Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0016233

Physical Location & Seq

Genomic Coordinates Forward (+)

6007198 .. 6008361

Gene Structure 1164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG071800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAGAAGGTGATTGAATACAAATTCAATGAAAAGGGTCAGAAGGTCAAGATCACCACCACTACCAGGAACAAATCTCACCTCATGAGTAAGGCGGCTGTGGAGCGGCGCTCCTGGCCAAAATTTGGTTGTGCCGTCAATGAAGACGCCGGTGCCAACCTAACAGCGGTTTCCAAAGAGGAGATCATGCTCGAACGCCCCAAGGCTCTTGGCGCCAACAAGGCACAAGAACTACCAAAGAGTACTAGTGGTAATGGAGGAGGCAATACTACTCTCAAGGTTTGTAGGACTTGTGGTAAGAAAGGTGACCACTGGACTGCACAGTGCCCATACAAAGATCTTGCCCAGCCGAGTTCCGAAGATATTAGTTCATCCGAGGCAGCCACAACTAGCAAGATTGGTACATACGTTCCTCCGGGTTTGAGAGAAGGAGTTAAGAGGGCTCTGAGGAATGATGAAAATTCAGTTCGGGTGAGCAACCTTTCGGAGGATACCCGGGACCCCGATTTGCATGAACTTTTCAGTCCTTTTGGTGCCATAAGCCGTGCTCATGTTGTTCTTGAGAGAGACACCCAAGTTAGCAGAGGATTTGGTTTTGTTGACTTTCTCAACAAGGAACACGGCCAAAGAGCCATAGACAAACTCAATGGGTATGGTTATGACAATCTCATCCTTCGGGTAGAATGGGCCACGCCCCGGCCCAGGCCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

RRM_1 eIF3g

Protein Analysis

237

Amino Acids

26.23

Weight (kDa)

