Rh6CG304800

Mannosylglycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018161
Physical Location & Seq
Forward (+)
48479114 .. 48480504
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG304800.1

Sequence Viewer

Length: 462 bp
ATGGCTATAGATCGGGCGAGCTTGGGGCTCCAATACCTGAGCGGTTCTACGTGGCGGCCTCCTACGCCAGTTTCGACGGACCTCCTCGCTCCTCCTCTAAAGCTGTTCGCGCCAAGTTCAACTCTGAGTCCGTTGTCATCCTCTACGCTCTCTATAAGCAGTGATAGTGTTTTGGCAACCTTGGTGAAAAGCAAAGAATTGATGGATCCATTTTACGACTTGTGTAAGCTGTTAGGTACTCAGCACCTGGATCTGAATTTCCGTGGAATCAATTACTATGCAGAGATATATTTAAATGGGTACAAAAAGGTCTTTCCAAGAGGGATGTTTCGAAGGCATTCTCTAGATGTCACTGATATAGTACATGACAGTGAAAATATGCTTGCTGTTGTTGTTTACCCCAGATCATTGTGGTTATGTTTTATTTTGTTTAATGCCCTTATGGGAGGTTGTCCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_2 Glyco_hydro_2_C

Protein Analysis

153

Amino Acids

17.04

Weight (kDa)

