1 cut(s)	11
BmcAI	AGTACT	1 cut(s)	243
Bme18I	GGWCC	4 cut(s)	837, 888, 1673, 1892
BmeT110I	CYCGRG	2 cut(s)	1879, 2643
BmgT120I	GGNCC	8 cut(s)	837, 888, 1291, 1673, 1892, 2468, 2599, 2705
BmiI	GGNNCC	9 cut(s)	387, 839, 1292, 1365, 1539, 1876, 2095, 2215, 2295
BmsI	GCATC	8 cut(s)	520, 679, 887, 1718, 1723, 2058, 2386, 2801
BmtI	GCTAGC	1 cut(s)	2265
BoxI	GACNNNNGTC	1 cut(s)	638
BpiI	GAAGAC	3 cut(s)	127, 2010, 2635
BplI	GAGNNNNNCTC	2 cut(s)	2626, 2658
BpmI	CTGGAG	4 cut(s)	1887, 2010, 2700, 2721
Bpu10I	CCTNAGC	1 cut(s)	2067
Bpu1102I	GCTNAGC	1 cut(s)	11
BpuEI	CTTGAG	2 cut(s)	1683, 2064
BpuMI	CCSGG	2 cut(s)	1880, 1881
Bsa29I	ATCGAT	1 cut(s)	879
BsaAI	YACGTR	1 cut(s)	2798
BsaBI	GATNNNNATC	4 cut(s)	585, 1440, 2292, 2658
BsaHI	GRCGYC	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	1478
BsaJI	CCNNGG	7 cut(s)	352, 919, 1582, 1816, 1878, 1879, 2282
BsaWI	WCCGGW	2 cut(s)	2441, 2770
BsaXI	ACNNNNNCTCC	2 cut(s)	2000, 2030
Bse1I	ACTGG	7 cut(s)	459, 1096, 1609, 1645, 1667, 2518, 2763
Bse21I	CCTNAGG	2 cut(s)	501, 1233
Bse3DI	GCAATG	2 cut(s)	1711, 2374
Bse8I	GATNNNNATC	4 cut(s)	585, 1440, 2292, 2658
BseBI	CCWGG	8 cut(s)	50, 368, 939, 1446, 1491, 1989, 2283, 2718
BseCI	ATCGAT	1 cut(s)	879
BseDI	CCNNGG	7 cut(s)	352, 919, 1582, 1816, 1878, 1879, 2282
BseGI	GGATG	6 cut(s)	10, 694, 902, 1441, 1689, 2767
BseJI	GATNNNNATC	4 cut(s)	585, 1440, 2292, 2658
BseMI	GCAATG	2 cut(s)	1711, 2374
BseMII	CTCAG	6 cut(s)	25, 492, 2018, 2058, 2349, 2624
BseNI	ACTGG	7 cut(s)	459, 1096, 1609, 1645, 1667, 2518, 2763
BseRI	GAGGAG	4 cut(s)	1392, 1797, 2163, 2673
BseSI	GKGCMC	1 cut(s)	1062
BseXI	GCAGC	9 cut(s)	70, 1453, 1530, 1629, 1933, 2155, 2333, 2433, 2686
BseYI	CCCAGC	3 cut(s)	41, 381, 692
BsgI	GTGCAG	1 cut(s)	2693
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	7 cut(s)	255, 351, 366, 1293, 2469, 2601, 2706
BshNI	GGYRCC	1 cut(s)	1537
BshVI	ATCGAT	1 cut(s)	879
BsiHKAI	GWGCWC	2 cut(s)	12, 1062
BsiHKCI	CYCGRG	2 cut(s)	1879, 2643
BsiSI	CCGG	3 cut(s)	1880, 2442, 2771
BslFI	GGGAC	5 cut(s)	24, 82, 370, 823, 1896
BsmAI	GTCTC	2 cut(s)	1391, 1478
BsmFI	GGGAC	5 cut(s)	24, 82, 370, 823, 1896
BsmI	GAATGC	1 cut(s)	1047
BsnI	GGCC	7 cut(s)	255, 351, 366, 1293, 2469, 2601, 2706
Bso31I	GGTCTC	1 cut(s)	1478
BsoBI	CYCGRG	2 cut(s)	1879, 2643
Bsp1286I	GDGCHC	3 cut(s)	12, 1062, 1787
Bsp1720I	GCTNAGC	1 cut(s)	11
Bsp19I	CCATGG	2 cut(s)	352, 1582
