Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8382885.1

Orthogroup ID

OG0006352

Physical Location & Seq

Genomic Coordinates Reverse (-)

214 .. 1083

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8382885.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atgcttgctcctttgcagattccaggcagaaacagggtctccatgcatagcagcccacattttcaggtggtgccgccatatgcacatgctaatagctatggtagtgtaggaagccatggcagttataatgatggtactggacttggaagcagctttggaagctatggagatactggtaatatgtttgcttattattcaccagttggtccatctgggatgaacatgcatgctcaaggcaatgcatcaatgcttggaagtagtcctgatgctagacggaggattatcccatattcacatggaaatggacttggtatgagcccttcagcaggaagttttgctcctctgcccctaggcactagtccttcacaatttactccaccaagttcctacggtcaagtttctgctggctccccgggacattatggtccaacttctccagcaagaggcagttgtcacggatcacctttaggaaagatggctgcagttagtcagttcaatagaagaaaaagttggggatatcctggaggttctcaaactcaggagagttcgtcttcgcattggcaagggcaaactacagatggcatcagttctggcaaagctgaggggaattctcaagtagttggtggttccccatcacatctgcctctaagttctagtgctggaagctggaaacagcagcgaggaggcagtggaagttctgctggctacttagccactccaaacatgccaagctccttcaaggttggttccaatatcccaaagaccacaggagtggctcatgacaattcggaggctagcctgtcactgcctgatcctggggattgggatcccaattataggtataactggacaataccttttaattgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0030587 GO:0031152 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0035556 GO:0036211 GO:0040011 GO:0042221 GO:0042330 GO:0042493 GO:0042594 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045472 GO:0046677 GO:0048518 GO:0048519 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051409 GO:0051703 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0071704 GO:0090702 GO:0097327 GO:0098630 GO:0098743 GO:0099120 GO:0140096 GO:1901564 GO:1901654 GO:1901700 GO:1904643

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

289

Amino Acids

29.85

Weight (kDa)

9.23

Isoelectric Point (pI)