7.72

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_2_N2 PF22666 77 - 133 2.5e-10 Glycosyl hydrolase 2 galactose-binding domain-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 42
AccII CGCG 1 cut(s) 110
AciI CCGC 2 cut(s) 42, 55
AclWI GGATC 3 cut(s) 200, 213, 258
AcsI RAATTY 1 cut(s) 256
AfaI GTAC 3 cut(s) 238, 302, 363
AgsI TTSAA 1 cut(s) 120
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 3 cut(s) 21, 103, 229
AluI AGCT 3 cut(s) 21, 103, 229
AlwI GGATC 3 cut(s) 200, 213, 258
AlwNI CAGNNNCTG 1 cut(s) 247
AoxI GGCC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 256
Asp700I GAANNNNTTC 1 cut(s) 337
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 196
AsuII TTCGAA 1 cut(s) 331
AvaII GGWCC 1 cut(s) 79
BamHI GGATCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 30
BccI CCATC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 248
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 29, 207
BmrFI CCNGG 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 38
Bpu14I TTCGAA 1 cut(s) 331
BsaAI YACGTR 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 180, 262
Bse1I ACTGG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 2 cut(s) 180, 262
BseGI GGATG 2 cut(s) 137, 330
BseMII CTCAG 3 cut(s) 29, 116, 254
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 3 cut(s) 74, 81, 84
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 1 cut(s) 58
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 4 cut(s) 10, 205, 250, 404
BspACI CCGC 2 cut(s) 42, 55
BspANI GGCC 1 cut(s) 58
BspCNI CTCAG 3 cut(s) 30, 117, 253
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 2 cut(s) 29, 207
BspPI GGATC 3 cut(s) 200, 213, 258
BspT104I TTCGAA 1 cut(s) 331
BsrBI CCGCTC 1 cut(s) 42
BsrI ACTGG 1 cut(s) 68
BssECI CCNNGG 2 cut(s) 180, 262
BssMI GATC 4 cut(s) 10, 205, 250, 404
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 371
BstBAI YACGTR 1 cut(s) 51
BstBI TTCGAA 1 cut(s) 331
BstC8I GCNNGC 2 cut(s) 19, 384
BstDEI CTNAG 3 cut(s) 38, 125, 240
BstDSI CCRYGG 1 cut(s) 262
BstF5I GGATG 2 cut(s) 137, 330
BstFNI CGCG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 4 cut(s) 13, 208, 253, 407
BstMBI GATC 4 cut(s) 10, 205, 250, 404
BstMWI GCNNNNNNNGC 2 cut(s) 64, 109
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 6
BstUI CGCG 1 cut(s) 110
BstX2I RGATCY 2 cut(s) 205, 250
BstYI RGATCY 2 cut(s) 205, 250
BsuRI GGCC 1 cut(s) 58
BtgI CCRYGG 1 cut(s) 262
BtsCI GGATG 2 cut(s) 137, 330
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 3 cut(s) 166, 351, 376
Cac8I GCNNGC 2 cut(s) 19, 384
CaiI CAGNNNCTG 1 cut(s) 247
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 3 cut(s) 237, 301, 362
CviAII CATG 1 cut(s) 365
CviJI RGCY 6 cut(s) 5, 21, 28, 58, 103, 229
CviKI_1 RGCY 6 cut(s) 5, 21, 28, 58, 103, 229
CviQI GTAC 3 cut(s) 237, 301, 362
DdeI CTNAG 3 cut(s) 38, 125, 240
DpnI GATC 4 cut(s) 12, 207, 252, 406
DpnII GATC 4 cut(s) 10, 205, 250, 404
DraI TTTAAA 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 1 cut(s) 368
FaiI YATR 9 cut(s) 8, 155, 279, 289, 359, 366, 380, 418, 443
FatI CATG 1 cut(s) 364
Fnu4HI GCNGC 1 cut(s) 56
FokI GGATG 2 cut(s) 124, 337
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 1 cut(s) 344
GlaI GCGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 56
HaeIII GGCC 1 cut(s) 58
HhaI GCGC 1 cut(s) 112
Hin1II CATG 1 cut(s) 368
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 2 cut(s) 127, 267
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 2 cut(s) 126, 255
Hpy188III TCNNGA 1 cut(s) 344
Hpy8I GTNNAC 1 cut(s) 397
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 327
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 109
HpyF3I CTNAG 3 cut(s) 38, 125, 240
HpySE526I ACGT 1 cut(s) 50
Hsp92II CATG 1 cut(s) 368
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 4 cut(s) 10, 205, 250, 404
LmnI GCTCC 2 cut(s) 33, 94
LpnPI CCDG 5 cut(s) 50, 81, 233, 260, 415
MaeI CTAG 1 cut(s) 344
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 349
MalI GATC 4 cut(s) 12, 207, 252, 406
MbiI CCGCTC 1 cut(s) 42
MboI GATC 4 cut(s) 10, 205, 250, 404
MflI RGATCY 2 cut(s) 205, 250
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 4 cut(s) 197, 256, 271, 457
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 8 cut(s) 69, 92, 95, 102, 105, 151, 314, 440
MroXI GAANNNNTTC 1 cut(s) 337
MseI TTAA 2 cut(s) 293, 432
MslI CAYNNNNRTG 1 cut(s) 369
MspR9I CCNGG 1 cut(s) 248
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 64, 109
NdeII GATC 4 cut(s) 10, 205, 250, 404
NlaIII CATG 1 cut(s) 368
NlaIV GGNNCC 2 cut(s) 29, 207
NmuCI GTSAC 1 cut(s) 349
NspV TTCGAA 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PctI GAATGC 1 cut(s) 337
PdmI GAANNNNTTC 1 cut(s) 337
PfeI GAWTC 1 cut(s) 267
PkrI GCNGC 1 cut(s) 57
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
Ppu21I YACGTR 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 29, 207
PspPI GGNCC 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 247
PsuI RGATCY 2 cut(s) 205, 250
RsaI GTAC 3 cut(s) 238, 302, 363
RsaNI GTAC 3 cut(s) 237, 301, 362
RseI CAYNNNNRTG 1 cut(s) 369
SaqAI TTAA 2 cut(s) 293, 432
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 4 cut(s) 10, 205, 250, 404
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 30
SfcI CTRYAG 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 331
SinI GGWCC 1 cut(s) 79
SmiI ATTTAAAT 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 369
Sse9I AATT 4 cut(s) 197, 256, 271, 457
SsiI CCGC 2 cut(s) 42, 55
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 1 cut(s) 180
SwaI ATTTAAAT 1 cut(s) 294
TaaI ACNGT 1 cut(s) 371
TaiI ACGT 1 cut(s) 53
TaqI TCGA 2 cut(s) 74, 331
TasI AATT 4 cut(s) 197, 256, 271, 457
TatI WGTACW 1 cut(s) 361
TauI GCSGC 1 cut(s) 58
TfiI GAWTC 1 cut(s) 267
Tru1I TTAA 2 cut(s) 293, 432
Tru9I TTAA 2 cut(s) 293, 432
TscAI CASTG 3 cut(s) 166, 358, 376
TseFI GTSAC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 349
TspGWI ACGGA 3 cut(s) 92, 120, 251
TspRI CASTG 3 cut(s) 166, 358, 376
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 256
XbaI TCTAGA 1 cut(s) 343
XmnI GAANNNNTTC 1 cut(s) 337
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.