9.21

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF3g	PF12353	2 - 114	4.8e-28	Eukaryotic translation initiation factor 3 subunit G
RRM_1	PF00076	156 - 222	1e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016233)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06650
rosa_chinensis	RchiOBHm_Chr2g0092401 RchiOBHm_Chr6g0294311
rosa_laevigata	RLG00000016307
rosa_multiflora	Rmu_co8481273.1_g000001 Rmu_sc0001195.1_g000020
rosa_roxburghii	Rroxscaffold_2G00149150
rosa_rugosa	Rorug02G0025800
rosa_samantha	Rh2AG071800 Rh2BG071800 Rh2CG073200 Rh2DG070300 Rh6CG369900
rosa_wichuraiana	Rw2G006080 Rw6G031010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	152, 212, 533
AccB7I	CCANNNNNTGG	1 cut(s)	125
AccBSI	CCGCTC	1 cut(s)	106
AciI	CCGC	3 cut(s)	95, 106, 167
AcoI	YGGCCR	2 cut(s)	116, 622
AcsI	RAATTY	3 cut(s)	23, 122, 460
AcyI	GRCGYC	2 cut(s)	147, 213
AfaI	GTAC	2 cut(s)	244, 403
AfiI	CCNNNNNNNGG	6 cut(s)	66, 125, 166, 487, 696, 702
AgsI	TTSAA	2 cut(s)	17, 28
AhlI	ACTAGT	1 cut(s)	245
AjnI	CCWGG	3 cut(s)	65, 113, 701
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	1 cut(s)	561
Ama87I	CYCGRG	1 cut(s)	495
AoxI	GGCC	5 cut(s)	116, 622, 687, 698, 704
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	3 cut(s)	23, 122, 460
AspLEI	GCGC	2 cut(s)	111, 215
AspS9I	GGNCC	4 cut(s)	499, 687, 699, 705
AsuC2I	CCSGG	4 cut(s)	417, 496, 497, 697
AsuHPI	GGTGA	5 cut(s)	22, 46, 71, 317, 484
AvaI	CYCGRG	1 cut(s)	495
AvaII	GGWCC	1 cut(s)	499
BaeGI	GKGCMC	1 cut(s)	329
BaeI	ACNNNNGTAYC	2 cut(s)	393, 426
BalI	TGGCCA	1 cut(s)	118
BanI	GGYRCC	3 cut(s)	152, 212, 533
BanII	GRGCYC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	550
BbvI	GCAGC	1 cut(s)	392
BceAI	ACGGC	3 cut(s)	119, 528, 637
BciT130I	CCWGG	3 cut(s)	67, 115, 703
BciVI	GTATCC	1 cut(s)	484
BcnI	CCSGG	4 cut(s)	417, 496, 497, 697
BcoDI	GTCTC	1 cut(s)	561
BcuI	ACTAGT	1 cut(s)	245
BfaI	CTAG	2 cut(s)	246, 390
BfoI	RGCGCY	2 cut(s)	112, 216
BfuI	GTATCC	1 cut(s)	484
BglI	GCCNNNNNGGC	1 cut(s)	221
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	3 cut(s)	96, 107, 381
BlsI	GCNGC	3 cut(s)	97, 108, 382
BmcAI	AGTACT	1 cut(s)	244
Bme1390I	CCNGG	7 cut(s)	67, 115, 417, 496, 497, 697, 703
Bme18I	GGWCC	1 cut(s)	499
BmeT110I	CYCGRG	1 cut(s)	495
BmgT120I	GGNCC	4 cut(s)	499, 687, 699, 705
BmiI	GGNNCC	5 cut(s)	154, 214, 500, 501, 535
BmrFI	CCNGG	7 cut(s)	67, 115, 417, 496, 497, 697, 703
BpiI	GAAGAC	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	95, 127
BpuEI	CTTGAG	2 cut(s)	260, 581
BpuMI	CCSGG	4 cut(s)	417, 496, 497, 697
BsaHI	GRCGYC	2 cut(s)	147, 213
BsaJI	CCNNGG	5 cut(s)	201, 375, 495, 695, 701
Bsc4I	CCNNNNNNNGG	6 cut(s)	66, 125, 166, 487, 696, 702
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	317
BseBI	CCWGG	3 cut(s)	67, 115, 703
BseDI	CCNNGG	5 cut(s)	201, 375, 495, 695, 701
BseGI	GGATG	2 cut(s)	371, 669
BseLI	CCNNNNNNNGG	6 cut(s)	66, 125, 166, 487, 696, 702
BseMII	CTCAG	1 cut(s)	437
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	2 cut(s)	194, 273
BseSI	GKGCMC	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	392
BseYI	CCCAGC	1 cut(s)	345
BsgI	GTGCAG	1 cut(s)	303
BshFI	GGCC	5 cut(s)	118, 624, 689, 700, 706
BshNI	GGYRCC	3 cut(s)	152, 212, 533
BsiHKAI	GWGCWC	1 cut(s)	550
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	4 cut(s)	150, 416, 496, 697
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	6 cut(s)	66, 125, 166, 487, 696, 702
