RchiOBHm_Chr2g0092401

RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016233
Physical Location & Seq
Forward (+)
5921297 .. 5922157
861 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46751

Sequence Viewer

Length: 861 bp
ATGAGACCAGGATCGGGTGATGCTACCCAACCGGCCAAGCCCCGGTGGGCAGATATCGATGAGGAGGACGGACAGGAGGAGTTGGACCTCCTCCTTTTGCCGCCAAAGCAGGTGATTGGCCCCGACGAGAAGGGGATGGAGAAGGTGATTGAATACAAATTCAATGAAAAGGGTCAGAAGGTCAAGATCACCACCACCACCACCACCACCACCAGGACCAAATCTCACCTCATGAGTAAGGCGGCCGTGGAGAGGCGCTCCTGGCCAAAATTTGGTGGTGCCGTCAATGAAGACGCCGGTGCCAATCTGACAGCGGTTTCCAAAGAGGAGATCATGCTTGAACGCCCCAAGGCTCTTGGCGCCAACAAGGCACAAGAACTACCAAAGAGTACTAGTGGTAATGGAGGAGGCAATACTACTCTCAAGGTTTGTAGGACTTGTGGTAAGAAAGGTGACCACTGGACTGCACAGTGCCCATACAAAGATCTTGCCCCGCCGAGTTCCGAAGATATTAGCTCATCCGAGGCAGCCACAACTAGCAAGATTGGTACATACGTTCCTCCGGGTTTGAGAGAAGGAGTGAAGAGGGCTCTGAGGAATGATGAAAATTCAGTTCGGGTGAGCAACCTTTCGGAGGATACCCGGGACCCCGATTTGCATGAACTTTTCAGTCCTTTTGGTGCCATAAGCCGTGCTCATGTTGTTCTTGAGAGAGACACCCAAGTTAGCAGAGGATTTGGTTTTGTTGACTTTCTCAACAAGGAACACGGCCAAAGAGCCATAGACAAACTCAATGGGTATGGTTATGACAATCTCATCCTTCGGGTAGAATGGGCCACGCCCCGGCCCAGGCCCAATTGA

Protein Analysis

286

Amino Acids

31.44

Weight (kDa)

