RchiOBHm_Chr6g0294311

RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016233
Physical Location & Seq
Forward (+)
56686087 .. 56686707
621 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26413

Sequence Viewer

Length: 621 bp
ATGAGTAAGGCGGCCGTGGAGCGGCGTGCCTGGCCAAAATTTGGTGGTGCCGTCAATGAAGTCGCTGGTGCCAATCTGACAGCAGTTTCCAAAGAGGAGATCATGCTCAAACGCCCCAAGGCTCTTGGCACCAACAAGGCACAAGAACTACCAAAGAGTACTAGTGGTAATGGAGGAGGCAATACTACTCTCAAGGTTTGTAGGACTTGTGGTAAGAAAGGTGACCACTGGACTGCACAGTGCCCATACAAAGATCTTGCCCCGCAGAGTCGTTCCGGAGATATTAGCTCATCCGAGGCAGCCACAACTAGCAAGACTGGTACATACGTTCCTCCGGGTTTGAGAGAAGGAGTGAATAGGGCTCTGAGGAATGATGAGAATTCAGTTCGGGTGAGCAACCTTTCGGAGGATACCCGGGACCCCGATTTGCATGAACTTTTCAGTCCTTTTGGTGACATAAGCCGTGCTCATGTTGTTCTTGAGAGAGACACCCAAGTTAGCAGAGGATTTGGTTTTGTTAACTTTCTCAGCAAGGAACACGGCCAAAAAGCCATAGACAAATTCAATGGGTATGGTTATGACAATCTCATCCTCCGGGTAGAATGGGCCACGCCTAATTGA

Protein Analysis

206

Amino Acids

22.42

Weight (kDa)

