Rw2G012090

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018541
Physical Location & Seq
Reverse (-)
12396917 .. 12398477
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G012090.1

Sequence Viewer

Length: 849 bp
ATGCATGGATCATGGATGGTGAGTCATCTAATTAGCTCAAGCCTAATTGCTCCAACGCAGTTTTGTCCATTTTCATTTGGGGATCGCCAGACGGCTCTTGCTTCAAGTGATGGAATTTTACTAAACATATGGGAGGAGCTCGAGCCGAAGACACTGGCATCACTTAGATCTGAGAAACTCCTGGGCCGATTTACGAAGGTGCCCGTTTATCCAATCGGGCCATTGATCAGGCCCAAATCCAATGCATCATTTGGTCCAAAGGAGAAGGTATTGTTTGATTGGCAAGACAAGCAGCCCAACGAGTCAGTGATTTACGAGCAAATGACCGGACTCGCTTGGGGTTTGGAGCTTAGTAAGCAGACGTTCGTTTGGGTAGTAACGGTTACGACTTACGACGATGACAATAACCCATTGAAGCTCATGCCTAAGGGGTTCTTGGATCGGACCGGGGGCATTGGTCTTGTCATCCCTGTATGGGCTCCTCAAGTGGACATCTTGGCGCATCGATCAGTCGGAGGGTTTTTGTCACATTGTGGATGGAACTCAACATTGGAGAGCATCGCCAATGGAGTGCCGATGATTGCTTGGCCGCTCTACGCCGAGCAGAGGATGAGCGCCACGTTGCTGACGGAGGAGCTTGGCGTGGCAGTTCGGTCGAGGAAACCGCCGTGGGAGAGGGTGGTTGAGAGGGAAGAGATTAAGGAGATGGTGAGAAAGATAATCGATATCAAAGGGTTTGCTATGAGAGAAAGAGCCCATAAGCTAAAATCAAGCGGTATAGAAGCTTTAGGAAAAGGTGGTTCATCATATAAGGTTCTTTCTCAATTAGCAAAACCGAATGAACAATGA

Protein Analysis

282

Amino Acids

31.48

Weight (kDa)

8.76

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 106 - 211 2.4e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018541)