BspACI	CCGC	4 cut(s)	1469, 1541, 2388, 2614
BspANI	GGCC	7 cut(s)	255, 351, 366, 1293, 2469, 2601, 2706
BspCNI	CTCAG	6 cut(s)	24, 493, 2017, 2059, 2350, 2623
BspDI	ATCGAT	1 cut(s)	879
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	2245
BspLI	GGNNCC	9 cut(s)	387, 839, 1292, 1365, 1539, 1876, 2095, 2215, 2295
BspMAI	CTGCAG	1 cut(s)	1951
BspMI	ACCTGC	1 cut(s)	2797
BspOI	GCTAGC	1 cut(s)	2265
BspPI	GGATC	8 cut(s)	282, 491, 787, 1301, 1933, 2273, 2288, 2301
BspT107I	GGYRCC	1 cut(s)	1537
BspTI	CTTAAG	2 cut(s)	961, 1010
BspTNI	GGTCTC	1 cut(s)	1478
BsrDI	GCAATG	2 cut(s)	1711, 2374
BsrI	ACTGG	7 cut(s)	459, 1096, 1609, 1645, 1667, 2518, 2763
BssECI	CCNNGG	7 cut(s)	352, 919, 1582, 1816, 1878, 1879, 2282
BssNI	GRCGYC	1 cut(s)	37
BssT1I	CCWWGG	4 cut(s)	352, 919, 1582, 1816
Bst2UI	CCWGG	8 cut(s)	50, 368, 939, 1446, 1491, 1989, 2283, 2718
Bst4CI	ACNGT	9 cut(s)	126, 183, 289, 401, 707, 805, 915, 1064, 1859
Bst6I	CTCTTC	1 cut(s)	34
BstACI	GRCGYC	1 cut(s)	37
BstAFI	CTTAAG	2 cut(s)	961, 1010
BstBAI	YACGTR	1 cut(s)	2798
BstDSI	CCRYGG	2 cut(s)	352, 1582
BstEII	GGTNACC	1 cut(s)	1323
BstENI	CCTNNNNNAGG	2 cut(s)	683, 1791
BstF5I	GGATG	6 cut(s)	10, 694, 902, 1441, 1689, 2767
BstFNI	CGCG	1 cut(s)	111
BstMAI	GTCTC	2 cut(s)	1391, 1478
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 1626, 2598, 2611, 2733
BstNI	CCWGG	8 cut(s)	50, 368, 939, 1446, 1491, 1989, 2283, 2718
BstPAI	GACNNNNGTC	1 cut(s)	638
BstPI	GGTNACC	1 cut(s)	1323
BstSFI	CTRYAG	3 cut(s)	832, 1947, 2040
BstSLI	GKGCMC	1 cut(s)	1062
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	9 cut(s)	70, 1453, 1530, 1629, 1933, 2155, 2333, 2433, 2686
BstV2I	GAAGAC	3 cut(s)	127, 2010, 2635
BstX2I	RGATCY	3 cut(s)	274, 779, 2293
BstXI	CCANNNNNNTGG	2 cut(s)	49, 2239
BstYI	RGATCY	3 cut(s)	274, 779, 2293
Bsu15I	ATCGAT	1 cut(s)	879
Bsu36I	CCTNAGG	2 cut(s)	501, 1233
BsuI	GTATCC	2 cut(s)	475, 2332
BsuRI	GGCC	7 cut(s)	255, 351, 366, 1293, 2469, 2601, 2706
BsuTUI	ATCGAT	1 cut(s)	879
BtgI	CCRYGG	2 cut(s)	352, 1582
BtgZI	GCGATG	1 cut(s)	2322
BtsCI	GGATG	6 cut(s)	10, 694, 902, 1441, 1689, 2767
BtsI	GCAGTG	3 cut(s)	1576, 2161, 2270
BtsIMutI	CAGTG	5 cut(s)	452, 703, 1576, 2161, 2270
BveI	ACCTGC	1 cut(s)	2797
CaiI	CAGNNNCTG	1 cut(s)	454
CciI	TCATGA	1 cut(s)	2245
Cfr13I	GGNCC	8 cut(s)	837, 888, 1291, 1673, 1892, 2468, 2599, 2705
Cfr9I	CCCGGG	1 cut(s)	1879
ClaI	ATCGAT	1 cut(s)	879
CseI	GACGC	1 cut(s)	26
