phagosome-lysosome fusion involved in apoptotic cell clearance
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom15g23290 |
| rosa_chinensis | RchiOBHm_Chr2g0102341 |
| rosa_multiflora | Rmu_sc0003804.1_g000025 |
| rosa_samantha | Rh2BG160900 Rh2BG161300 Rh2BG162100 Rh2DG160300 Rh3DG277700 Rh7CG194100 |
| rosa_wichuraiana | Rw2G012090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 74 |
| AccB1I | GGYRCC | 1 cut(s) | 74 |
| AcuI | CTGAAG | 2 cut(s) | 54, 63 |
| AfaI | GTAC | 1 cut(s) | 76 |
| AgsI | TTSAA | 5 cut(s) | 116, 179, 187, 224, 236 |
| AjiI | CACGTC | 1 cut(s) | 137 |
| AluBI | AGCT | 1 cut(s) | 146 |
| AluI | AGCT | 1 cut(s) | 146 |
| Alw26I | GTCTC | 1 cut(s) | 276 |
| ApeKI | GCWGC | 1 cut(s) | 146 |
| Asp718I | GGTACC | 1 cut(s) | 74 |
| AspS9I | GGNCC | 1 cut(s) | 248 |
| AvaII | GGWCC | 1 cut(s) | 248 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 66, 99 |
| BanI | GGYRCC | 1 cut(s) | 74 |
| BbsI | GAAGAC | 1 cut(s) | 51 |
| BbvI | GCAGC | 1 cut(s) | 133 |
| BciVI | GTATCC | 1 cut(s) | 37 |
| BcoDI | GTCTC | 1 cut(s) | 276 |
| BfaI | CTAG | 1 cut(s) | 301 |
| BfuI | GTATCC | 1 cut(s) | 37 |
| BisI | GCNGC | 1 cut(s) | 147 |
| BlsI | GCNGC | 1 cut(s) | 148 |
| Bme18I | GGWCC | 1 cut(s) | 248 |
| BmgBI | CACGTC | 1 cut(s) | 137 |
| BmgT120I | GGNCC | 1 cut(s) | 248 |
| BmiI | GGNNCC | 1 cut(s) | 76 |
| BpiI | GAAGAC | 1 cut(s) | 51 |
| BsaJI | CCNNGG | 2 cut(s) | 78, 130 |
| BseDI | CCNNGG | 2 cut(s) | 78, 130 |
| BseXI | GCAGC | 1 cut(s) | 133 |
| BshNI | GGYRCC | 1 cut(s) | 74 |
| BsmAI | GTCTC | 1 cut(s) | 276 |
| BspLI | GGNNCC | 1 cut(s) | 76 |
| BspT107I | GGYRCC | 1 cut(s) | 74 |
| BssECI | CCNNGG | 2 cut(s) | 78, 130 |
| Bst4CI | ACNGT | 1 cut(s) | 131 |
| Bst6I | CTCTTC | 2 cut(s) | 261, 279 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 146 |
| BstDSI | CCRYGG | 1 cut(s) | 130 |
| BstMAI | GTCTC | 1 cut(s) | 276 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 146 |
| BstV1I | GCAGC | 1 cut(s) | 133 |
| BstV2I | GAAGAC | 1 cut(s) | 51 |
| BsuI | GTATCC | 1 cut(s) | 37 |
| BtgI | CCRYGG | 1 cut(s) | 130 |
| BtrI | CACGTC | 1 cut(s) | 137 |
| Cfr13I | GGNCC | 1 cut(s) | 248 |
| Csp6I | GTAC | 1 cut(s) | 75 |
| CviJI | RGCY | 2 cut(s) | 112, 146 |
| CviKI_1 | RGCY | 2 cut(s) | 112, 146 |
| CviQI | GTAC | 1 cut(s) | 75 |
| Eam1104I | CTCTTC | 2 cut(s) | 261, 279 |
| EarI | CTCTTC | 2 cut(s) | 261, 279 |
| Eco47I | GGWCC | 1 cut(s) | 248 |
| Eco57I | CTGAAG | 2 cut(s) | 54, 63 |
| FaiI | YATR | 1 cut(s) | 254 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 258, 290 |
| Fnu4HI | GCNGC | 1 cut(s) | 147 |
| Fsp4HI | GCNGC | 1 cut(s) | 147 |
| FspBI | CTAG | 1 cut(s) | 301 |
| GluI | GCNGC | 1 cut(s) | 147 |
| HinfI | GANTC | 1 cut(s) | 269 |
| Hpy166II | GTNNAC | 1 cut(s) | 134 |
| Hpy188I | TCNGA | 2 cut(s) | 43, 193 |
| Hpy8I | GTNNAC | 1 cut(s) | 134 |
| HpyAV | CCTTC | 1 cut(s) | 188 |
| HpyCH4III | ACNGT | 1 cut(s) | 131 |
| HpyCH4IV | ACGT | 1 cut(s) | 136 |
| HpyCH4V | TGCA | 2 cut(s) | 104, 140 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 146 |
| HpySE526I | ACGT | 1 cut(s) | 136 |
| KpnI | GGTACC | 1 cut(s) | 78 |
| LpnPI | CCDG | 1 cut(s) | 57 |
| Lsp1109I | GCAGC | 1 cut(s) | 133 |
| MaeI | CTAG | 1 cut(s) | 301 |
| MaeII | ACGT | 1 cut(s) | 136 |
| MboII | GAAGA | 3 cut(s) | 56, 266, 278 |
| MluCI | AATT | 2 cut(s) | 89, 182 |
| MlyI | GAGTC | 1 cut(s) | 278 |
| MmeI | TCCRAC | 1 cut(s) | 64 |
| MnlI | CCTC | 2 cut(s) | 40, 73 |
| MseI | TTAA | 2 cut(s) | 92, 153 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 146 |
| NlaIV | GGNNCC | 1 cut(s) | 76 |
| PkrI | GCNGC | 1 cut(s) | 148 |
| PleI | GAGTC | 1 cut(s) | 277 |
| PpsI | GAGTC | 1 cut(s) | 277 |
| PspN4I | GGNNCC | 1 cut(s) | 76 |
| PspPI | GGNCC | 1 cut(s) | 248 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 108, 140 |
| RsaI | GTAC | 1 cut(s) | 76 |
| RsaNI | GTAC | 1 cut(s) | 75 |
| SaqAI | TTAA | 2 cut(s) | 92, 153 |
| SatI | GCNGC | 1 cut(s) | 147 |
| Sau96I | GGNCC | 1 cut(s) | 248 |
| SchI | GAGTC | 1 cut(s) | 278 |
| SetI | ASST | 5 cut(s) | 76, 84, 139, 148, 253 |
| SinI | GGWCC | 1 cut(s) | 248 |
| Sse9I | AATT | 2 cut(s) | 89, 182 |
| SspMI | CTAG | 1 cut(s) | 301 |
| TaaI | ACNGT | 1 cut(s) | 131 |
| TaiI | ACGT | 1 cut(s) | 139 |
| TasI | AATT | 2 cut(s) | 89, 182 |
| Tru1I | TTAA | 2 cut(s) | 92, 153 |
| Tru9I | TTAA | 2 cut(s) | 92, 153 |
| TseI | GCWGC | 1 cut(s) | 146 |
| TspDTI | ATGAA | 1 cut(s) | 270 |
| VpaK11BI | GGWCC | 1 cut(s) | 248 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 128 |
| XspI | CTAG | 1 cut(s) | 301 |