Species Orthologous Gene IDs
pyrus_communis pycom15g23290
rosa_chinensis RchiOBHm_Chr2g0102341
rosa_multiflora Rmu_sc0003804.1_g000025
rosa_samantha Rh2BG160900 Rh2BG161300 Rh2BG162100 Rh2DG160300 Rh3DG277700 Rh7CG194100
rosa_wichuraiana Rw2G012090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 199
AccBSI CCGCTC 1 cut(s) 592
AciI CCGC 3 cut(s) 590, 665, 774
AclWI GGATC 3 cut(s) 16, 90, 447
AcoI YGGCCR 1 cut(s) 587
AcsI RAATTY 1 cut(s) 114
AdeI CACNNNGTG 1 cut(s) 533
AfiI CCNNNNNNNGG 2 cut(s) 475, 606
AgsI TTSAA 2 cut(s) 105, 415
AjnI CCWGG 1 cut(s) 180
AjuI GAANNNNNNNTTGG 2 cut(s) 533, 565
AluBI AGCT 7 cut(s) 36, 139, 349, 418, 637, 763, 785
AluI AGCT 7 cut(s) 36, 139, 349, 418, 637, 763, 785
Alw21I GWGCWC 1 cut(s) 141
AlwI GGATC 3 cut(s) 16, 90, 447
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 4 cut(s) 184, 218, 230, 587
ApeKI GCWGC 1 cut(s) 292
ApoI RAATTY 1 cut(s) 114
AspLEI GCGC 2 cut(s) 502, 617
AspS9I GGNCC 5 cut(s) 184, 218, 231, 254, 444
AsuC2I CCSGG 1 cut(s) 448
AsuHPI GGTGA 2 cut(s) 31, 721
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 2 cut(s) 254, 444
AxyI CCTNAGG 1 cut(s) 426
BaeGI GKGCMC 1 cut(s) 204
BanI GGYRCC 1 cut(s) 199
BanII GRGCYC 3 cut(s) 141, 481, 757
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 304
BccI CCATC 4 cut(s) 10, 104, 531, 700
BceAI ACGGC 2 cut(s) 108, 652
BcgI CGANNNNNNTGC 2 cut(s) 636, 670
BciT130I CCWGG 1 cut(s) 182
BclI TGATCA 1 cut(s) 225
BcnI CCSGG 1 cut(s) 448
BfoI RGCGCY 1 cut(s) 618
BglII AGATCT 1 cut(s) 167
BisI GCNGC 2 cut(s) 293, 590
BlsI GCNGC 2 cut(s) 294, 591
Bme1390I CCNGG 2 cut(s) 182, 448
Bme18I GGWCC 2 cut(s) 254, 444
BmeT110I CYCGRG 1 cut(s) 140
BmgT120I GGNCC 5 cut(s) 184, 218, 231, 254, 444
BmiI GGNNCC 2 cut(s) 201, 480
BmrFI CCNGG 2 cut(s) 182, 448
BmsI GCATC 4 cut(s) 167, 254, 511, 567
BpiI GAAGAC 1 cut(s) 155
BpuEI CTTGAG 2 cut(s) 22, 468
BpuMI CCSGG 1 cut(s) 448
Bsa29I ATCGAT 2 cut(s) 505, 723
BsaJI CCNNGG 3 cut(s) 181, 447, 668
BsaWI WCCGGW 1 cut(s) 326
Bsc4I CCNNNNNNNGG 2 cut(s) 475, 606
Bse1I ACTGG 1 cut(s) 159
Bse21I CCTNAGG 1 cut(s) 426
BseBI CCWGG 1 cut(s) 182
BseCI ATCGAT 2 cut(s) 505, 723
BseDI CCNNGG 3 cut(s) 181, 447, 668
BseGI GGATG 4 cut(s) 21, 465, 542, 615
BseLI CCNNNNNNNGG 2 cut(s) 475, 606
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 159
BseRI GAGGAG 3 cut(s) 149, 471, 647
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 1 cut(s) 304
Bsh1285I CGRYCG 1 cut(s) 656
BshFI GGCC 4 cut(s) 186, 220, 232, 589
BshNI GGYRCC 1 cut(s) 199
BshVI ATCGAT 2 cut(s) 505, 723
BsiEI CGRYCG 1 cut(s) 656
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 2 cut(s) 327, 447
BslI CCNNNNNNNGG 2 cut(s) 475, 606
BsnI GGCC 4 cut(s) 186, 220, 232, 589
BsoBI CYCGRG 1 cut(s) 140
Bsp1286I GDGCHC 4 cut(s) 141, 204, 481, 757
Bsp143I GATC 6 cut(s) 8, 82, 167, 225, 439, 506
BspACI CCGC 3 cut(s) 590, 665, 774
BspANI GGCC 4 cut(s) 186, 220, 232, 589