CsiI	ACCWGGT	1 cut(s)	48
Csp6I	GTAC	4 cut(s)	242, 1007, 1602, 2433
CviQI	GTAC	4 cut(s)	242, 1007, 1602, 2433
DrdI	GACNNNNNNGTC	2 cut(s)	229, 1890
DseDI	GACNNNNNNGTC	2 cut(s)	229, 1890
EaeI	YGGCCR	2 cut(s)	349, 364
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	10
Eco130I	CCWWGG	4 cut(s)	352, 919, 1582, 1816
Eco24I	GRGCYC	2 cut(s)	12, 1787
Eco31I	GGTCTC	1 cut(s)	1478
Eco32I	GATATC	2 cut(s)	860, 1985
Eco47I	GGWCC	4 cut(s)	837, 888, 1673, 1892
Eco53kI	GAGCTC	1 cut(s)	10
Eco57I	CTGAAG	4 cut(s)	99, 734, 864, 930
Eco72I	CACGTG	1 cut(s)	2798
Eco81I	CCTNAGG	2 cut(s)	501, 1233
Eco88I	CYCGRG	2 cut(s)	1879, 2643
Eco91I	GGTNACC	1 cut(s)	1323
EcoICRI	GAGCTC	1 cut(s)	10
EcoNI	CCTNNNNNAGG	2 cut(s)	683, 1791
EcoO109I	RGGNCCY	2 cut(s)	837, 1291
EcoO65I	GGTNACC	1 cut(s)	1323
EcoRI	GAATTC	1 cut(s)	2074
EcoRII	CCWGG	8 cut(s)	48, 366, 937, 1444, 1489, 1987, 2281, 2716
EcoRV	GATATC	2 cut(s)	860, 1985
EcoT14I	CCWWGG	4 cut(s)	352, 919, 1582, 1816
EcoT22I	ATGCAT	6 cut(s)	791, 902, 1515, 1695, 1711, 2379
EcoT38I	GRGCYC	2 cut(s)	12, 1787
ErhI	CCWWGG	4 cut(s)	352, 919, 1582, 1816
FalI	AAGNNNNNCTT	4 cut(s)	330, 362, 837, 869
FaqI	GGGAC	5 cut(s)	24, 82, 370, 823, 1896
FauI	CCCGC	1 cut(s)	1462
FauNDI	CATATG	3 cut(s)	1182, 1546, 2664
FbaI	TGATCA	1 cut(s)	1000
FokI	GGATG	6 cut(s)	17, 701, 909, 1428, 1696, 2754
FriOI	GRGCYC	2 cut(s)	12, 1787
FspBI	CTAG	6 cut(s)	920, 1137, 1817, 1824, 2121, 2262
GsaI	CCCAGC	3 cut(s)	45, 385, 696
GsuI	CTGGAG	4 cut(s)	1887, 2010, 2700, 2721
HaeIII	GGCC	7 cut(s)	255, 351, 366, 1293, 2469, 2601, 2706
HapII	CCGG	3 cut(s)	1880, 2442, 2771
HgaI	GACGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	37
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	1110
HinfI	GANTC	6 cut(s)	168, 205, 823, 1399, 2415, 2659
HpaI	GTTAAC	1 cut(s)	268
HpaII	CCGG	3 cut(s)	1880, 2442, 2771
HphI	GGTGA	4 cut(s)	1317, 1656, 1920, 2528
Hpy166II	GTNNAC	5 cut(s)	268, 292, 808, 1060, 2519
Hpy188III	TCNNGA	7 cut(s)	389, 500, 604, 1730, 2006, 2246, 2700
Hpy8I	GTNNAC	5 cut(s)	268, 292, 808, 1060, 2519
HpyAV	CCTTC	8 cut(s)	245, 1159, 1320, 1797, 1839, 2212, 2562, 2662
HpyCH4III	ACNGT	9 cut(s)	126, 183, 289, 401, 707, 805, 915, 1064, 1859
HpyCH4IV	ACGT	2 cut(s)	479, 2797
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 1626, 2598, 2611, 2733
HpySE526I	ACGT	2 cut(s)	479, 2797
Hsp92I	GRCGYC	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	1000
