Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018161

Physical Location & Seq

Genomic Coordinates Reverse (-)

13522991 .. 13524703

Gene Structure 1713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29920

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGCTATAGATCGGGCGAGCTCGGGGCTCCAATACCCTGAGCGGTTCTACGTGGCGGCCTCCTACGCCAGTTTCGACGGATCTCCTCACTCCTCCTCTAAAGCCGTTCGCGCCAAGTTCAACTCTGAGTCCGCTCTCATCCTCTACGCTCTCTATAAGCAGTTTACATGGTTGGTCAAGGATCGGCTCAAGTGCCAAGGGAAAATGGATTTTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006869 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0010033 GO:0010876 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033218 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP Kelch_3 Kelch_4 Kelch_5 Kelch_6

Protein Analysis

72

Amino Acids

8.14

Weight (kDa)

9.42

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018161)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0109091 RchiOBHm_Chr4g0393251 RchiOBHm_Chr4g0397481 RchiOBHm_Chr5g0019041
rosa_laevigata	RLG00000030795 RLG00000033474
rosa_samantha	Rh2AG380100 Rh2CG211400 Rh6BG206900 Rh6CG304800 Rh6CG313300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	43, 134
AccII	CGCG	1 cut(s)	111
AciI	CCGC	3 cut(s)	43, 56, 132
AclWI	GGATC	2 cut(s)	88, 189
AgsI	TTSAA	1 cut(s)	121
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
Alw21I	GWGCWC	1 cut(s)	23
AlwI	GGATC	2 cut(s)	88, 189
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	113
AvaI	CYCGRG	1 cut(s)	22
BanII	GRGCYC	2 cut(s)	23, 30
Bbv12I	GWGCWC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
BmeT110I	CYCGRG	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	138
BseMII	CTCAG	2 cut(s)	30, 117
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	3 cut(s)	75, 82, 85
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	22
BsnI	GGCC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	23, 30
Bsp143I	GATC	3 cut(s)	10, 80, 181
BspACI	CCGC	3 cut(s)	43, 56, 132
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	2 cut(s)	31, 118
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	29
BspPI	GGATC	2 cut(s)	88, 189
BsrBI	CCGCTC	2 cut(s)	43, 134
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	3 cut(s)	10, 80, 181
BssT1I	CCWWGG	1 cut(s)	196
BstBAI	YACGTR	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	2 cut(s)	39, 126
BstF5I	GGATG	1 cut(s)	138
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	3 cut(s)	13, 83, 184
BstMBI	GATC	3 cut(s)	10, 80, 181
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 110
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	1 cut(s)	113
CviAII	CATG	1 cut(s)	168
CviJI	RGCY	6 cut(s)	5, 21, 28, 59, 104, 187
CviKI_1	RGCY	6 cut(s)	5, 21, 28, 59, 104, 187
DdeI	CTNAG	2 cut(s)	39, 126
DpnI	GATC	3 cut(s)	12, 82, 183
DpnII	GATC	3 cut(s)	10, 80, 181
Ecl136II	GAGCTC	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	196
Eco24I	GRGCYC	2 cut(s)	23, 30
Eco53kI	GAGCTC	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	196
EcoT38I	GRGCYC	2 cut(s)	23, 30
ErhI	CCWWGG	1 cut(s)	196
FaeI	CATG	1 cut(s)	171
FaiI	YATR	3 cut(s)	8, 156, 169
FatI	CATG	1 cut(s)	167
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	2 cut(s)	23, 30
Fsp4HI	GCNGC	1 cut(s)	57
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	165
Hpy99I	CGWCG	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 110
HpyF3I	CTNAG	2 cut(s)	39, 126
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	171
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	3 cut(s)	10, 80, 181
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	2 cut(s)	51, 82
MaeII	ACGT	1 cut(s)	51
MalI	GATC	3 cut(s)	12, 82, 183
MbiI	CCGCTC	2 cut(s)	43, 134
MboI	GATC	3 cut(s)	10, 80, 181
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	2 cut(s)	23, 30
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	5 cut(s)	70, 96, 103, 106, 152
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	65, 110
NdeII	GATC	3 cut(s)	10, 80, 181
NlaIII	CATG	1 cut(s)	171
NlaIV	GGNNCC	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Ppu21I	YACGTR	1 cut(s)	52
Psp124BI	GAGCTC	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	23
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	10, 80, 181
SchI	GAGTC	1 cut(s)	137
SduI	GDGCHC	2 cut(s)	23, 30
SetI	ASST	2 cut(s)	23, 54
SfcI	CTRYAG	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SsiI	CCGC	3 cut(s)	43, 56, 132
SstI	GAGCTC	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	196
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	75
TauI	GCSGC	1 cut(s)	59
TspGWI	ACGGA	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.