BsmAI	GTCTC	1 cut(s)	561
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	5 cut(s)	118, 624, 689, 700, 706
BsoBI	CYCGRG	1 cut(s)	495
Bsp1286I	GDGCHC	3 cut(s)	329, 445, 550
Bsp143I	GATC	3 cut(s)	51, 183, 337
BspACI	CCGC	3 cut(s)	95, 106, 167
BspANI	GGCC	5 cut(s)	118, 624, 689, 700, 706
BspCNI	CTCAG	1 cut(s)	438
BspHI	TCATGA	1 cut(s)	84
BspLI	GGNNCC	5 cut(s)	154, 214, 500, 501, 535
BspT107I	GGYRCC	3 cut(s)	152, 212, 533
BsrBI	CCGCTC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	317
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	5 cut(s)	201, 375, 495, 695, 701
BssMI	GATC	3 cut(s)	51, 183, 337
BssNI	GRCGYC	2 cut(s)	147, 213
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	3 cut(s)	67, 115, 703
Bst4CI	ACNGT	1 cut(s)	324
BstACI	GRCGYC	2 cut(s)	147, 213
BstDEI	CTNAG	1 cut(s)	446
BstEII	GGTNACC	1 cut(s)	305
BstENI	CCTNNNNNAGG	1 cut(s)	485
BstF5I	GGATG	2 cut(s)	371, 669
BstH2I	RGCGCY	2 cut(s)	112, 216
BstHHI	GCGC	2 cut(s)	111, 215
BstKTI	GATC	3 cut(s)	54, 186, 340
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	3 cut(s)	51, 183, 337
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 212, 221
BstNI	CCWGG	3 cut(s)	67, 115, 703
BstPI	GGTNACC	1 cut(s)	305
BstSCI	CCNGG	7 cut(s)	65, 113, 415, 494, 495, 695, 701
BstSLI	GKGCMC	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	392
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuI	GTATCC	1 cut(s)	484
BsuRI	GGCC	5 cut(s)	118, 624, 689, 700, 706
BtsCI	GGATG	2 cut(s)	371, 669
BtsIMutI	CAGTG	2 cut(s)	310, 329
CciI	TCATGA	1 cut(s)	84
CfoI	GCGC	2 cut(s)	111, 215
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	4 cut(s)	499, 687, 699, 705
Cfr9I	CCCGGG	1 cut(s)	495
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	243, 402
CviAII	CATG	4 cut(s)	85, 187, 512, 551
CviQI	GTAC	2 cut(s)	243, 402
DdeI	CTNAG	1 cut(s)	446
DinI	GGCGCC	1 cut(s)	214
DpnI	GATC	3 cut(s)	53, 185, 339
DpnII	GATC	3 cut(s)	51, 183, 337
EaeI	YGGCCR	2 cut(s)	116, 622
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	499
Eco88I	CYCGRG	1 cut(s)	495
Eco91I	GGTNACC	1 cut(s)	305
EcoNI	CCTNNNNNAGG	1 cut(s)	485
EcoO109I	RGGNCCY	1 cut(s)	499
EcoO65I	GGTNACC	1 cut(s)	305
EcoRII	CCWGG	3 cut(s)	65, 113, 701
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	445
EgeI	GGCGCC	1 cut(s)	214
EheI	GGCGCC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	4 cut(s)	88, 190, 515, 554
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	4 cut(s)	84, 186, 511, 550
Fnu4HI	GCNGC	3 cut(s)	96, 107, 381
FokI	GGATG	2 cut(s)	358, 656
FriOI	GRGCYC	1 cut(s)	445
Fsp4HI	GCNGC	3 cut(s)	96, 107, 381
FspBI	CTAG	2 cut(s)	246, 390
GlaI	GCGC	2 cut(s)	110, 214
GluI	GCNGC	3 cut(s)	96, 107, 381
GsaI	CCCAGC	1 cut(s)	349
HaeII	RGCGCY	2 cut(s)	112, 216
HaeIII	GGCC	5 cut(s)	118, 624, 689, 700, 706
HapII	CCGG	4 cut(s)	150, 416, 496, 697
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	2 cut(s)	111, 215
Hin1I	GRCGYC	2 cut(s)	147, 213
Hin1II	CATG	4 cut(s)	88, 190, 515, 554
Hin6I	GCGC	2 cut(s)	109, 213
HinP1I	GCGC	2 cut(s)	109, 213
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HpaII	CCGG	4 cut(s)	150, 416, 496, 697
HphI	GGTGA	5 cut(s)	22, 46, 71, 317, 484
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188I	TCNGA	5 cut(s)	42, 358, 376, 447, 487
Hpy188III	TCNNGA	3 cut(s)	49, 85, 560
Hpy8I	GTNNAC	1 cut(s)	601
HpyAV	CCTTC	3 cut(s)	37, 422, 683
