phagosome-lysosome fusion involved in apoptotic cell clearance
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom15g23290 |
| rosa_chinensis | RchiOBHm_Chr2g0102341 |
| rosa_multiflora | Rmu_sc0003804.1_g000025 |
| rosa_samantha | Rh2BG160900 Rh2BG161300 Rh2BG162100 Rh2DG160300 Rh3DG277700 Rh7CG194100 |
| rosa_wichuraiana | Rw2G012090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 116 |
| AccB1I | GGYRCC | 1 cut(s) | 116 |
| AcuI | CTGAAG | 1 cut(s) | 96 |
| AfaI | GTAC | 1 cut(s) | 118 |
| AgsI | TTSAA | 2 cut(s) | 158, 209 |
| AjiI | CACGTC | 1 cut(s) | 179 |
| AluBI | AGCT | 1 cut(s) | 188 |
| AluI | AGCT | 1 cut(s) | 188 |
| Alw26I | GTCTC | 2 cut(s) | 27, 225 |
| ApeKI | GCWGC | 2 cut(s) | 188, 276 |
| Asp718I | GGTACC | 1 cut(s) | 116 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 108, 141 |
| BanI | GGYRCC | 1 cut(s) | 116 |
| BbvI | GCAGC | 2 cut(s) | 175, 263 |
| BciVI | GTATCC | 1 cut(s) | 79 |
| BcoDI | GTCTC | 2 cut(s) | 27, 225 |
| BfaI | CTAG | 1 cut(s) | 236 |
| BfuI | GTATCC | 1 cut(s) | 79 |
| BisI | GCNGC | 2 cut(s) | 189, 277 |
| BlsI | GCNGC | 2 cut(s) | 190, 278 |
| BmgBI | CACGTC | 1 cut(s) | 179 |
| BmiI | GGNNCC | 1 cut(s) | 118 |
| BpuEI | CTTGAG | 1 cut(s) | 9 |
| BsaJI | CCNNGG | 1 cut(s) | 120 |
| BseDI | CCNNGG | 1 cut(s) | 120 |
| BseXI | GCAGC | 2 cut(s) | 175, 263 |
| BshNI | GGYRCC | 1 cut(s) | 116 |
| BsmAI | GTCTC | 2 cut(s) | 27, 225 |
| BsmI | GAATGC | 1 cut(s) | 257 |
| BspLI | GGNNCC | 1 cut(s) | 118 |
| BspT107I | GGYRCC | 1 cut(s) | 116 |
| BssECI | CCNNGG | 1 cut(s) | 120 |
| Bst4CI | ACNGT | 1 cut(s) | 173 |
| Bst6I | CTCTTC | 3 cut(s) | 210, 228, 259 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 188 |
| BstMAI | GTCTC | 2 cut(s) | 27, 225 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 45, 188 |
| BstV1I | GCAGC | 2 cut(s) | 175, 263 |
| BsuI | GTATCC | 1 cut(s) | 79 |
| BtrI | CACGTC | 1 cut(s) | 179 |
| BtsIMutI | CAGTG | 1 cut(s) | 178 |
| Csp6I | GTAC | 1 cut(s) | 117 |
| CviJI | RGCY | 3 cut(s) | 154, 188, 276 |
| CviKI_1 | RGCY | 3 cut(s) | 154, 188, 276 |
| CviQI | GTAC | 1 cut(s) | 117 |
| Eam1104I | CTCTTC | 3 cut(s) | 210, 228, 259 |
| EarI | CTCTTC | 3 cut(s) | 210, 228, 259 |
| Eco57I | CTGAAG | 1 cut(s) | 96 |
| FaiI | YATR | 2 cut(s) | 42, 44 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 207, 239 |
| Fnu4HI | GCNGC | 2 cut(s) | 189, 277 |
| Fsp4HI | GCNGC | 2 cut(s) | 189, 277 |
| FspBI | CTAG | 1 cut(s) | 236 |
| GluI | GCNGC | 2 cut(s) | 189, 277 |
| HinfI | GANTC | 1 cut(s) | 218 |
| Hpy166II | GTNNAC | 1 cut(s) | 176 |
| Hpy188III | TCNNGA | 1 cut(s) | 206 |
| Hpy8I | GTNNAC | 1 cut(s) | 176 |
| HpyCH4III | ACNGT | 1 cut(s) | 173 |
| HpyCH4IV | ACGT | 1 cut(s) | 178 |
| HpyCH4V | TGCA | 3 cut(s) | 146, 182, 255 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 45, 188 |
| HpySE526I | ACGT | 1 cut(s) | 178 |
| KpnI | GGTACC | 1 cut(s) | 120 |
| LpnPI | CCDG | 4 cut(s) | 43, 49, 99, 136 |
| Lsp1109I | GCAGC | 2 cut(s) | 175, 263 |
| MaeI | CTAG | 1 cut(s) | 236 |
| MaeII | ACGT | 1 cut(s) | 178 |
| MboII | GAAGA | 4 cut(s) | 24, 215, 227, 276 |
| MluCI | AATT | 2 cut(s) | 11, 131 |
| MlyI | GAGTC | 1 cut(s) | 227 |
| MmeI | TCCRAC | 1 cut(s) | 106 |
| MnlI | CCTC | 3 cut(s) | 82, 115, 260 |
| MseI | TTAA | 2 cut(s) | 134, 195 |
| Mva1269I | GAATGC | 1 cut(s) | 257 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 45, 188 |
| NlaIV | GGNNCC | 1 cut(s) | 118 |
| PctI | GAATGC | 1 cut(s) | 257 |
| PkrI | GCNGC | 2 cut(s) | 190, 278 |
| PleI | GAGTC | 1 cut(s) | 226 |
| PpsI | GAGTC | 1 cut(s) | 226 |
| PspN4I | GGNNCC | 1 cut(s) | 118 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 150, 182 |
| RsaI | GTAC | 1 cut(s) | 118 |
| RsaNI | GTAC | 1 cut(s) | 117 |
| SaqAI | TTAA | 2 cut(s) | 134, 195 |
| SatI | GCNGC | 2 cut(s) | 189, 277 |
| SchI | GAGTC | 1 cut(s) | 227 |
| SetI | ASST | 5 cut(s) | 118, 126, 181, 190, 271 |
| SmlI | CTYRAG | 1 cut(s) | 24 |
| SmoI | CTYRAG | 1 cut(s) | 24 |
| Sse9I | AATT | 2 cut(s) | 11, 131 |
| SspMI | CTAG | 1 cut(s) | 236 |
| TaaI | ACNGT | 1 cut(s) | 173 |
| TaiI | ACGT | 1 cut(s) | 181 |
| TasI | AATT | 2 cut(s) | 11, 131 |
| Tru1I | TTAA | 2 cut(s) | 134, 195 |
| Tru9I | TTAA | 2 cut(s) | 134, 195 |
| TscAI | CASTG | 1 cut(s) | 178 |
| TseI | GCWGC | 2 cut(s) | 188, 276 |
| TspDTI | ATGAA | 1 cut(s) | 219 |
| TspRI | CASTG | 1 cut(s) | 178 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 170 |
| XspI | CTAG | 1 cut(s) | 236 |