KspAI	GTTAAC	1 cut(s)	268
LmnI	GCTCC	5 cut(s)	941, 1810, 1880, 2204, 2444
Lsp1109I	GCAGC	9 cut(s)	70, 1453, 1530, 1629, 1933, 2155, 2333, 2433, 2686
LweI	GCATC	8 cut(s)	520, 679, 887, 1718, 1723, 2058, 2386, 2801
MabI	ACCWGGT	1 cut(s)	48
MaeI	CTAG	6 cut(s)	920, 1137, 1817, 1824, 2121, 2262
MaeII	ACGT	2 cut(s)	479, 2797
MaeIII	GTNAC	6 cut(s)	827, 1201, 1323, 1354, 1919, 2268
MfeI	CAATTG	3 cut(s)	234, 644, 1158
MflI	RGATCY	3 cut(s)	274, 779, 2293
MhlI	GDGCHC	3 cut(s)	12, 1062, 1787
MlsI	TGGCCA	2 cut(s)	351, 366
MluI	ACGCGT	1 cut(s)	109
MluNI	TGGCCA	2 cut(s)	351, 366
MlyI	GAGTC	2 cut(s)	832, 1393
MmeI	TCCRAC	3 cut(s)	1919, 2389, 2534
Mox20I	TGGCCA	2 cut(s)	351, 366
Mph1103I	ATGCAT	6 cut(s)	791, 902, 1515, 1695, 1711, 2379
MroXI	GAANNNNTTC	3 cut(s)	726, 1099, 2316
MscI	TGGCCA	2 cut(s)	351, 366
MslI	CAYNNNNRTG	4 cut(s)	261, 1446, 1767, 2237
Msp20I	TGGCCA	2 cut(s)	351, 366
MspA1I	CMGCKG	1 cut(s)	2614
MspCI	CTTAAG	2 cut(s)	961, 1010
MspI	CCGG	3 cut(s)	1880, 2442, 2771
MunI	CAATTG	3 cut(s)	234, 644, 1158
Mva1269I	GAATGC	1 cut(s)	1047
MvaI	CCWGG	8 cut(s)	50, 368, 939, 1446, 1491, 1989, 2283, 2718
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	5 cut(s)	83, 1626, 2598, 2611, 2733
NciI	CCSGG	2 cut(s)	1880, 1881
NcoI	CCATGG	2 cut(s)	352, 1582
NdeI	CATATG	3 cut(s)	1182, 1546, 2664
NheI	GCTAGC	1 cut(s)	2261
NlaIV	GGNNCC	9 cut(s)	387, 839, 1292, 1365, 1539, 1876, 2095, 2215, 2295
NmuCI	GTSAC	3 cut(s)	1323, 1919, 2268
NsiI	ATGCAT	6 cut(s)	791, 902, 1515, 1695, 1711, 2379
OliI	CACNNNNGTG	1 cut(s)	2237
PaeI	GCATGC	4 cut(s)	789, 1411, 1697, 2377
PagI	TCATGA	1 cut(s)	2245
PaqCI	CACCTGC	1 cut(s)	2797
PctI	GAATGC	1 cut(s)	1047
PdmI	GAANNNNTTC	3 cut(s)	726, 1099, 2316
PfeI	GAWTC	4 cut(s)	168, 205, 2415, 2659
PflMI	CCANNNNNTGG	2 cut(s)	1160, 2528
PfoI	TCCNGGA	3 cut(s)	937, 1987, 2716
PleI	GAGTC	2 cut(s)	831, 1393
PmaCI	CACGTG	1 cut(s)	2798
PmlI	CACGTG	1 cut(s)	2798
PpsI	GAGTC	2 cut(s)	831, 1393
Ppu21I	YACGTR	1 cut(s)	2798
PpuMI	RGGWCCY	1 cut(s)	837
PshAI	GACNNNNGTC	1 cut(s)	638
PsiI	TTATAA	1 cut(s)	1593
Psp124BI	GAGCTC	1 cut(s)	12
Psp1406I	AACGTT	1 cut(s)	479
Psp5II	RGGWCCY	1 cut(s)	837
Psp6I	CCWGG	8 cut(s)	48, 366, 937, 1444, 1489, 1987, 2281, 2716
PspCI	CACGTG	1 cut(s)	2798
PspEI	GGTNACC	1 cut(s)	1323
PspFI	CCCAGC	3 cut(s)	41, 381, 692
PspGI	CCWGG	8 cut(s)	48, 366, 937, 1444, 1489, 1987, 2281, 2716
