RchiOBHm_Chr2g0109091

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018161
Physical Location & Seq
Forward (+)
20473246 .. 20474772
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48294

Sequence Viewer

Length: 306 bp
ATGATCTCTGGTGACCGAATCGAACCGCTTGTCACGAACGCCGTCGTGCCTCTTGAATTCTTGCTCCAACGACGCAAAGGCAATCTTCACTGCTATGATTGTCAGAGGCGAGCTCGGGGCTCCAATACCCTGAGCGGTTCTACGTGGCGGCCTCCTACGCCGGTTTCGACGGATCTCCTCGCTCCTCCTCTAAAGCCGTTCGCGCCAAGTTCAACTCTGAGTCCGCTCTCATCCTCTACGCTCTCTATAAGCAGGTACTGCTCGATCGCAATTGCATTAGAAATATCAATGTGGACTGTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.07

Weight (kDa)

9.41

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 243
AccBSI CCGCTC 2 cut(s) 135, 226
AccII CGCG 1 cut(s) 203
AciI CCGC 4 cut(s) 26, 135, 148, 224
AclWI GGATC 1 cut(s) 180
AcsI RAATTY 1 cut(s) 56
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 2 cut(s) 56, 213
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw21I GWGCWC 1 cut(s) 115
AlwI GGATC 1 cut(s) 180
AlwNI CAGNNNCTG 1 cut(s) 258
Ama87I CYCGRG 1 cut(s) 114
AoxI GGCC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 56
ArsI GACNNNNNNTTYG 2 cut(s) 15, 47
AspLEI GCGC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 114
BanII GRGCYC 2 cut(s) 115, 122
Bbv12I GWGCWC 1 cut(s) 115
BceAI ACGGC 2 cut(s) 26, 181
BfuAI ACCTGC 1 cut(s) 243
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
BmeT110I CYCGRG 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 97, 129
Bpu10I CCTNAGC 1 cut(s) 131
BsaAI YACGTR 1 cut(s) 144
Bse118I RCCGGY 1 cut(s) 160
BseGI GGATG 1 cut(s) 230
BseMII CTCAG 2 cut(s) 122, 209
BseRI GAGGAG 3 cut(s) 167, 174, 177
Bsh1236I CGCG 1 cut(s) 203
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 1 cut(s) 151
BsiEI CGRYCG 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 115
BsiHKCI CYCGRG 1 cut(s) 114
BsiSI CCGG 1 cut(s) 161
BsnI GGCC 1 cut(s) 151
BsoBI CYCGRG 1 cut(s) 114
Bsp1286I GDGCHC 2 cut(s) 115, 122
Bsp143I GATC 3 cut(s) 3, 172, 264
BspACI CCGC 4 cut(s) 26, 135, 148, 224
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 2 cut(s) 123, 210
BspFNI CGCG 1 cut(s) 203
BspLI GGNNCC 1 cut(s) 121
BspMI ACCTGC 1 cut(s) 243
BspPI GGATC 1 cut(s) 180
BsrBI CCGCTC 2 cut(s) 135, 226
BsrFI RCCGGY 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 160
BssMI GATC 3 cut(s) 3, 172, 264
Bst4CI ACNGT 1 cut(s) 298
BstAPI GCANNNNNTGC 1 cut(s) 258
BstBAI YACGTR 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 131, 218
BstEII GGTNACC 1 cut(s) 11
BstF5I GGATG 1 cut(s) 230
BstFNI CGCG 1 cut(s) 203
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 3 cut(s) 6, 175, 267
BstMBI GATC 3 cut(s) 3, 172, 264
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 3 cut(s) 157, 202, 258
BstPI GGTNACC 1 cut(s) 11
BstUI CGCG 1 cut(s) 203
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 1 cut(s) 151
BtsCI GGATG 1 cut(s) 230
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 88
BveI ACCTGC 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 111
CaiI CAGNNNCTG 1 cut(s) 258
CfoI GCGC 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 160
CseI GACGC 1 cut(s) 81
Csp6I GTAC 1 cut(s) 256