57.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35980 AT5G35980 AT5G35980
fragaria_vesca	FvH4_7g34270 FvH4_7g34270 FvH4_7g34270 FvH4_7g34270
malus_domestica	MD01G1239700.v1.1 MD07G1311600.v1.1
prunus_persica	Prupe.2G329600_v2.0.a1 Prupe.2G329600_v2.0.a1
pyrus_communis	pycom07g28380
rosa_chinensis	RchiOBHm_Chr1g0384621
rosa_laevigata	RLG00000026026
rosa_multiflora	Rmu_co8382885.1_g000001 Rmu_sc0012136.1_g000028
rosa_roxburghii	Rroxscaffold_1G00045450
rosa_rugosa	Rorug01G0450200
rosa_samantha	Rh1AG474700 Rh1BG432800 Rh1CG446000 Rh1DG465400 Rh2AG390000 Rh3CG154800 Rh3DG155900 Rh4CG245100
rosa_wichuraiana	Rw1G039790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	126
AasI	GACNNNNNNGTC	1 cut(s)	423
AccB1I	GGYRCC	1 cut(s)	70
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	4 cut(s)	466, 806, 821, 834
AcsI	RAATTY	1 cut(s)	607
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	4 cut(s)	326, 443, 815, 837
AgsI	TTSAA	2 cut(s)	496, 739
AhlI	ACTAGT	1 cut(s)	356
AjnI	CCWGG	3 cut(s)	22, 520, 814
AjuI	GAANNNNNNNTTGG	2 cut(s)	493, 525
AleI	CACNNNNGTG	1 cut(s)	770
AluBI	AGCT	6 cut(s)	96, 153, 162, 599, 666, 732
AluI	AGCT	6 cut(s)	96, 153, 162, 599, 666, 732
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	4 cut(s)	466, 806, 821, 834
Ama87I	CYCGRG	1 cut(s)	412
ApeKI	GCWGC	4 cut(s)	51, 150, 479, 676
ApoI	RAATTY	1 cut(s)	607
AspA2I	CCTAGG	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	206, 425
AsuC2I	CCSGG	2 cut(s)	413, 414
AsuHPI	GGTGA	2 cut(s)	189, 453
AsuNHI	GCTAGC	1 cut(s)	794
AvaI	CYCGRG	1 cut(s)	412
AvaII	GGWCC	2 cut(s)	206, 425
AvrII	CCTAGG	1 cut(s)	349
BamHI	GGATCC	1 cut(s)	826
BanI	GGYRCC	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	320
BarI	GAAGNNNNNNTAC	2 cut(s)	304, 336
BbsI	GAAGAC	1 cut(s)	543
BbvCI	CCTCAGC	1 cut(s)	600
BbvI	GCAGC	4 cut(s)	63, 162, 466, 688
BccI	CCATC	5 cut(s)	125, 217, 469, 572, 640
BciT130I	CCWGG	3 cut(s)	24, 522, 816
BcnI	CCSGG	2 cut(s)	413, 414
BcoDI	GTCTC	1 cut(s)	43
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	5 cut(s)	270, 350, 357, 654, 795
BfmI	CTRYAG	2 cut(s)	480, 573
BisI	GCNGC	5 cut(s)	52, 74, 151, 480, 677
BlnI	CCTAGG	1 cut(s)	349
BlsI	GCNGC	5 cut(s)	53, 75, 152, 481, 678
Bme1390I	CCNGG	5 cut(s)	24, 413, 414, 522, 816
Bme18I	GGWCC	2 cut(s)	206, 425
BmeT110I	CYCGRG	1 cut(s)	412
BmgT120I	GGNCC	2 cut(s)	206, 425
BmiI	GGNNCC	5 cut(s)	72, 409, 628, 748, 828
BmrFI	CCNGG	5 cut(s)	24, 413, 414, 522, 816
BmsI	GCATC	3 cut(s)	251, 256, 591
BmtI	GCTAGC	1 cut(s)	798
BpiI	GAAGAC	1 cut(s)	543
BpmI	CTGGAG	2 cut(s)	420, 543
Bpu10I	CCTNAGC	1 cut(s)	600
BpuEI	CTTGAG	2 cut(s)	216, 597
BpuMI	CCSGG	2 cut(s)	413, 414
BsaBI	GATNNNNATC	1 cut(s)	825
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	5 cut(s)	115, 349, 411, 412, 815
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 533, 563
Bsc4I	CCNNNNNNNGG	4 cut(s)	326, 443, 815, 837
Bse1I	ACTGG	4 cut(s)	142, 178, 200, 851
Bse3DI	GCAATG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	825
BseBI	CCWGG	3 cut(s)	24, 522, 816
BseDI	CCNNGG	5 cut(s)	115, 349, 411, 412, 815
BseGI	GGATG	1 cut(s)	222
BseJI	GATNNNNATC	1 cut(s)	825
BseLI	CCNNNNNNNGG	4 cut(s)	326, 443, 815, 837
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	2 cut(s)	551, 591
BseNI	ACTGG	4 cut(s)	142, 178, 200, 851
BseRI	GAGGAG	2 cut(s)	330, 696