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	2 cut(s)	320, 511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 212, 221
HpyF3I	CTNAG	1 cut(s)	446
HpySE526I	ACGT	1 cut(s)	408
Hsp92I	GRCGYC	2 cut(s)	147, 213
Hsp92II	CATG	4 cut(s)	88, 190, 515, 554
HspAI	GCGC	2 cut(s)	109, 213
KasI	GGCGCC	1 cut(s)	212
KflI	GGGWCCC	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	51, 183, 337
LmnI	GCTCC	2 cut(s)	103, 116
Lsp1109I	GCAGC	1 cut(s)	392
MaeI	CTAG	2 cut(s)	246, 390
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	3 cut(s)	53, 185, 339
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	3 cut(s)	51, 183, 337
MboII	GAAGA	2 cut(s)	155, 371
MfeI	CAATTG	1 cut(s)	709
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	3 cut(s)	329, 445, 550
MlsI	TGGCCA	1 cut(s)	118
MluCI	AATT	4 cut(s)	23, 122, 460, 709
MluNI	TGGCCA	1 cut(s)	118
Mly113I	GGCGCC	1 cut(s)	213
Mox20I	TGGCCA	1 cut(s)	118
MscI	TGGCCA	1 cut(s)	118
MseI	TTAA	1 cut(s)	435
Msp20I	TGGCCA	1 cut(s)	118
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	4 cut(s)	150, 416, 496, 697
MspR9I	CCNGG	7 cut(s)	67, 115, 417, 496, 497, 697, 703
MunI	CAATTG	1 cut(s)	709
MvaI	CCWGG	3 cut(s)	67, 115, 703
MwoI	GCNNNNNNNGC	3 cut(s)	115, 212, 221
NarI	GGCGCC	1 cut(s)	213
NciI	CCSGG	4 cut(s)	417, 496, 497, 697
NdeII	GATC	3 cut(s)	51, 183, 337
NlaIII	CATG	4 cut(s)	88, 190, 515, 554
NlaIV	GGNNCC	5 cut(s)	154, 214, 500, 501, 535
NmeAIII	GCCGAG	1 cut(s)	375
NmuCI	GTSAC	1 cut(s)	305
PagI	TCATGA	1 cut(s)	84
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	3 cut(s)	97, 108, 382
PluTI	GGCGCC	1 cut(s)	216
PpuMI	RGGWCCY	1 cut(s)	499
Psp5II	RGGWCCY	1 cut(s)	499
Psp6I	CCWGG	3 cut(s)	65, 113, 701
PspEI	GGTNACC	1 cut(s)	305
PspFI	CCCAGC	1 cut(s)	345
PspGI	CCWGG	3 cut(s)	65, 113, 701
PspN4I	GGNNCC	5 cut(s)	154, 214, 500, 501, 535
PspPI	GGNCC	4 cut(s)	499, 687, 699, 705
PspPPI	RGGWCCY	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	2 cut(s)	244, 403
RsaNI	GTAC	2 cut(s)	243, 402
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	3 cut(s)	96, 107, 381
Sau3AI	GATC	3 cut(s)	51, 183, 337
Sau96I	GGNCC	4 cut(s)	499, 687, 699, 705
ScaI	AGTACT	1 cut(s)	244
ScrFI	CCNGG	7 cut(s)	67, 115, 417, 496, 497, 697, 703
SduI	GDGCHC	3 cut(s)	329, 445, 550
SetI	ASST	8 cut(s)	12, 48, 84, 162, 282, 307, 411, 483
SfoI	GGCGCC	1 cut(s)	214
SgrAI	CRCCGGYG	1 cut(s)	149
SinI	GGWCC	1 cut(s)	499
SmaI	CCCGGG	1 cut(s)	497
SmlI	CTYRAG	2 cut(s)	275, 560
SmoI	CTYRAG	2 cut(s)	275, 560
SpeI	ACTAGT	1 cut(s)	245
Sse9I	AATT	4 cut(s)	23, 122, 460, 709
SsiI	CCGC	3 cut(s)	95, 106, 167
SspDI	GGCGCC	1 cut(s)	212
SspMI	CTAG	2 cut(s)	246, 390
StyD4I	CCNGG	7 cut(s)	65, 113, 415, 494, 495, 695, 701
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	324
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	192
TasI	AATT	4 cut(s)	23, 122, 460, 709
TatI	WGTACW	1 cut(s)	242
TauI	GCSGC	2 cut(s)	98, 109
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	2 cut(s)	317, 329
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	5 cut(s)	45, 156, 360, 471, 528
TspMI	CCCGGG	1 cut(s)	495
TspRI	CASTG	2 cut(s)	317, 329
Van91I	CCANNNNNTGG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	499
XagI	CCTNNNNNAGG	1 cut(s)	485
XapI	RAATTY	3 cut(s)	23, 122, 460
XmaI	CCCGGG	1 cut(s)	495
XspI	CTAG	2 cut(s)	246, 390
ZrmI	AGTACT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.