BspCNI CTCAG 1 cut(s) 163
BspDI ATCGAT 2 cut(s) 505, 723
BspLI GGNNCC 2 cut(s) 201, 480
BspPI GGATC 3 cut(s) 16, 90, 447
BspT107I GGYRCC 1 cut(s) 199
BsrBI CCGCTC 1 cut(s) 592
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 3 cut(s) 181, 447, 668
BssMI GATC 6 cut(s) 8, 82, 167, 225, 439, 506
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 1 cut(s) 687
BstDEI CTNAG 4 cut(s) 164, 171, 350, 426
BstDSI CCRYGG 1 cut(s) 668
BstF5I GGATG 4 cut(s) 21, 465, 542, 615
BstH2I RGCGCY 1 cut(s) 618
BstHHI GCGC 2 cut(s) 502, 617
BstKTI GATC 6 cut(s) 11, 85, 170, 228, 442, 509
BstMBI GATC 6 cut(s) 8, 82, 167, 225, 439, 506
BstMCI CGRYCG 1 cut(s) 656
BstMWI GCNNNNNNNGC 2 cut(s) 289, 355
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 2 cut(s) 180, 446
BstSLI GKGCMC 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
Bsu15I ATCGAT 2 cut(s) 505, 723
Bsu36I CCTNAGG 1 cut(s) 426
BsuRI GGCC 4 cut(s) 186, 220, 232, 589
BsuTUI ATCGAT 2 cut(s) 505, 723
BtgI CCRYGG 1 cut(s) 668
BtgZI GCGATG 1 cut(s) 544
BtsCI GGATG 4 cut(s) 21, 465, 542, 615
BtsIMutI CAGTG 2 cut(s) 152, 312
CfoI GCGC 2 cut(s) 502, 617
Cfr13I GGNCC 5 cut(s) 184, 218, 231, 254, 444
ClaI ATCGAT 2 cut(s) 505, 723
CpoI CGGWCCG 1 cut(s) 444
CspI CGGWCCG 1 cut(s) 444
CviAII CATG 3 cut(s) 5, 12, 421
DdeI CTNAG 4 cut(s) 164, 171, 350, 426
DpnI GATC 6 cut(s) 10, 84, 169, 227, 441, 508
DpnII GATC 6 cut(s) 8, 82, 167, 225, 439, 506
DraIII CACNNNGTG 1 cut(s) 533
EaeI YGGCCR 1 cut(s) 587
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
Ecl136II GAGCTC 1 cut(s) 139
Eco24I GRGCYC 3 cut(s) 141, 481, 757
Eco32I GATATC 1 cut(s) 727
Eco47I GGWCC 2 cut(s) 254, 444
Eco53kI GAGCTC 1 cut(s) 139
Eco81I CCTNAGG 1 cut(s) 426
Eco88I CYCGRG 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 180
EcoRV GATATC 1 cut(s) 727
EcoT22I ATGCAT 2 cut(s) 6, 247
EcoT38I GRGCYC 3 cut(s) 141, 481, 757
FaeI CATG 3 cut(s) 8, 15, 424
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FatI CATG 3 cut(s) 4, 11, 420
FauNDI CATATG 1 cut(s) 128
FbaI TGATCA 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 293, 590
FokI GGATG 4 cut(s) 28, 452, 549, 622
FriOI GRGCYC 3 cut(s) 141, 481, 757
Fsp4HI GCNGC 2 cut(s) 293, 590
GlaI GCGC 2 cut(s) 501, 616
GluI GCNGC 2 cut(s) 293, 590
HaeII RGCGCY 1 cut(s) 618
HaeIII GGCC 4 cut(s) 186, 220, 232, 589
HapII CCGG 2 cut(s) 327, 447
HhaI GCGC 2 cut(s) 502, 617
Hin1II CATG 3 cut(s) 8, 15, 424
Hin6I GCGC 2 cut(s) 500, 615
HinP1I GCGC 2 cut(s) 500, 615
HindIII AAGCTT 1 cut(s) 783
HinfI GANTC 3 cut(s) 22, 302, 330
HpaII CCGG 2 cut(s) 327, 447
HphI GGTGA 2 cut(s) 31, 721
Hpy166II GTNNAC 1 cut(s) 490
Hpy188I TCNGA 3 cut(s) 172, 444, 515
Hpy8I GTNNAC 1 cut(s) 490
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 2 cut(s) 190, 259
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 2 cut(s) 362, 620
HpyCH4V TGCA 2 cut(s) 4, 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 289, 355