BseXI	GCAGC	4 cut(s)	63, 162, 466, 688
BshNI	GGYRCC	1 cut(s)	70
BsiHKCI	CYCGRG	1 cut(s)	412
BsiSI	CCGG	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	4 cut(s)	326, 443, 815, 837
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	429
Bso31I	GGTCTC	1 cut(s)	43
BsoBI	CYCGRG	1 cut(s)	412
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	3 cut(s)	458, 811, 826
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	1 cut(s)	74
BspCNI	CTCAG	2 cut(s)	550, 592
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	5 cut(s)	72, 409, 628, 748, 828
BspMAI	CTGCAG	1 cut(s)	484
BspOI	GCTAGC	1 cut(s)	798
BspPI	GGATC	4 cut(s)	466, 806, 821, 834
BspT107I	GGYRCC	1 cut(s)	70
BspTNI	GGTCTC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	244
BsrI	ACTGG	4 cut(s)	142, 178, 200, 851
BssECI	CCNNGG	5 cut(s)	115, 349, 411, 412, 815
BssMI	GATC	3 cut(s)	458, 811, 826
BssT1I	CCWWGG	2 cut(s)	115, 349
Bst2UI	CCWGG	3 cut(s)	24, 522, 816
Bst4CI	ACNGT	1 cut(s)	392
BstC8I	GCNNGC	5 cut(s)	6, 228, 406, 703, 796
BstDEI	CTNAG	4 cut(s)	537, 600, 647, 709
BstDSI	CCRYGG	1 cut(s)	115
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	3 cut(s)	461, 814, 829
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	3 cut(s)	458, 811, 826
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	3 cut(s)	24, 522, 816
BstNSI	RCATGY	4 cut(s)	89, 226, 230, 727
BstSCI	CCNGG	5 cut(s)	22, 411, 412, 520, 814
BstSFI	CTRYAG	2 cut(s)	480, 573
BstV1I	GCAGC	4 cut(s)	63, 162, 466, 688
BstV2I	GAAGAC	1 cut(s)	543
BstX2I	RGATCY	1 cut(s)	826
BstXI	CCANNNNNNTGG	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	826
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	222
BtsI	GCAGTG	2 cut(s)	694, 803
BtsIMutI	CAGTG	2 cut(s)	694, 803
Cac8I	GCNNGC	5 cut(s)	6, 228, 406, 703, 796
CciI	TCATGA	1 cut(s)	778
Cfr13I	GGNCC	2 cut(s)	206, 425
Cfr9I	CCCGGG	1 cut(s)	412
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	8 cut(s)	43, 86, 116, 223, 227, 296, 724, 779
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	4 cut(s)	537, 600, 647, 709
DpnI	GATC	3 cut(s)	460, 813, 828
DpnII	GATC	3 cut(s)	458, 811, 826
DrdI	GACNNNNNNGTC	1 cut(s)	423
DseDI	GACNNNNNNGTC	1 cut(s)	423
Eco130I	CCWWGG	2 cut(s)	115, 349
Eco24I	GRGCYC	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	518
Eco47I	GGWCC	2 cut(s)	206, 425
Eco57I	CTGAAG	1 cut(s)	306
Eco88I	CYCGRG	1 cut(s)	412
EcoNI	CCTNNNNNAGG	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	607
EcoRII	CCWGG	3 cut(s)	22, 520, 814
EcoRV	GATATC	1 cut(s)	518
EcoT14I	CCWWGG	2 cut(s)	115, 349
EcoT22I	ATGCAT	3 cut(s)	48, 228, 244
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	2 cut(s)	115, 349
FaeI	CATG	8 cut(s)	46, 89, 119, 226, 230, 299, 727, 782
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	8 cut(s)	42, 85, 115, 222, 226, 295, 723, 778
FauNDI	CATATG	1 cut(s)	79
Fnu4HI	GCNGC	5 cut(s)	52, 74, 151, 480, 677
FokI	GGATG	1 cut(s)	229
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	5 cut(s)	52, 74, 151, 480, 677
FspBI	CTAG	5 cut(s)	270, 350, 357, 654, 795
GluI	GCNGC	5 cut(s)	52, 74, 151, 480, 677
GsuI	CTGGAG	2 cut(s)	420, 543
HapII	CCGG	1 cut(s)	413
Hin1II	CATG	8 cut(s)	46, 89, 119, 226, 230, 299, 727, 782
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	2 cut(s)	189, 453
Hpy188I	TCNGA	1 cut(s)	790