7.69

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF3g PF12353 37 - 163 1.5e-29 Eukaryotic translation initiation factor 3 subunit G
RRM_1 PF00076 205 - 271 1.4e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016233)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g06650
rosa_chinensis RchiOBHm_Chr2g0092401 RchiOBHm_Chr6g0294311
rosa_laevigata RLG00000016307
rosa_multiflora Rmu_co8481273.1_g000001 Rmu_sc0001195.1_g000020
rosa_roxburghii Rroxscaffold_2G00149150
rosa_rugosa Rorug02G0025800
rosa_samantha Rh2AG071800 Rh2BG071800 Rh2CG073200 Rh2DG070300 Rh6CG369900
rosa_wichuraiana Rw2G006080 Rw6G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 100
Acc36I ACCTGC 1 cut(s) 100
AccB1I GGYRCC 4 cut(s) 278, 299, 359, 680
AccB7I CCANNNNNTGG 1 cut(s) 272
AciI CCGC 4 cut(s) 101, 242, 314, 494
AclWI GGATC 1 cut(s) 19
AcoI YGGCCR 4 cut(s) 33, 243, 263, 769
AcsI RAATTY 3 cut(s) 158, 269, 607
AcyI GRCGYC 2 cut(s) 294, 360
AfaI GTAC 2 cut(s) 391, 550
AfiI CCNNNNNNNGG 8 cut(s) 14, 42, 213, 252, 272, 634, 843, 849
AgsI TTSAA 3 cut(s) 152, 163, 341
AhlI ACTAGT 1 cut(s) 392
AjnI CCWGG 4 cut(s) 7, 212, 260, 848
AluBI AGCT 1 cut(s) 516
AluI AGCT 1 cut(s) 516
Alw21I GWGCWC 1 cut(s) 697
Alw26I GTCTC 1 cut(s) 708
AlwI GGATC 1 cut(s) 19
Ama87I CYCGRG 1 cut(s) 642
AoxI GGCC 8 cut(s) 33, 118, 243, 263, 769, 834, 845, 851
ApeKI GCWGC 1 cut(s) 527
ApoI RAATTY 3 cut(s) 158, 269, 607
AspLEI GCGC 2 cut(s) 258, 362
AspS9I GGNCC 7 cut(s) 85, 119, 216, 646, 834, 846, 852
AsuC2I CCSGG 5 cut(s) 43, 564, 643, 644, 844
AsuHPI GGTGA 7 cut(s) 29, 124, 157, 181, 218, 464, 631
AvaI CYCGRG 1 cut(s) 642
AvaII GGWCC 3 cut(s) 85, 216, 646
BaeGI GKGCMC 1 cut(s) 476
BaeI ACNNNNGTAYC 2 cut(s) 540, 573
BalI TGGCCA 1 cut(s) 265
BanI GGYRCC 4 cut(s) 278, 299, 359, 680
BanII GRGCYC 1 cut(s) 592
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 697
BbvI GCAGC 1 cut(s) 539
BccI CCATC 1 cut(s) 130
BceAI ACGGC 4 cut(s) 230, 266, 675, 784
BciT130I CCWGG 4 cut(s) 9, 214, 262, 850
BciVI GTATCC 1 cut(s) 631
BcnI CCSGG 5 cut(s) 43, 564, 643, 644, 844
BcoDI GTCTC 1 cut(s) 708
BcuI ACTAGT 1 cut(s) 392
BfaI CTAG 2 cut(s) 393, 537
BfoI RGCGCY 2 cut(s) 259, 363
BfuAI ACCTGC 1 cut(s) 100
BfuI GTATCC 1 cut(s) 631
BglI GCCNNNNNGGC 1 cut(s) 368
BglII AGATCT 1 cut(s) 484
BisI GCNGC 3 cut(s) 101, 243, 528
BlsI GCNGC 3 cut(s) 102, 244, 529
BmcAI AGTACT 1 cut(s) 391
Bme1390I CCNGG 9 cut(s) 9, 43, 214, 262, 564, 643, 644, 844, 850
Bme18I GGWCC 3 cut(s) 85, 216, 646
BmeT110I CYCGRG 1 cut(s) 642
BmgT120I GGNCC 7 cut(s) 85, 119, 216, 646, 834, 846, 852
BmiI GGNNCC 7 cut(s) 121, 280, 301, 361, 647, 648, 682
BmrFI CCNGG 9 cut(s) 9, 43, 214, 262, 564, 643, 644, 844, 850
BmsI GCATC 1 cut(s) 10
BpiI GAAGAC 1 cut(s) 297
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BpuEI CTTGAG 2 cut(s) 407, 728
BpuMI CCSGG 5 cut(s) 43, 564, 643, 644, 844