9.13

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF3g PF12353 2 - 86 6.4e-18 Eukaryotic translation initiation factor 3 subunit G
RRM_1 PF00076 129 - 195 9.3e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016233)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g06650
rosa_chinensis RchiOBHm_Chr2g0092401 RchiOBHm_Chr6g0294311
rosa_laevigata RLG00000016307
rosa_multiflora Rmu_co8481273.1_g000001 Rmu_sc0001195.1_g000020
rosa_roxburghii Rroxscaffold_2G00149150
rosa_rugosa Rorug02G0025800
rosa_samantha Rh2AG071800 Rh2BG071800 Rh2CG073200 Rh2DG070300 Rh6CG369900
rosa_wichuraiana Rw2G006080 Rw6G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 47, 68, 128
AccB7I CCANNNNNTGG 1 cut(s) 41
AccBSI CCGCTC 1 cut(s) 22
AccIII TCCGGA 1 cut(s) 275
AciI CCGC 3 cut(s) 11, 22, 263
AcoI YGGCCR 3 cut(s) 12, 32, 541
AcsI RAATTY 3 cut(s) 38, 379, 560
AfaI GTAC 2 cut(s) 160, 322
AfiI CCNNNNNNNGG 3 cut(s) 21, 41, 406
AgsI TTSAA 1 cut(s) 565
AhlI ACTAGT 1 cut(s) 161
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 1 cut(s) 480
Ama87I CYCGRG 1 cut(s) 414
Aor13HI TCCGGA 1 cut(s) 275
AoxI GGCC 4 cut(s) 12, 32, 541, 606
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 3 cut(s) 38, 379, 560
AspS9I GGNCC 2 cut(s) 418, 606
AsuC2I CCSGG 4 cut(s) 336, 415, 416, 596
AsuHPI GGTGA 3 cut(s) 233, 403, 464
AvaI CYCGRG 1 cut(s) 414
AvaII GGWCC 1 cut(s) 418
BaeGI GKGCMC 1 cut(s) 245
BaeI ACNNNNGTAYC 2 cut(s) 312, 345
BalI TGGCCA 1 cut(s) 34
BanI GGYRCC 3 cut(s) 47, 68, 128
BanII GRGCYC 1 cut(s) 364
Bbv12I GWGCWC 1 cut(s) 469
BbvI GCAGC 1 cut(s) 311
BceAI ACGGC 3 cut(s) 35, 447, 556
BciT130I CCWGG 1 cut(s) 31
BciVI GTATCC 1 cut(s) 403
BcnI CCSGG 4 cut(s) 336, 415, 416, 596
BcoDI GTCTC 1 cut(s) 480
BcuI ACTAGT 1 cut(s) 161
BfaI CTAG 2 cut(s) 162, 309
BfuI GTATCC 1 cut(s) 403
BglII AGATCT 1 cut(s) 253
BisI GCNGC 3 cut(s) 12, 23, 300
BlsI GCNGC 3 cut(s) 13, 24, 301
BmcAI AGTACT 1 cut(s) 160
Bme1390I CCNGG 5 cut(s) 31, 336, 415, 416, 596
Bme18I GGWCC 1 cut(s) 418
BmeT110I CYCGRG 1 cut(s) 414
BmgT120I GGNCC 2 cut(s) 418, 606
BmiI GGNNCC 5 cut(s) 49, 70, 130, 419, 420
BmrFI CCNGG 5 cut(s) 31, 336, 415, 416, 596
BpuEI CTTGAG 2 cut(s) 176, 500
BpuMI CCSGG 4 cut(s) 336, 415, 416, 596
BsaJI CCNNGG 4 cut(s) 15, 117, 294, 414
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 41, 406
Bse1I ACTGG 2 cut(s) 233, 322
BseAI TCCGGA 1 cut(s) 275
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 4 cut(s) 15, 117, 294, 414
BseGI GGATG 2 cut(s) 290, 588
BseLI CCNNNNNNNGG 3 cut(s) 21, 41, 406
BseMII CTCAG 2 cut(s) 356, 541
BseNI ACTGG 2 cut(s) 233, 322
BseRI GAGGAG 2 cut(s) 110, 189
BseSI GKGCMC 1 cut(s) 245
BseX3I CGGCCG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 4 cut(s) 14, 34, 543, 608
BshNI GGYRCC 3 cut(s) 47, 68, 128
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 469
BsiHKCI CYCGRG 1 cut(s) 414
BsiSI CCGG 4 cut(s) 276, 335, 415, 595
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 3 cut(s) 21, 41, 406
BsmAI GTCTC 1 cut(s) 480
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 4 cut(s) 14, 34, 543, 608
BsoBI CYCGRG 1 cut(s) 414
Bsp1286I GDGCHC 3 cut(s) 245, 364, 469
Bsp13I TCCGGA 1 cut(s) 275
Bsp143I GATC 2 cut(s) 99, 253
BspACI CCGC 3 cut(s) 11, 22, 263
BspANI GGCC 4 cut(s) 14, 34, 543, 608
BspCNI CTCAG 2 cut(s) 357, 540
BspEI TCCGGA 1 cut(s) 275
BspLI GGNNCC 5 cut(s) 49, 70, 130, 419, 420
BspT107I GGYRCC 3 cut(s) 47, 68, 128
BsrBI CCGCTC 1 cut(s) 22
BsrI ACTGG 2 cut(s) 233, 322
BssECI CCNNGG 4 cut(s) 15, 117, 294, 414
BssMI GATC 2 cut(s) 99, 253
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 1 cut(s) 240
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 365, 527
BstDSI CCRYGG 1 cut(s) 15
BstEII GGTNACC 1 cut(s) 221
BstENI CCTNNNNNAGG 1 cut(s) 404
BstF5I GGATG 2 cut(s) 290, 588
BstKTI GATC 2 cut(s) 102, 256
BstMAI GTCTC 1 cut(s) 480
BstMBI GATC 2 cut(s) 99, 253
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 1 cut(s) 31
BstPI GGTNACC 1 cut(s) 221
BstSCI CCNGG 5 cut(s) 29, 334, 413, 414, 594
BstSLI GKGCMC 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BstZI CGGCCG 1 cut(s) 12
BsuI GTATCC 1 cut(s) 403
BsuRI GGCC 4 cut(s) 14, 34, 543, 608
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 2 cut(s) 290, 588
BtsIMutI CAGTG 2 cut(s) 226, 245
Cac8I GCNNGC 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 418, 606
Cfr9I CCCGGG 1 cut(s) 414
Csp6I GTAC 2 cut(s) 159, 321
CviAII CATG 3 cut(s) 103, 431, 470