PspN4I	GGNNCC	9 cut(s)	387, 839, 1292, 1365, 1539, 1876, 2095, 2215, 2295
PspPI	GGNCC	8 cut(s)	837, 888, 1291, 1673, 1892, 2468, 2599, 2705
PspPPI	RGGWCCY	1 cut(s)	837
PstI	CTGCAG	1 cut(s)	1951
PstNI	CAGNNNCTG	1 cut(s)	454
PsuI	RGATCY	3 cut(s)	274, 779, 2293
RsaI	GTAC	4 cut(s)	243, 1008, 1603, 2434
RsaNI	GTAC	4 cut(s)	242, 1007, 1602, 2433
RseI	CAYNNNNRTG	4 cut(s)	261, 1446, 1767, 2237
SacI	GAGCTC	1 cut(s)	12
Sau96I	GGNCC	8 cut(s)	837, 888, 1291, 1673, 1892, 2468, 2599, 2705
ScaI	AGTACT	1 cut(s)	243
SchI	GAGTC	2 cut(s)	832, 1393
SduI	GDGCHC	3 cut(s)	12, 1062, 1787
SexAI	ACCWGGT	1 cut(s)	48
SfaNI	GCATC	8 cut(s)	520, 679, 887, 1718, 1723, 2058, 2386, 2801
SfcI	CTRYAG	3 cut(s)	832, 1947, 2040
SinI	GGWCC	4 cut(s)	837, 888, 1673, 1892
SmaI	CCCGGG	1 cut(s)	1881
SmiMI	CAYNNNNRTG	4 cut(s)	261, 1446, 1767, 2237
SmlI	CTYRAG	4 cut(s)	961, 1010, 1698, 2079
SmoI	CTYRAG	4 cut(s)	961, 1010, 1698, 2079
SpeI	ACTAGT	1 cut(s)	1823
SphI	GCATGC	4 cut(s)	789, 1411, 1697, 2377
SsiI	CCGC	4 cut(s)	1469, 1541, 2388, 2614
SspI	AATATT	1 cut(s)	1486
SspMI	CTAG	6 cut(s)	920, 1137, 1817, 1824, 2121, 2262
SstI	GAGCTC	1 cut(s)	12
StyI	CCWWGG	4 cut(s)	352, 919, 1582, 1816
TaaI	ACNGT	9 cut(s)	126, 183, 289, 401, 707, 805, 915, 1064, 1859
TaiI	ACGT	2 cut(s)	482, 2800
TaqI	TCGA	3 cut(s)	322, 799, 879
TaqII	GACCGA	1 cut(s)	2647
TatI	WGTACW	3 cut(s)	241, 1006, 2432
TauI	GCSGC	1 cut(s)	1543
TfiI	GAWTC	4 cut(s)	168, 205, 2415, 2659
TscAI	CASTG	5 cut(s)	459, 710, 1576, 2161, 2277
TseFI	GTSAC	3 cut(s)	1323, 1919, 2268
TseI	GCWGC	9 cut(s)	83, 1466, 1518, 1617, 1946, 2143, 2346, 2421, 2674
Tsp45I	GTSAC	3 cut(s)	1323, 1919, 2268
TspDTI	ATGAA	7 cut(s)	264, 1146, 1199, 1700, 2325, 2551, 2681
TspGWI	ACGGA	4 cut(s)	1089, 1756, 1938, 2640
TspMI	CCCGGG	1 cut(s)	1879
TspRI	CASTG	5 cut(s)	459, 710, 1576, 2161, 2277
Van91I	CCANNNNNTGG	2 cut(s)	1160, 2528
Vha464I	CTTAAG	2 cut(s)	961, 1010
VneI	GTGCAC	1 cut(s)	1058
VpaK11BI	GGWCC	4 cut(s)	837, 888, 1673, 1892
XagI	CCTNNNNNAGG	2 cut(s)	683, 1791
XapI	RAATTY	5 cut(s)	660, 950, 1079, 2074, 2581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	359
XmaI	CCCGGG	1 cut(s)	1879
XmaJI	CCTAGG	2 cut(s)	919, 1816
XmnI	GAANNNNTTC	3 cut(s)	726, 1099, 2316
XspI	CTAG	6 cut(s)	920, 1137, 1817, 1824, 2121, 2262
ZrmI	AGTACT	1 cut(s)	243
Zsp2I	ATGCAT	6 cut(s)	791, 902, 1515, 1695, 1711, 2379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.