Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006352

Physical Location & Seq

Genomic Coordinates Reverse (-)

49328273 .. 49332135

Gene Structure 3863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG245100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTTGGTTTCATAAGAATGGTCAAATTAGAACATGTCAAGGGATGCTACGGAATAACTGAAGTGAGCCTGCGCAATCAAAGACTGCATTTGGTTTACAATGGAGTTGAGATTGGTGGCGGAAGTCTGAGAATTTATAAACGTGAGGTGCAGCAAAAGGCTGAAGCGAAGTTTGGCTATCTGCTTGAGGCATTAGATATGGTGCCCCTCCACATGAGAGAATTGAAAAGACCATCAATTGGGAAGGAGTATTTTAATCATATGAACCTTGAAGAAATTGTTACAAACTATCCATATCAGAAGAACTTGCCTAAGGAAGACATGATTAAAGAAAATCAGATACGATTAGCTTTGGTTGATTTTTTGAGGGGCCTTGTTGAGTTTGTTCCTTCAAAACGGTGGTCACCTTTTCAGGCTTCAGAACACCCTTTTGTTACAGGGGAACCTTTTACTTGCCCTTATCAACCTCCATCAGAGCCTCCTCGCATGCTTGTTGCTCAAAACATAAGGGTAGATCATCATCCTGGTGGTGGGCATTGGTTTGCTGCGGGTCTCTCTCCTAATATTCCAGGCAGAAACAGGGTCTCCATGCTTATTAGCAGCCCACATTTTCAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0030587 GO:0031152 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0035556 GO:0036211 GO:0040011 GO:0042221 GO:0042330 GO:0042493 GO:0042594 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045472 GO:0046677 GO:0048518 GO:0048519 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051409 GO:0051703 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0071704 GO:0090702 GO:0097327 GO:0098630 GO:0098743 GO:0099120 GO:0140096 GO:1901564 GO:1901654 GO:1901700 GO:1904643

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

206

Amino Acids

23.67

Weight (kDa)

