Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006352

Physical Location & Seq

Genomic Coordinates Forward (+)

58430749 .. 58445215

Gene Structure 14467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG390000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCTAGAATATTGTCTGATATCCAGTCTTGGACCAGAATCTACTGCATGATAATATGCTCTTTATTACAGGCATCAAAACGCCCTTTTGTTACAGGGGAACCTTTTACTTGCCCTTATCAACCTCCATCAGAGACTCCTTGCATGCTTTGGAAAGATTATGACCTTAATCAACAGTCTAAAAGAGTTCTCGAGCCAGATTCAGATGTCAAATGTATAAGAGGTAATATGAACTACTTCTATCTGATTCAATTGATAATCTGTTTCCACAGTTGTACTTCATCACTTCACTATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0030587 GO:0031152 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0035556 GO:0036211 GO:0040011 GO:0042221 GO:0042330 GO:0042493 GO:0042594 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045472 GO:0046677 GO:0048518 GO:0048519 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051409 GO:0051703 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0071704 GO:0090702 GO:0097327 GO:0098630 GO:0098743 GO:0099120 GO:0140096 GO:1901564 GO:1901654 GO:1901700 GO:1904643

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

99

Amino Acids

11.61

Weight (kDa)

7.55

Isoelectric Point (pI)

74.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35980 AT5G35980 AT5G35980
fragaria_vesca	FvH4_7g34270 FvH4_7g34270 FvH4_7g34270 FvH4_7g34270
malus_domestica	MD01G1239700.v1.1 MD07G1311600.v1.1
prunus_persica	Prupe.2G329600_v2.0.a1 Prupe.2G329600_v2.0.a1
pyrus_communis	pycom07g28380
rosa_chinensis	RchiOBHm_Chr1g0384621
rosa_laevigata	RLG00000026026
rosa_multiflora	Rmu_co8382885.1_g000001 Rmu_sc0012136.1_g000028
rosa_roxburghii	Rroxscaffold_1G00045450
rosa_rugosa	Rorug01G0450200
rosa_samantha	Rh1AG474700 Rh1BG432800 Rh1CG446000 Rh1DG465400 Rh2AG390000 Rh3CG154800 Rh3DG155900 Rh4CG245100
rosa_wichuraiana	Rw1G039790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	277
AgsI	TTSAA	1 cut(s)	251
Alw26I	GTCTC	1 cut(s)	128
Ama87I	CYCGRG	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	33
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	33
BccI	CCATC	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	33
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	25
BseNI	ACTGG	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	25
Bst4CI	ACNGT	2 cut(s)	177, 272
BstC8I	GCNNGC	1 cut(s)	146
BstMAI	GTCTC	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	2 cut(s)	49, 145
CviJI	RGCY	2 cut(s)	5, 196
CviKI_1	RGCY	2 cut(s)	5, 196
CviQI	GTAC	1 cut(s)	276
Eco32I	GATATC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	191
EcoRV	GATATC	1 cut(s)	22
FaeI	CATG	2 cut(s)	52, 148
FaiI	YATR	7 cut(s)	50, 58, 146, 162, 218, 230, 294
FatI	CATG	2 cut(s)	48, 144
FspBI	CTAG	1 cut(s)	6
Hin1II	CATG	2 cut(s)	52, 148
HinfI	GANTC	4 cut(s)	39, 136, 200, 247
Hpy188I	TCNGA	4 cut(s)	19, 133, 205, 246
Hpy188III	TCNNGA	1 cut(s)	191
HpyCH4III	ACNGT	2 cut(s)	177, 272
HpyCH4V	TGCA	2 cut(s)	48, 144
Hsp92II	CATG	2 cut(s)	52, 148
LpnPI	CCDG	5 cut(s)	38, 49, 56, 81, 210
LweI	GCATC	1 cut(s)	83
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	91
MfeI	CAATTG	1 cut(s)	251
MluCI	AATT	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	130
MnlI	CCTC	2 cut(s)	135, 215
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	1 cut(s)	168
MunI	CAATTG	1 cut(s)	251
NlaIII	CATG	2 cut(s)	52, 148
NlaIV	GGNNCC	1 cut(s)	102
NspI	RCATGY	1 cut(s)	148
PaeI	GCATGC	1 cut(s)	148
PaeR7I	CTCGAG	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	3 cut(s)	39, 200, 247
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	33
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	168
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	130
SetI	ASST	4 cut(s)	106, 127, 168, 226
SfaNI	GCATC	1 cut(s)	83
Sfr274I	CTCGAG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	33
SlaI	CTCGAG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SphI	GCATGC	1 cut(s)	148
Sse9I	AATT	1 cut(s)	251
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	177, 272
TaqI	TCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	251
TatI	WGTACW	1 cut(s)	275
TfiI	GAWTC	3 cut(s)	39, 200, 247
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TspDTI	ATGAA	2 cut(s)	245, 270
VpaK11BI	GGWCC	1 cut(s)	33
XceI	RCATGY	1 cut(s)	148
XhoI	CTCGAG	1 cut(s)	191
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.