RchiOBHm_Chr2g0102341

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018541
Physical Location & Seq
Reverse (-)
13798349 .. 13798600
252 bp
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UTR
Exon/CDS
Intron
PRQ47678

Sequence Viewer

Length: 252 bp
ATGCCTAAGGGGTTCTTGGATCGGACCAGGGGCATTGGTCTTGTCATCCCTGTATGGGCTCCTCAAGTGGACATCTTGGCGCATCGATCAGTCGGAGGGTTTTTGTCACATTGTGGATGGAGCTCAACATTGGAGAGCATCGCCAATGGAGTGCCGATGATTGCTTGGCAGCTCTACGCCGAGCAGAGGATGAGCGCCACGTTGCTGACGGAGGAGCTTGGCGTGGCAGTTCGGTCGAGGAAACCGCCGTGA

Protein Analysis

83

Amino Acids

9.07

Weight (kDa)

9.18

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 16 - 71 3.8e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018541)

Species Orthologous Gene IDs
pyrus_communis pycom15g23290
rosa_chinensis RchiOBHm_Chr2g0102341
rosa_multiflora Rmu_sc0003804.1_g000025
rosa_samantha Rh2BG160900 Rh2BG161300 Rh2BG162100 Rh2DG160300 Rh3DG277700 Rh7CG194100
rosa_wichuraiana Rw2G012090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 245
AclWI GGATC 1 cut(s) 27
AdeI CACNNNGTG 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 55, 186
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 3 cut(s) 123, 172, 217
AluI AGCT 3 cut(s) 123, 172, 217
Alw21I GWGCWC 1 cut(s) 125
AlwI GGATC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 169
AspLEI GCGC 2 cut(s) 82, 197
AspS9I GGNCC 1 cut(s) 24
AvaII GGWCC 1 cut(s) 24
AxyI CCTNAGG 1 cut(s) 6
BanII GRGCYC 2 cut(s) 61, 125
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 181
BccI CCATC 1 cut(s) 111
BceAI ACGGC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BciT130I CCWGG 1 cut(s) 28
BfoI RGCGCY 1 cut(s) 198
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
Bme1390I CCNGG 1 cut(s) 28
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 28
BmsI GCATC 2 cut(s) 91, 147
BpuEI CTTGAG 1 cut(s) 48
Bsa29I ATCGAT 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 186
Bse21I CCTNAGG 1 cut(s) 6
BseBI CCWGG 1 cut(s) 28
BseCI ATCGAT 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 3 cut(s) 45, 122, 195
BseLI CCNNNNNNNGG 2 cut(s) 55, 186
BseRI GAGGAG 2 cut(s) 51, 227
BseXI GCAGC 1 cut(s) 181
Bsh1285I CGRYCG 1 cut(s) 236
BshVI ATCGAT 1 cut(s) 85
BsiEI CGRYCG 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 55, 186
Bsp1286I GDGCHC 2 cut(s) 61, 125
Bsp143I GATC 2 cut(s) 19, 86
BspACI CCGC 1 cut(s) 245
BspDI ATCGAT 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 19, 86
Bst2UI CCWGG 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 3 cut(s) 45, 122, 195
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 2 cut(s) 82, 197
BstKTI GATC 2 cut(s) 22, 89
BstMBI GATC 2 cut(s) 19, 86
BstMCI CGRYCG 1 cut(s) 236
BstNI CCWGG 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 181
Bsu15I ATCGAT 1 cut(s) 85
Bsu36I CCTNAGG 1 cut(s) 6
BsuTUI ATCGAT 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 124
BtsCI GGATG 3 cut(s) 45, 122, 195
CfoI GCGC 2 cut(s) 82, 197
Cfr13I GGNCC 1 cut(s) 24
ClaI ATCGAT 1 cut(s) 85
CviJI RGCY 4 cut(s) 59, 123, 172, 217
CviKI_1 RGCY 4 cut(s) 59, 123, 172, 217
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 21, 88
DpnII GATC 2 cut(s) 19, 86
DraIII CACNNNGTG 1 cut(s) 113
Ecl136II GAGCTC 1 cut(s) 123
Eco24I GRGCYC 2 cut(s) 61, 125
Eco47I GGWCC 1 cut(s) 24
Eco53kI GAGCTC 1 cut(s) 123
Eco81I CCTNAGG 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 26
EcoT38I GRGCYC 2 cut(s) 61, 125
FaiI YATR 1 cut(s) 55
FalI AAGNNNNNCTT 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 3 cut(s) 32, 129, 202
FriOI GRGCYC 2 cut(s) 61, 125
Fsp4HI GCNGC 1 cut(s) 170
GlaI GCGC 2 cut(s) 81, 196
GluI GCNGC 1 cut(s) 170
HaeII RGCGCY 1 cut(s) 198
HhaI GCGC 2 cut(s) 82, 197
Hin6I GCGC 2 cut(s) 80, 195
HinP1I GCGC 2 cut(s) 80, 195
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 24, 95
Hpy8I GTNNAC 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 1 cut(s) 200
HspAI GCGC 2 cut(s) 80, 195
Kzo9I GATC 2 cut(s) 19, 86
LmnI GCTCC 3 cut(s) 64, 120, 214
LpnPI CCDG 3 cut(s) 13, 40, 63
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 2 cut(s) 91, 147
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 105
MalI GATC 2 cut(s) 21, 88
MboI GATC 2 cut(s) 19, 86
MhlI GDGCHC 2 cut(s) 61, 125
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 5 cut(s) 72, 89, 180, 205, 231
MspR9I CCNGG 1 cut(s) 28
MvaI CCWGG 1 cut(s) 28
NdeII GATC 2 cut(s) 19, 86
NlaIV GGNNCC 1 cut(s) 60
NmeAIII GCCGAG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 105
PkrI GCNGC 1 cut(s) 171
Psp124BI GAGCTC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 24
SacI GAGCTC 1 cut(s) 125
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 2 cut(s) 19, 86
Sau96I GGNCC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 28
SduI GDGCHC 2 cut(s) 61, 125
SetI ASST 4 cut(s) 125, 174, 203, 219
SfaNI GCATC 2 cut(s) 91, 147
SinI GGWCC 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
SsiI CCGC 1 cut(s) 245
SstI GAGCTC 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 26
TaiI ACGT 1 cut(s) 203
TaqI TCGA 2 cut(s) 85, 236
TaqII GACCGA 1 cut(s) 222
TseFI GTSAC 1 cut(s) 105
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.