Bsa29I ATCGAT 1 cut(s) 57
BsaHI GRCGYC 2 cut(s) 294, 360
BsaJI CCNNGG 7 cut(s) 41, 246, 348, 522, 642, 842, 848
Bsc4I CCNNNNNNNGG 8 cut(s) 14, 42, 213, 252, 272, 634, 843, 849
Bse118I RCCGGY 2 cut(s) 31, 296
Bse1I ACTGG 1 cut(s) 464
BseBI CCWGG 4 cut(s) 9, 214, 262, 850
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 7 cut(s) 41, 246, 348, 522, 642, 842, 848
BseGI GGATG 3 cut(s) 141, 518, 816
BseLI CCNNNNNNNGG 8 cut(s) 14, 42, 213, 252, 272, 634, 843, 849
BseMII CTCAG 1 cut(s) 584
BseNI ACTGG 1 cut(s) 464
BseRI GAGGAG 5 cut(s) 77, 80, 92, 341, 420
BseSI GKGCMC 1 cut(s) 476
BseX3I CGGCCG 1 cut(s) 243
BseXI GCAGC 1 cut(s) 539
BsgI GTGCAG 1 cut(s) 450
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 8 cut(s) 35, 120, 245, 265, 771, 836, 847, 853
BshNI GGYRCC 4 cut(s) 278, 299, 359, 680
BshVI ATCGAT 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 697
BsiHKCI CYCGRG 1 cut(s) 642
BsiSI CCGG 6 cut(s) 32, 43, 297, 563, 643, 844
BslFI GGGAC 1 cut(s) 659
BslI CCNNNNNNNGG 8 cut(s) 14, 42, 213, 252, 272, 634, 843, 849
BsmAI GTCTC 1 cut(s) 708
BsmFI GGGAC 1 cut(s) 659
BsnI GGCC 8 cut(s) 35, 120, 245, 265, 771, 836, 847, 853
BsoBI CYCGRG 1 cut(s) 642
Bsp1286I GDGCHC 3 cut(s) 476, 592, 697
Bsp143I GATC 4 cut(s) 11, 186, 330, 484
BspACI CCGC 4 cut(s) 101, 242, 314, 494
BspANI GGCC 8 cut(s) 35, 120, 245, 265, 771, 836, 847, 853
BspCNI CTCAG 1 cut(s) 585
BspDI ATCGAT 1 cut(s) 57
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 7 cut(s) 121, 280, 301, 361, 647, 648, 682
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 1 cut(s) 19
BspT107I GGYRCC 4 cut(s) 278, 299, 359, 680
BsrFI RCCGGY 2 cut(s) 31, 296
BsrI ACTGG 1 cut(s) 464
BssAI RCCGGY 2 cut(s) 31, 296
BssECI CCNNGG 7 cut(s) 41, 246, 348, 522, 642, 842, 848
BssMI GATC 4 cut(s) 11, 186, 330, 484
BssNI GRCGYC 2 cut(s) 294, 360
BssT1I CCWWGG 1 cut(s) 348
Bst2UI CCWGG 4 cut(s) 9, 214, 262, 850
Bst4CI ACNGT 1 cut(s) 471
Bst6I CTCTTC 1 cut(s) 578
BstACI GRCGYC 2 cut(s) 294, 360
BstDEI CTNAG 1 cut(s) 593
BstDSI CCRYGG 1 cut(s) 246
BstEII GGTNACC 1 cut(s) 452
BstENI CCTNNNNNAGG 1 cut(s) 632
BstF5I GGATG 3 cut(s) 141, 518, 816
BstH2I RGCGCY 2 cut(s) 259, 363
BstHHI GCGC 2 cut(s) 258, 362
BstKTI GATC 4 cut(s) 14, 189, 333, 487
BstMAI GTCTC 1 cut(s) 708
BstMBI GATC 4 cut(s) 11, 186, 330, 484
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 4 cut(s) 106, 262, 359, 368
BstNI CCWGG 4 cut(s) 9, 214, 262, 850
BstPI GGTNACC 1 cut(s) 452
BstSCI CCNGG 9 cut(s) 7, 41, 212, 260, 562, 641, 642, 842, 848
BstSLI GKGCMC 1 cut(s) 476
BstV1I GCAGC 1 cut(s) 539
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BstZI CGGCCG 1 cut(s) 243
Bsu15I ATCGAT 1 cut(s) 57
BsuI GTATCC 1 cut(s) 631
BsuRI GGCC 8 cut(s) 35, 120, 245, 265, 771, 836, 847, 853
BsuTUI ATCGAT 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 3 cut(s) 141, 518, 816