HpyF3I CTNAG 4 cut(s) 164, 171, 350, 426
HpySE526I ACGT 2 cut(s) 362, 620
Hsp92II CATG 3 cut(s) 8, 15, 424
HspAI GCGC 2 cut(s) 500, 615
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 6 cut(s) 8, 82, 167, 225, 439, 506
LmnI GCTCC 5 cut(s) 55, 136, 346, 484, 634
LpnPI CCDG 8 cut(s) 101, 140, 167, 194, 214, 340, 460, 483
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 4 cut(s) 167, 254, 511, 567
MaeII ACGT 2 cut(s) 362, 620
MaeIII GTNAC 3 cut(s) 376, 382, 525
MalI GATC 6 cut(s) 10, 84, 169, 227, 441, 508
MbiI CCGCTC 1 cut(s) 592
MboI GATC 6 cut(s) 8, 82, 167, 225, 439, 506
MboII GAAGA 2 cut(s) 160, 704
MflI RGATCY 1 cut(s) 167
MhlI GDGCHC 4 cut(s) 141, 204, 481, 757
MluCI AATT 4 cut(s) 30, 45, 114, 824
MlyI GAGTC 3 cut(s) 31, 311, 324
MmeI TCCRAC 2 cut(s) 77, 493
MnlI CCTC 8 cut(s) 127, 492, 509, 600, 625, 651, 669, 681
Mph1103I ATGCAT 2 cut(s) 6, 247
MseI TTAA 1 cut(s) 699
MspI CCGG 2 cut(s) 327, 447
MspR9I CCNGG 2 cut(s) 182, 448
MvaI CCWGG 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 289, 355
NciI CCSGG 1 cut(s) 448
NdeI CATATG 1 cut(s) 128
NdeII GATC 6 cut(s) 8, 82, 167, 225, 439, 506
NlaIII CATG 3 cut(s) 8, 15, 424
NlaIV GGNNCC 2 cut(s) 201, 480
NmeAIII GCCGAG 1 cut(s) 625
NmuCI GTSAC 1 cut(s) 525
NsiI ATGCAT 2 cut(s) 6, 247
PaeR7I CTCGAG 1 cut(s) 140
PkrI GCNGC 2 cut(s) 294, 591
PleI GAGTC 3 cut(s) 30, 310, 324
PpsI GAGTC 3 cut(s) 30, 310, 324
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 201, 480
PspPI GGNCC 5 cut(s) 184, 218, 231, 254, 444
PspXI VCTCGAGB 1 cut(s) 140
PsuI RGATCY 1 cut(s) 167
Rsr2I CGGWCCG 1 cut(s) 444
RsrII CGGWCCG 1 cut(s) 444
SacI GAGCTC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 699
SatI GCNGC 2 cut(s) 293, 590
Sau3AI GATC 6 cut(s) 8, 82, 167, 225, 439, 506
Sau96I GGNCC 5 cut(s) 184, 218, 231, 254, 444
SchI GAGTC 3 cut(s) 31, 311, 324
ScrFI CCNGG 2 cut(s) 182, 448
SduI GDGCHC 4 cut(s) 141, 204, 481, 757
SfaNI GCATC 4 cut(s) 167, 254, 511, 567
Sfr274I CTCGAG 1 cut(s) 140
SinI GGWCC 2 cut(s) 254, 444
SlaI CTCGAG 1 cut(s) 140
SmlI CTYRAG 3 cut(s) 37, 140, 483
SmoI CTYRAG 3 cut(s) 37, 140, 483
Sse9I AATT 4 cut(s) 30, 45, 114, 824
SsiI CCGC 3 cut(s) 590, 665, 774
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 180, 446
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 2 cut(s) 365, 623
TaqI TCGA 4 cut(s) 141, 505, 656, 723
TaqII GACCGA 1 cut(s) 642
TasI AATT 4 cut(s) 30, 45, 114, 824
TauI GCSGC 1 cut(s) 592
Tru1I TTAA 1 cut(s) 699
Tru9I TTAA 1 cut(s) 699
TscAI CASTG 2 cut(s) 159, 312
TseFI GTSAC 1 cut(s) 525
TseI GCWGC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 525
TspDTI ATGAA 2 cut(s) 63, 792
TspGWI ACGGA 1 cut(s) 644
TspRI CASTG 2 cut(s) 159, 312
VpaK11BI GGWCC 2 cut(s) 254, 444
XapI RAATTY 1 cut(s) 114
XhoI CTCGAG 1 cut(s) 140
Zsp2I ATGCAT 2 cut(s) 6, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.