Hpy188III	TCNNGA	3 cut(s)	263, 539, 779
HpyAV	CCTTC	3 cut(s)	330, 372, 745
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4V	TGCA	6 cut(s)	16, 46, 83, 226, 242, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	4 cut(s)	537, 600, 647, 709
Hsp92II	CATG	8 cut(s)	46, 89, 119, 226, 230, 299, 727, 782
Kzo9I	GATC	3 cut(s)	458, 811, 826
LmnI	GCTCC	4 cut(s)	13, 343, 413, 737
Lsp1109I	GCAGC	4 cut(s)	63, 162, 466, 688
LweI	GCATC	3 cut(s)	251, 256, 591
MaeI	CTAG	5 cut(s)	270, 350, 357, 654, 795
MaeIII	GTNAC	2 cut(s)	452, 801
MalI	GATC	3 cut(s)	460, 813, 828
MboI	GATC	3 cut(s)	458, 811, 826
MboII	GAAGA	2 cut(s)	513, 543
MflI	RGATCY	1 cut(s)	826
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	5 cut(s)	368, 607, 784, 832, 862
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	9 cut(s)	270, 351, 437, 518, 595, 654, 674, 677, 784
Mph1103I	ATGCAT	3 cut(s)	48, 228, 244
MseI	TTAA	1 cut(s)	861
MslI	CAYNNNNRTG	2 cut(s)	300, 770
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	5 cut(s)	24, 413, 414, 522, 816
MvaI	CCWGG	3 cut(s)	24, 522, 816
MwoI	GCNNNNNNNGC	1 cut(s)	159
NciI	CCSGG	2 cut(s)	413, 414
NcoI	CCATGG	1 cut(s)	115
NdeI	CATATG	1 cut(s)	79
NdeII	GATC	3 cut(s)	458, 811, 826
NheI	GCTAGC	1 cut(s)	794
NlaIII	CATG	8 cut(s)	46, 89, 119, 226, 230, 299, 727, 782
NlaIV	GGNNCC	5 cut(s)	72, 409, 628, 748, 828
NmuCI	GTSAC	2 cut(s)	452, 801
NsiI	ATGCAT	3 cut(s)	48, 228, 244
NspI	RCATGY	4 cut(s)	89, 226, 230, 727
OliI	CACNNNNGTG	1 cut(s)	770
PaeI	GCATGC	1 cut(s)	230
PagI	TCATGA	1 cut(s)	778
PfeI	GAWTC	1 cut(s)	19
PfoI	TCCNGGA	1 cut(s)	520
PkrI	GCNGC	5 cut(s)	53, 75, 152, 481, 678
PsiI	TTATAA	1 cut(s)	126
Psp6I	CCWGG	3 cut(s)	22, 520, 814
PspGI	CCWGG	3 cut(s)	22, 520, 814
PspN4I	GGNNCC	5 cut(s)	72, 409, 628, 748, 828
PspPI	GGNCC	2 cut(s)	206, 425
PstI	CTGCAG	1 cut(s)	484
PsuI	RGATCY	1 cut(s)	826
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	2 cut(s)	300, 770
SaqAI	TTAA	1 cut(s)	861
SatI	GCNGC	5 cut(s)	52, 74, 151, 480, 677
Sau3AI	GATC	3 cut(s)	458, 811, 826
Sau96I	GGNCC	2 cut(s)	206, 425
ScrFI	CCNGG	5 cut(s)	24, 413, 414, 522, 816
SduI	GDGCHC	1 cut(s)	320
SfaNI	GCATC	3 cut(s)	251, 256, 591
SfcI	CTRYAG	2 cut(s)	480, 573
SinI	GGWCC	2 cut(s)	206, 425
SmaI	CCCGGG	1 cut(s)	414
SmiMI	CAYNNNNRTG	2 cut(s)	300, 770
SmlI	CTYRAG	2 cut(s)	231, 612
SmoI	CTYRAG	2 cut(s)	231, 612
SpeI	ACTAGT	1 cut(s)	356
SphI	GCATGC	1 cut(s)	230
Sse9I	AATT	5 cut(s)	368, 607, 784, 832, 862
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	5 cut(s)	270, 350, 357, 654, 795
StyD4I	CCNGG	5 cut(s)	22, 411, 412, 520, 814
StyI	CCWWGG	2 cut(s)	115, 349
TaaI	ACNGT	1 cut(s)	392
TasI	AATT	5 cut(s)	368, 607, 784, 832, 862
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	861
Tru9I	TTAA	1 cut(s)	861
TscAI	CASTG	2 cut(s)	694, 810
TseFI	GTSAC	2 cut(s)	452, 801
TseI	GCWGC	4 cut(s)	51, 150, 479, 676
Tsp45I	GTSAC	2 cut(s)	452, 801
TspDTI	ATGAA	1 cut(s)	233
TspGWI	ACGGA	2 cut(s)	289, 471
TspMI	CCCGGG	1 cut(s)	412
TspRI	CASTG	2 cut(s)	694, 810
VpaK11BI	GGWCC	2 cut(s)	206, 425
XagI	CCTNNNNNAGG	1 cut(s)	324
XapI	RAATTY	1 cut(s)	607
XceI	RCATGY	4 cut(s)	89, 226, 230, 727
XmaI	CCCGGG	1 cut(s)	412
XmaJI	CCTAGG	1 cut(s)	349
XspI	CTAG	5 cut(s)	270, 350, 357, 654, 795
Zsp2I	ATGCAT	3 cut(s)	48, 228, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.