BtsIMutI CAGTG 2 cut(s) 457, 476
BveI ACCTGC 1 cut(s) 100
CciI TCATGA 1 cut(s) 231
CfoI GCGC 2 cut(s) 258, 362
Cfr10I RCCGGY 2 cut(s) 31, 296
Cfr13I GGNCC 7 cut(s) 85, 119, 216, 646, 834, 846, 852
Cfr9I CCCGGG 1 cut(s) 642
ClaI ATCGAT 1 cut(s) 57
CseI GACGC 1 cut(s) 302
Csp6I GTAC 2 cut(s) 390, 549
CviAII CATG 4 cut(s) 232, 334, 659, 698
CviQI GTAC 2 cut(s) 390, 549
DdeI CTNAG 1 cut(s) 593
DinI GGCGCC 1 cut(s) 361
DpnI GATC 4 cut(s) 13, 188, 332, 486
DpnII GATC 4 cut(s) 11, 186, 330, 484
EaeI YGGCCR 4 cut(s) 33, 243, 263, 769
EagI CGGCCG 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 578
EclXI CGGCCG 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 348
Eco24I GRGCYC 1 cut(s) 592
Eco32I GATATC 1 cut(s) 55
Eco47I GGWCC 3 cut(s) 85, 216, 646
Eco52I CGGCCG 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 642
Eco91I GGTNACC 1 cut(s) 452
EcoNI CCTNNNNNAGG 1 cut(s) 632
EcoO109I RGGNCCY 1 cut(s) 646
EcoO65I GGTNACC 1 cut(s) 452
EcoRII CCWGG 4 cut(s) 7, 212, 260, 848
EcoRV GATATC 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 592
EgeI GGCGCC 1 cut(s) 361
EheI GGCGCC 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 4 cut(s) 235, 337, 662, 701
FaqI GGGAC 1 cut(s) 659
FatI CATG 4 cut(s) 231, 333, 658, 697
FauI CCCGC 1 cut(s) 501
Fnu4HI GCNGC 3 cut(s) 101, 243, 528
FokI GGATG 3 cut(s) 148, 505, 803
FriOI GRGCYC 1 cut(s) 592
Fsp4HI GCNGC 3 cut(s) 101, 243, 528
FspBI CTAG 2 cut(s) 393, 537
GlaI GCGC 2 cut(s) 257, 361
GluI GCNGC 3 cut(s) 101, 243, 528
HaeII RGCGCY 2 cut(s) 259, 363
HaeIII GGCC 8 cut(s) 35, 120, 245, 265, 771, 836, 847, 853
HapII CCGG 6 cut(s) 32, 43, 297, 563, 643, 844
HgaI GACGC 1 cut(s) 302
HhaI GCGC 2 cut(s) 258, 362
Hin1I GRCGYC 2 cut(s) 294, 360
Hin1II CATG 4 cut(s) 235, 337, 662, 701
Hin6I GCGC 2 cut(s) 256, 360
HinP1I GCGC 2 cut(s) 256, 360
HincII GTYRAC 1 cut(s) 748
HindII GTYRAC 1 cut(s) 748
HpaII CCGG 6 cut(s) 32, 43, 297, 563, 643, 844
HphI GGTGA 7 cut(s) 29, 124, 157, 181, 218, 464, 631
Hpy166II GTNNAC 1 cut(s) 748
Hpy188I TCNGA 6 cut(s) 177, 309, 505, 523, 594, 634
Hpy188III TCNNGA 3 cut(s) 184, 232, 707
Hpy8I GTNNAC 1 cut(s) 748
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 5 cut(s) 124, 136, 172, 569, 830
HpyCH4III ACNGT 1 cut(s) 471
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 2 cut(s) 467, 658
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 262, 359, 368
HpyF3I CTNAG 1 cut(s) 593
HpySE526I ACGT 1 cut(s) 555
Hsp92I GRCGYC 2 cut(s) 294, 360
Hsp92II CATG 4 cut(s) 235, 337, 662, 701
HspAI GCGC 2 cut(s) 256, 360
KasI GGCGCC 1 cut(s) 359
KflI GGGWCCC 1 cut(s) 646
Kzo9I GATC 4 cut(s) 11, 186, 330, 484
LmnI GCTCC 1 cut(s) 263
Lsp1109I GCAGC 1 cut(s) 539
LweI GCATC 1 cut(s) 10
MaeI CTAG 2 cut(s) 393, 537
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 1 cut(s) 452
MalI GATC 4 cut(s) 13, 188, 332, 486
