Rh2BG160900

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018541
Physical Location & Seq
Reverse (-)
13916643 .. 13917071
429 bp
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UTR
Exon/CDS
Intron
Rh2BG160900.1

Sequence Viewer

Length: 429 bp
ATGCCTAAGGGGTTCTTGGATCGGACCAGGGGCATTGGTCTTGTCATCCCTGTATGGGCTCCTCAAGTGGACATCTTGGCGCATCGATCAGTCGGAGGGTTTTTGTCACATTGTGGATGGAGCTCAACATTGGAGAGCATCGCCAATGGAGTGCCGATGATTGCTTGGCCGCTCTACGCCGAGCAGAGGATGAGCGCCACGTTGCTGACGGAGGAGCTTGGCGTGGCAGTTCGGTCGAGGAAACCGCCGTGGGAGAGGGTGGTTGAGAGGGAAGAGATTAAGGAGATGGTGAGAAAGATAATCGATATCATAGGGTTTGCTATGAGAGAAAGAGCCCATAATCTAAAATCAAGCGGTATAGAAGCTTTAGGAAAAGGTGGTTCATCATATAAGGTTCTTTCTCAATTAGCAAAACCGAATGAACAATGA

Protein Analysis

142

Amino Acids

15.75

Weight (kDa)

9.46

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 17 - 71 3.4e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018541)