CviJI RGCY 4 cut(s) 113, 120, 151, 196
CviKI_1 RGCY 4 cut(s) 113, 120, 151, 196
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 2 cut(s) 131, 218
DpnI GATC 3 cut(s) 5, 174, 266
DpnII GATC 3 cut(s) 3, 172, 264
Ecl136II GAGCTC 1 cut(s) 113
Eco24I GRGCYC 2 cut(s) 115, 122
Eco53kI GAGCTC 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 114
Eco91I GGTNACC 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 113
EcoO65I GGTNACC 1 cut(s) 11
EcoRI GAATTC 1 cut(s) 56
EcoT38I GRGCYC 2 cut(s) 115, 122
FaiI YATR 2 cut(s) 96, 248
FalI AAGNNNNNCTT 2 cut(s) 69, 101
Fnu4HI GCNGC 1 cut(s) 149
FokI GGATG 1 cut(s) 217
FriOI GRGCYC 2 cut(s) 115, 122
Fsp4HI GCNGC 1 cut(s) 149
GlaI GCGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 149
HaeIII GGCC 1 cut(s) 151
HapII CCGG 1 cut(s) 161
HgaI GACGC 1 cut(s) 81
HhaI GCGC 1 cut(s) 205
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HinfI GANTC 2 cut(s) 18, 220
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 294
Hpy188I TCNGA 2 cut(s) 105, 219
Hpy188III TCNNGA 2 cut(s) 34, 53
Hpy8I GTNNAC 1 cut(s) 294
Hpy99I CGWCG 3 cut(s) 47, 75, 172
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 202, 258
HpyF3I CTNAG 2 cut(s) 131, 218
HpySE526I ACGT 1 cut(s) 143
HspAI GCGC 1 cut(s) 203
Kzo9I GATC 3 cut(s) 3, 172, 264
LmnI GCTCC 3 cut(s) 69, 125, 187
LpnPI CCDG 3 cut(s) 143, 174, 238
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 2 cut(s) 11, 31
MalI GATC 3 cut(s) 5, 174, 266
MbiI CCGCTC 2 cut(s) 135, 226
MboI GATC 3 cut(s) 3, 172, 264
MboII GAAGA 1 cut(s) 77
MfeI CAATTG 1 cut(s) 270
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 2 cut(s) 115, 122
MluCI AATT 2 cut(s) 56, 270
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 7 cut(s) 60, 99, 162, 188, 195, 198, 244
MslI CAYNNNNRTG 1 cut(s) 93
MspI CCGG 1 cut(s) 161
MunI CAATTG 1 cut(s) 270
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 3 cut(s) 157, 202, 258
NdeII GATC 3 cut(s) 3, 172, 264
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 11, 31
PcsI WCGNNNNNNNCGW 1 cut(s) 164
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 1 cut(s) 150
Ple19I CGATCG 1 cut(s) 267
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
Ppu21I YACGTR 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 115
PspEI GGTNACC 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 258
PsuI RGATCY 1 cut(s) 172
PvuI CGATCG 1 cut(s) 267
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 93
SacI GAGCTC 1 cut(s) 115
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 3 cut(s) 3, 172, 264
SchI GAGTC 1 cut(s) 229
SduI GDGCHC 2 cut(s) 115, 122
SetI ASST 3 cut(s) 115, 146, 257
SmiMI CAYNNNNRTG 1 cut(s) 93
Sse9I AATT 2 cut(s) 56, 270
SsiI CCGC 4 cut(s) 26, 135, 148, 224
SstI GAGCTC 1 cut(s) 115
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 1 cut(s) 146
TaqI TCGA 3 cut(s) 21, 167, 263
TaqII GACCGA 1 cut(s) 30
TasI AATT 2 cut(s) 56, 270
TauI GCSGC 1 cut(s) 151
TfiI GAWTC 1 cut(s) 18
TscAI CASTG 1 cut(s) 95
TseFI GTSAC 2 cut(s) 11, 31
Tsp45I GTSAC 2 cut(s) 11, 31
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 1 cut(s) 95
XapI RAATTY 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.