CviQI GTAC 2 cut(s) 159, 321
DdeI CTNAG 2 cut(s) 365, 527
DpnI GATC 2 cut(s) 101, 255
DpnII GATC 2 cut(s) 99, 253
EaeI YGGCCR 3 cut(s) 12, 32, 541
EagI CGGCCG 1 cut(s) 12
EclXI CGGCCG 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 418
Eco52I CGGCCG 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 414
Eco91I GGTNACC 1 cut(s) 221
EcoNI CCTNNNNNAGG 1 cut(s) 404
EcoO109I RGGNCCY 1 cut(s) 418
EcoO65I GGTNACC 1 cut(s) 221
EcoRI GAATTC 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 3 cut(s) 106, 434, 473
FaiI YATR 9 cut(s) 104, 247, 325, 432, 458, 471, 554, 573, 579
FaqI GGGAC 1 cut(s) 431
FatI CATG 3 cut(s) 102, 430, 469
FauI CCCGC 1 cut(s) 270
Fnu4HI GCNGC 3 cut(s) 12, 23, 300
FokI GGATG 2 cut(s) 277, 575
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 3 cut(s) 12, 23, 300
FspBI CTAG 2 cut(s) 162, 309
GluI GCNGC 3 cut(s) 12, 23, 300
HaeIII GGCC 4 cut(s) 14, 34, 543, 608
HapII CCGG 4 cut(s) 276, 335, 415, 595
Hin1II CATG 3 cut(s) 106, 434, 473
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 1 cut(s) 268
HpaI GTTAAC 1 cut(s) 520
HpaII CCGG 4 cut(s) 276, 335, 415, 595
HphI GGTGA 3 cut(s) 233, 403, 464
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 4 cut(s) 78, 295, 366, 406
Hpy188III TCNNGA 2 cut(s) 276, 479
Hpy8I GTNNAC 1 cut(s) 520
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 2 cut(s) 236, 430
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 2 cut(s) 365, 527
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 3 cut(s) 106, 434, 473
KflI GGGWCCC 1 cut(s) 418
Kpn2I TCCGGA 1 cut(s) 275
KspAI GTTAAC 1 cut(s) 520
Kzo9I GATC 2 cut(s) 99, 253
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 9 cut(s) 16, 43, 51, 214, 289, 303, 348, 428, 608
Lsp1109I GCAGC 1 cut(s) 311
MaeI CTAG 2 cut(s) 162, 309
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 2 cut(s) 221, 452
MalI GATC 2 cut(s) 101, 255
MbiI CCGCTC 1 cut(s) 22
MboI GATC 2 cut(s) 99, 253
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 3 cut(s) 245, 364, 469
MlsI TGGCCA 1 cut(s) 34
MluCI AATT 4 cut(s) 38, 379, 560, 616
MluNI TGGCCA 1 cut(s) 34
MlyI GAGTC 1 cut(s) 277
MnlI CCTC 9 cut(s) 88, 167, 170, 289, 342, 360, 400, 497, 602
Mox20I TGGCCA 1 cut(s) 34
MroI TCCGGA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 34
MseI TTAA 1 cut(s) 519
Msp20I TGGCCA 1 cut(s) 34
MspI CCGG 4 cut(s) 276, 335, 415, 595
MspR9I CCNGG 5 cut(s) 31, 336, 415, 416, 596
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 31
NciI CCSGG 4 cut(s) 336, 415, 416, 596
NdeII GATC 2 cut(s) 99, 253
NlaIII CATG 3 cut(s) 106, 434, 473
NlaIV GGNNCC 5 cut(s) 49, 70, 130, 419, 420
NmuCI GTSAC 2 cut(s) 221, 452
PflMI CCANNNNNTGG 1 cut(s) 41
PkrI GCNGC 3 cut(s) 13, 24, 301
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PpuMI RGGWCCY 1 cut(s) 418
Psp5II RGGWCCY 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 29
PspEI GGTNACC 1 cut(s) 221
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 5 cut(s) 49, 70, 130, 419, 420
PspPI GGNCC 2 cut(s) 418, 606
PspPPI RGGWCCY 1 cut(s) 418
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 2 cut(s) 160, 322
RsaNI GTAC 2 cut(s) 159, 321
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 3 cut(s) 12, 23, 300
Sau3AI GATC 2 cut(s) 99, 253
Sau96I GGNCC 2 cut(s) 418, 606
ScaI AGTACT 1 cut(s) 160
SchI GAGTC 1 cut(s) 277
ScrFI CCNGG 5 cut(s) 31, 336, 415, 416, 596
SduI GDGCHC 3 cut(s) 245, 364, 469
SetI ASST 5 cut(s) 198, 223, 290, 330, 402
SinI GGWCC 1 cut(s) 418
SmaI CCCGGG 1 cut(s) 416
SmlI CTYRAG 2 cut(s) 191, 479
SmoI CTYRAG 2 cut(s) 191, 479
SpeI ACTAGT 1 cut(s) 161
Sse9I AATT 4 cut(s) 38, 379, 560, 616
SsiI CCGC 3 cut(s) 11, 22, 263
SspMI CTAG 2 cut(s) 162, 309
StyD4I CCNGG 5 cut(s) 29, 334, 413, 414, 594
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 240
TaiI ACGT 1 cut(s) 330
TasI AATT 4 cut(s) 38, 379, 560, 616
TatI WGTACW 1 cut(s) 158
TauI GCSGC 2 cut(s) 14, 25
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 2 cut(s) 233, 245
TseFI GTSAC 2 cut(s) 221, 452
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 2 cut(s) 221, 452
TspDTI ATGAA 2 cut(s) 72, 447
TspMI CCCGGG 1 cut(s) 414
TspRI CASTG 2 cut(s) 233, 245
Van91I CCANNNNNTGG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 418
XagI CCTNNNNNAGG 1 cut(s) 404
XapI RAATTY 3 cut(s) 38, 379, 560
XmaI CCCGGG 1 cut(s) 414
XspI CTAG 2 cut(s) 162, 309
ZrmI AGTACT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.