9.06

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35980 AT5G35980 AT5G35980
fragaria_vesca	FvH4_7g34270 FvH4_7g34270 FvH4_7g34270 FvH4_7g34270
malus_domestica	MD01G1239700.v1.1 MD07G1311600.v1.1
prunus_persica	Prupe.2G329600_v2.0.a1 Prupe.2G329600_v2.0.a1
pyrus_communis	pycom07g28380
rosa_chinensis	RchiOBHm_Chr1g0384621
rosa_laevigata	RLG00000026026
rosa_multiflora	Rmu_co8382885.1_g000001 Rmu_sc0012136.1_g000028
rosa_roxburghii	Rroxscaffold_1G00045450
rosa_rugosa	Rorug01G0450200
rosa_samantha	Rh1AG474700 Rh1BG432800 Rh1CG446000 Rh1DG465400 Rh2AG390000 Rh3CG154800 Rh3DG155900 Rh4CG245100
rosa_wichuraiana	Rw1G039790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	138
Acc16I	TGCGCA	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	202
AccB7I	CCANNNNNTGG	1 cut(s)	239
AciI	CCGC	2 cut(s)	120, 548
AcsI	RAATTY	1 cut(s)	132
AcuI	CTGAAG	3 cut(s)	81, 183, 402
AfiI	CCNNNNNNNGG	2 cut(s)	239, 530
AflIII	ACRYGT	1 cut(s)	34
AgsI	TTSAA	3 cut(s)	226, 272, 393
AjnI	CCWGG	2 cut(s)	523, 568
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
Alw26I	GTCTC	2 cut(s)	557, 589
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	3 cut(s)	151, 545, 600
ApoI	RAATTY	1 cut(s)	132
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	396
AxyI	CCTNAGG	1 cut(s)	312
BaeGI	GKGCMC	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	324
BbvI	GCAGC	3 cut(s)	163, 532, 612
BccI	CCATC	2 cut(s)	241, 478
BciT130I	CCWGG	2 cut(s)	525, 570
BcoDI	GTCTC	2 cut(s)	557, 589
BisI	GCNGC	3 cut(s)	152, 546, 601
BlsI	GCNGC	3 cut(s)	153, 547, 602
Bme1390I	CCNGG	2 cut(s)	525, 570
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	3 cut(s)	204, 371, 444
BmrFI	CCNGG	2 cut(s)	525, 570
BmsI	GCATC	1 cut(s)	35
BpiI	GAAGAC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	519
BsaI	GGTCTC	2 cut(s)	557, 589
BsaXI	ACNNNNNCTCC	2 cut(s)	569, 599
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 530
Bse21I	CCTNAGG	1 cut(s)	312
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	2 cut(s)	525, 570
BseGI	GGATG	2 cut(s)	50, 520
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	2 cut(s)	239, 530
BseMII	CTCAG	1 cut(s)	119
BseRI	GAGGAG	1 cut(s)	471
BseSI	GKGCMC	1 cut(s)	207
BseXI	GCAGC	3 cut(s)	163, 532, 612
BsgI	GTGCAG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	372
BshNI	GGYRCC	1 cut(s)	202
BslI	CCNNNNNNNGG	2 cut(s)	239, 530
BsmAI	GTCTC	2 cut(s)	557, 589
BsnI	GGCC	1 cut(s)	372
Bso31I	GGTCTC	2 cut(s)	557, 589
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	514
BspACI	CCGC	2 cut(s)	120, 548
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	204, 371, 444
BspT107I	GGYRCC	1 cut(s)	202
BspTNI	GGTCTC	2 cut(s)	557, 589
BssMI	GATC	1 cut(s)	514
Bst2UI	CCWGG	2 cut(s)	525, 570
Bst4CI	ACNGT	1 cut(s)	399
BstC8I	GCNNGC	2 cut(s)	71, 488
BstDEI	CTNAG	2 cut(s)	128, 312
BstEII	GGTNACC	1 cut(s)	402
BstF5I	GGATG	2 cut(s)	50, 520
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	1 cut(s)	517
BstMAI	GTCTC	2 cut(s)	557, 589
BstMBI	GATC	1 cut(s)	514
BstNI	CCWGG	2 cut(s)	525, 570
BstNSI	RCATGY	2 cut(s)	38, 490
BstPI	GGTNACC	1 cut(s)	402
BstSCI	CCNGG	2 cut(s)	523, 568
BstSLI	GKGCMC	1 cut(s)	207
BstV1I	GCAGC	3 cut(s)	163, 532, 612
BstV2I	GAAGAC	1 cut(s)	324
Bsu36I	CCTNAGG	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	372
BtsCI	GGATG	2 cut(s)	50, 520
Cac8I	GCNNGC	2 cut(s)	71, 488
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	370
CviAII	CATG	5 cut(s)	35, 214, 322, 487, 589
CviJI	RGCY	8 cut(s)	69, 161, 177, 350, 372, 416, 478, 603