MboI GATC 4 cut(s) 11, 186, 330, 484
MboII GAAGA 3 cut(s) 302, 518, 595
MfeI CAATTG 1 cut(s) 856
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 3 cut(s) 476, 592, 697
MlsI TGGCCA 1 cut(s) 265
MluCI AATT 4 cut(s) 158, 269, 607, 856
MluNI TGGCCA 1 cut(s) 265
Mly113I GGCGCC 1 cut(s) 360
MmeI TCCRAC 1 cut(s) 63
Mox20I TGGCCA 1 cut(s) 265
MscI TGGCCA 1 cut(s) 265
Msp20I TGGCCA 1 cut(s) 265
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 6 cut(s) 32, 43, 297, 563, 643, 844
MspR9I CCNGG 9 cut(s) 9, 43, 214, 262, 564, 643, 644, 844, 850
MunI CAATTG 1 cut(s) 856
MvaI CCWGG 4 cut(s) 9, 214, 262, 850
MwoI GCNNNNNNNGC 4 cut(s) 106, 262, 359, 368
NarI GGCGCC 1 cut(s) 360
NciI CCSGG 5 cut(s) 43, 564, 643, 644, 844
NdeII GATC 4 cut(s) 11, 186, 330, 484
NlaIII CATG 4 cut(s) 235, 337, 662, 701
NlaIV GGNNCC 7 cut(s) 121, 280, 301, 361, 647, 648, 682
NmeAIII GCCGAG 1 cut(s) 522
NmuCI GTSAC 1 cut(s) 452
PagI TCATGA 1 cut(s) 231
PaqCI CACCTGC 1 cut(s) 100
PflMI CCANNNNNTGG 1 cut(s) 272
PkrI GCNGC 3 cut(s) 102, 244, 529
PluTI GGCGCC 1 cut(s) 363
PpuMI RGGWCCY 1 cut(s) 646
Psp5II RGGWCCY 1 cut(s) 646
Psp6I CCWGG 4 cut(s) 7, 212, 260, 848
PspEI GGTNACC 1 cut(s) 452
PspGI CCWGG 4 cut(s) 7, 212, 260, 848
PspN4I GGNNCC 7 cut(s) 121, 280, 301, 361, 647, 648, 682
PspPI GGNCC 7 cut(s) 85, 119, 216, 646, 834, 846, 852
PspPPI RGGWCCY 1 cut(s) 646
PsuI RGATCY 1 cut(s) 484
RsaI GTAC 2 cut(s) 391, 550
RsaNI GTAC 2 cut(s) 390, 549
SatI GCNGC 3 cut(s) 101, 243, 528
Sau3AI GATC 4 cut(s) 11, 186, 330, 484
Sau96I GGNCC 7 cut(s) 85, 119, 216, 646, 834, 846, 852
ScaI AGTACT 1 cut(s) 391
ScrFI CCNGG 9 cut(s) 9, 43, 214, 262, 564, 643, 644, 844, 850
SduI GDGCHC 3 cut(s) 476, 592, 697
SfaNI GCATC 1 cut(s) 10
SfoI GGCGCC 1 cut(s) 361
SgrAI CRCCGGYG 1 cut(s) 296
SinI GGWCC 3 cut(s) 85, 216, 646
SmaI CCCGGG 1 cut(s) 644
SmlI CTYRAG 2 cut(s) 422, 707
SmoI CTYRAG 2 cut(s) 422, 707
SpeI ACTAGT 1 cut(s) 392
Sse9I AATT 4 cut(s) 158, 269, 607, 856
SsiI CCGC 4 cut(s) 101, 242, 314, 494
SspDI GGCGCC 1 cut(s) 359
SspMI CTAG 2 cut(s) 393, 537
StyD4I CCNGG 9 cut(s) 7, 41, 212, 260, 562, 641, 642, 842, 848
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 471
TaiI ACGT 1 cut(s) 558
TaqI TCGA 1 cut(s) 57
TasI AATT 4 cut(s) 158, 269, 607, 856
TatI WGTACW 1 cut(s) 389
TauI GCSGC 2 cut(s) 103, 245
TscAI CASTG 2 cut(s) 464, 476
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 1 cut(s) 527
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 4 cut(s) 180, 303, 618, 675
TspGWI ACGGA 1 cut(s) 84
TspMI CCCGGG 1 cut(s) 642
TspRI CASTG 2 cut(s) 464, 476
Van91I CCANNNNNTGG 1 cut(s) 272
VpaK11BI GGWCC 3 cut(s) 85, 216, 646
XagI CCTNNNNNAGG 1 cut(s) 632
XapI RAATTY 3 cut(s) 158, 269, 607
XmaI CCCGGG 1 cut(s) 642
XspI CTAG 2 cut(s) 393, 537
ZrmI AGTACT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.