Species Orthologous Gene IDs
pyrus_communis pycom15g23290
rosa_chinensis RchiOBHm_Chr2g0102341
rosa_multiflora Rmu_sc0003804.1_g000025
rosa_samantha Rh2BG160900 Rh2BG161300 Rh2BG162100 Rh2DG160300 Rh3DG277700 Rh7CG194100
rosa_wichuraiana Rw2G012090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 172
AciI CCGC 3 cut(s) 170, 245, 354
AclWI GGATC 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 167
AdeI CACNNNGTG 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 55, 186
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 3 cut(s) 123, 217, 365
AluI AGCT 3 cut(s) 123, 217, 365
Alw21I GWGCWC 1 cut(s) 125
AlwI GGATC 1 cut(s) 27
AoxI GGCC 1 cut(s) 167
AspLEI GCGC 2 cut(s) 82, 197
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 301
AvaII GGWCC 1 cut(s) 24
AxyI CCTNAGG 1 cut(s) 6
BanII GRGCYC 3 cut(s) 61, 125, 337
Bbv12I GWGCWC 1 cut(s) 125
BccI CCATC 2 cut(s) 111, 280
BceAI ACGGC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BciT130I CCWGG 1 cut(s) 28
BfoI RGCGCY 1 cut(s) 198
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
Bme1390I CCNGG 1 cut(s) 28
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 28
BmsI GCATC 2 cut(s) 91, 147
BpuEI CTTGAG 1 cut(s) 48
Bsa29I ATCGAT 2 cut(s) 85, 303
BsaJI CCNNGG 2 cut(s) 27, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 186
Bse21I CCTNAGG 1 cut(s) 6
BseBI CCWGG 1 cut(s) 28
BseCI ATCGAT 2 cut(s) 85, 303
BseDI CCNNGG 2 cut(s) 27, 248
BseGI GGATG 3 cut(s) 45, 122, 195
BseLI CCNNNNNNNGG 2 cut(s) 55, 186
BseRI GAGGAG 2 cut(s) 51, 227
Bsh1285I CGRYCG 1 cut(s) 236
BshFI GGCC 1 cut(s) 169
BshVI ATCGAT 2 cut(s) 85, 303
BsiEI CGRYCG 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 55, 186
BsnI GGCC 1 cut(s) 169
Bsp1286I GDGCHC 3 cut(s) 61, 125, 337
Bsp143I GATC 2 cut(s) 19, 86
BspACI CCGC 3 cut(s) 170, 245, 354
BspANI GGCC 1 cut(s) 169
BspDI ATCGAT 2 cut(s) 85, 303
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 1 cut(s) 27
BsrBI CCGCTC 1 cut(s) 172
BssECI CCNNGG 2 cut(s) 27, 248
BssMI GATC 2 cut(s) 19, 86
Bst2UI CCWGG 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 248
BstF5I GGATG 3 cut(s) 45, 122, 195
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 2 cut(s) 82, 197
BstKTI GATC 2 cut(s) 22, 89
BstMBI GATC 2 cut(s) 19, 86
BstMCI CGRYCG 1 cut(s) 236
BstNI CCWGG 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 26
Bsu15I ATCGAT 2 cut(s) 85, 303
Bsu36I CCTNAGG 1 cut(s) 6
BsuRI GGCC 1 cut(s) 169
BsuTUI ATCGAT 2 cut(s) 85, 303
BtgI CCRYGG 1 cut(s) 248
BtgZI GCGATG 1 cut(s) 124
BtsCI GGATG 3 cut(s) 45, 122, 195
CfoI GCGC 2 cut(s) 82, 197
Cfr13I GGNCC 1 cut(s) 24
ClaI ATCGAT 2 cut(s) 85, 303
CviJI RGCY 6 cut(s) 59, 123, 169, 217, 335, 365
CviKI_1 RGCY 6 cut(s) 59, 123, 169, 217, 335, 365
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 21, 88
DpnII GATC 2 cut(s) 19, 86
DraIII CACNNNGTG 1 cut(s) 113
EaeI YGGCCR 1 cut(s) 167
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Ecl136II GAGCTC 1 cut(s) 123
Eco24I GRGCYC 3 cut(s) 61, 125, 337
Eco32I GATATC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 24
Eco53kI GAGCTC 1 cut(s) 123
Eco81I CCTNAGG 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 26
EcoRV GATATC 1 cut(s) 307
EcoT38I GRGCYC 3 cut(s) 61, 125, 337
FaiI YATR 7 cut(s) 55, 311, 323, 339, 359, 388, 390
FalI AAGNNNNNCTT 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 3 cut(s) 32, 129, 202
FriOI GRGCYC 3 cut(s) 61, 125, 337
Fsp4HI GCNGC 1 cut(s) 170
GlaI GCGC 2 cut(s) 81, 196
GluI GCNGC 1 cut(s) 170
HaeII RGCGCY 1 cut(s) 198
HaeIII GGCC 1 cut(s) 169
HhaI GCGC 2 cut(s) 82, 197
Hin6I GCGC 2 cut(s) 80, 195
HinP1I GCGC 2 cut(s) 80, 195
HindIII AAGCTT 1 cut(s) 363
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 24, 95
Hpy8I GTNNAC 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 1 cut(s) 200
HspAI GCGC 2 cut(s) 80, 195
Kzo9I GATC 2 cut(s) 19, 86
LmnI GCTCC 3 cut(s) 64, 120, 214
LpnPI CCDG 3 cut(s) 13, 40, 63
LweI GCATC 2 cut(s) 91, 147
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 105
MalI GATC 2 cut(s) 21, 88
MbiI CCGCTC 1 cut(s) 172
MboI GATC 2 cut(s) 19, 86
MboII GAAGA 1 cut(s) 284
MhlI GDGCHC 3 cut(s) 61, 125, 337
MluCI AATT 1 cut(s) 404
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 7 cut(s) 72, 89, 180, 205, 231, 249, 261
MseI TTAA 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 28
MvaI CCWGG 1 cut(s) 28
NdeII GATC 2 cut(s) 19, 86
NlaIV GGNNCC 1 cut(s) 60
NmeAIII GCCGAG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 105
PkrI GCNGC 1 cut(s) 171
Psp124BI GAGCTC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 24
SacI GAGCTC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 2 cut(s) 19, 86
Sau96I GGNCC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 28
SduI GDGCHC 3 cut(s) 61, 125, 337
SetI ASST 6 cut(s) 125, 203, 219, 367, 379, 396
SfaNI GCATC 2 cut(s) 91, 147
SinI GGWCC 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 1 cut(s) 404
SsiI CCGC 3 cut(s) 170, 245, 354
SstI GAGCTC 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 26
TaiI ACGT 1 cut(s) 203
TaqI TCGA 3 cut(s) 85, 236, 303
TaqII GACCGA 1 cut(s) 222
TasI AATT 1 cut(s) 404
TauI GCSGC 1 cut(s) 172
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TseFI GTSAC 1 cut(s) 105
Tsp45I GTSAC 1 cut(s) 105
TspDTI ATGAA 1 cut(s) 372
TspGWI ACGGA 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.