CviKI_1	RGCY	8 cut(s)	69, 161, 177, 350, 372, 416, 478, 603
DdeI	CTNAG	2 cut(s)	128, 312
DpnI	GATC	1 cut(s)	516
DpnII	GATC	1 cut(s)	514
EciI	GGCGGA	1 cut(s)	135
Eco31I	GGTCTC	2 cut(s)	557, 589
Eco57I	CTGAAG	3 cut(s)	81, 183, 402
Eco81I	CCTNAGG	1 cut(s)	312
Eco91I	GGTNACC	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	370
EcoO65I	GGTNACC	1 cut(s)	402
EcoRII	CCWGG	2 cut(s)	523, 568
FaeI	CATG	5 cut(s)	38, 217, 325, 490, 592
FatI	CATG	5 cut(s)	34, 213, 321, 486, 588
FauI	CCCGC	1 cut(s)	541
FauNDI	CATATG	1 cut(s)	261
Fnu4HI	GCNGC	3 cut(s)	152, 546, 601
FokI	GGATG	2 cut(s)	57, 507
Fsp4HI	GCNGC	3 cut(s)	152, 546, 601
FspI	TGCGCA	1 cut(s)	74
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	3 cut(s)	152, 546, 601
HaeIII	GGCC	1 cut(s)	372
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	5 cut(s)	38, 217, 325, 490, 592
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HphI	GGTGA	1 cut(s)	396
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	5 cut(s)	129, 300, 339, 421, 475
Hpy188III	TCNNGA	1 cut(s)	614
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	238, 399
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	2 cut(s)	88, 151
HpyF3I	CTNAG	2 cut(s)	128, 312
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	5 cut(s)	38, 217, 325, 490, 592
HspAI	GCGC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	514
LpnPI	CCDG	9 cut(s)	83, 398, 423, 510, 537, 555, 565, 582, 599
Lsp1109I	GCAGC	3 cut(s)	163, 532, 612
LweI	GCATC	1 cut(s)	35
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	3 cut(s)	280, 402, 433
MalI	GATC	1 cut(s)	516
MboI	GATC	1 cut(s)	514
MboII	GAAGA	3 cut(s)	284, 313, 329
MfeI	CAATTG	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	5 cut(s)	26, 132, 221, 237, 276
MnlI	CCTC	7 cut(s)	139, 181, 218, 360, 477, 489, 492
MseI	TTAA	2 cut(s)	255, 327
MslI	CAYNNNNRTG	2 cut(s)	17, 525
MspR9I	CCNGG	2 cut(s)	525, 570
MunI	CAATTG	1 cut(s)	237
MvaI	CCWGG	2 cut(s)	525, 570
NdeI	CATATG	1 cut(s)	261
NdeII	GATC	1 cut(s)	514
NlaIII	CATG	5 cut(s)	38, 217, 325, 490, 592
NlaIV	GGNNCC	3 cut(s)	204, 371, 444
NmuCI	GTSAC	1 cut(s)	402
NsbI	TGCGCA	1 cut(s)	74
NspI	RCATGY	2 cut(s)	38, 490
PaeI	GCATGC	1 cut(s)	490
PciI	ACATGT	1 cut(s)	34
PflMI	CCANNNNNTGG	1 cut(s)	239
PkrI	GCNGC	3 cut(s)	153, 547, 602
PscI	ACATGT	1 cut(s)	34
PsiI	TTATAA	1 cut(s)	138
Psp6I	CCWGG	2 cut(s)	523, 568
PspEI	GGTNACC	1 cut(s)	402
PspGI	CCWGG	2 cut(s)	523, 568
PspN4I	GGNNCC	3 cut(s)	204, 371, 444
PspPI	GGNCC	1 cut(s)	370
RseI	CAYNNNNRTG	2 cut(s)	17, 525
SaqAI	TTAA	2 cut(s)	255, 327
SatI	GCNGC	3 cut(s)	152, 546, 601
Sau3AI	GATC	1 cut(s)	514
Sau96I	GGNCC	1 cut(s)	370
ScrFI	CCNGG	2 cut(s)	525, 570
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	7 cut(s)	145, 150, 270, 352, 409, 448, 469
SfaNI	GCATC	1 cut(s)	35
SmiMI	CAYNNNNRTG	2 cut(s)	17, 525
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SphI	GCATGC	1 cut(s)	490
Sse9I	AATT	5 cut(s)	26, 132, 221, 237, 276
SsiI	CCGC	2 cut(s)	120, 548
SspI	AATATT	1 cut(s)	565
StyD4I	CCNGG	2 cut(s)	523, 568
TaaI	ACNGT	1 cut(s)	399
TaiI	ACGT	1 cut(s)	145
TasI	AATT	5 cut(s)	26, 132, 221, 237, 276
Tru1I	TTAA	2 cut(s)	255, 327
Tru9I	TTAA	2 cut(s)	255, 327
TseFI	GTSAC	1 cut(s)	402
TseI	GCWGC	3 cut(s)	151, 545, 600
Tsp45I	GTSAC	1 cut(s)	402
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	66
Van91I	CCANNNNNTGG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	132
XceI	RCATGY	2 cut(s)	38, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.