Rh6CG313300

Mannosylglycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018161
Physical Location & Seq
Reverse (-)
49825914 .. 49829267
3354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG313300.1

Sequence Viewer

Length: 351 bp
ATGGCTATAGATCGGGCGAGCTTGGGGCTCCAATACCTGAGCGGTTCTACGTGGCGGCCTCCTACGCCAGTTTCGACGGACCTCCTCGCTCCTCCTCTAAAGCTGTTCGCGCCAAGTTCAACTCTGAGTCCGTTGTCATCCTCTACGCTCTCTATAAGCAGTGATAGTGTTTTGGCAACCTTGGTGAAAAGCAAAGAATTGATGGATCCATTTTACGACTTGTGTAAGCTGTTAGGTACTCAGCACCTGGATCTGAATTTCCGTGGAATCAATTACTATGCAGAGATATATTTAAATGGGTACAAAAAGACAAGAATTCAAGATTCAAGATCAACTGGAAAATGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_2 Glyco_hydro_2_C

Protein Analysis

116

Amino Acids

12.86

Weight (kDa)

9.3

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 42
AccII CGCG 1 cut(s) 110
AciI CCGC 2 cut(s) 42, 55
AclWI GGATC 3 cut(s) 200, 213, 258
AcsI RAATTY 2 cut(s) 256, 315
AfaI GTAC 2 cut(s) 238, 302
AgsI TTSAA 3 cut(s) 120, 320, 327
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 3 cut(s) 21, 103, 229
AluI AGCT 3 cut(s) 21, 103, 229
AlwI GGATC 3 cut(s) 200, 213, 258
AlwNI CAGNNNCTG 1 cut(s) 247
AoxI GGCC 1 cut(s) 56
ApoI RAATTY 2 cut(s) 256, 315
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 196
AvaII GGWCC 1 cut(s) 79
BamHI GGATCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 30
BccI CCATC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 29, 207
BmrFI CCNGG 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 38
BsaAI YACGTR 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 180, 262
Bse1I ACTGG 2 cut(s) 68, 340
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 2 cut(s) 180, 262
BseGI GGATG 1 cut(s) 137
BseMII CTCAG 3 cut(s) 29, 116, 254
BseNI ACTGG 2 cut(s) 68, 340
BseRI GAGGAG 3 cut(s) 74, 81, 84
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 1 cut(s) 58
BsnI GGCC 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 4 cut(s) 10, 205, 250, 329
BspACI CCGC 2 cut(s) 42, 55
BspANI GGCC 1 cut(s) 58
BspCNI CTCAG 3 cut(s) 30, 117, 253
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 2 cut(s) 29, 207
BspPI GGATC 3 cut(s) 200, 213, 258
BsrBI CCGCTC 1 cut(s) 42
BsrI ACTGG 2 cut(s) 68, 340
BssECI CCNNGG 2 cut(s) 180, 262
BssMI GATC 4 cut(s) 10, 205, 250, 329
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 3 cut(s) 38, 125, 240
BstDSI CCRYGG 1 cut(s) 262
BstF5I GGATG 1 cut(s) 137
BstFNI CGCG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 4 cut(s) 13, 208, 253, 332
BstMBI GATC 4 cut(s) 10, 205, 250, 329
BstMWI GCNNNNNNNGC 2 cut(s) 64, 109
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 6
BstUI CGCG 1 cut(s) 110
BstX2I RGATCY 2 cut(s) 205, 250
BstYI RGATCY 2 cut(s) 205, 250
BsuRI GGCC 1 cut(s) 58
BtgI CCRYGG 1 cut(s) 262
BtsCI GGATG 1 cut(s) 137
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 247
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 2 cut(s) 237, 301
CviJI RGCY 6 cut(s) 5, 21, 28, 58, 103, 229
CviKI_1 RGCY 6 cut(s) 5, 21, 28, 58, 103, 229
CviQI GTAC 2 cut(s) 237, 301
DdeI CTNAG 3 cut(s) 38, 125, 240
DpnI GATC 4 cut(s) 12, 207, 252, 331
DpnII GATC 4 cut(s) 10, 205, 250, 329
DraI TTTAAA 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 180
FaiI YATR 4 cut(s) 8, 155, 279, 289
Fnu4HI GCNGC 1 cut(s) 56
FokI GGATG 1 cut(s) 124
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 56
GlaI GCGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 56
HaeIII GGCC 1 cut(s) 58
HhaI GCGC 1 cut(s) 112
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 3 cut(s) 127, 267, 323
HphI GGTGA 1 cut(s) 196
Hpy188I TCNGA 2 cut(s) 126, 255
Hpy188III TCNNGA 2 cut(s) 320, 327
Hpy99I CGWCG 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 109
HpyF3I CTNAG 3 cut(s) 38, 125, 240
HpySE526I ACGT 1 cut(s) 50
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 4 cut(s) 10, 205, 250, 329
LmnI GCTCC 2 cut(s) 33, 94
LpnPI CCDG 5 cut(s) 50, 81, 233, 260, 321
MaeII ACGT 1 cut(s) 50
MalI GATC 4 cut(s) 12, 207, 252, 331
MbiI CCGCTC 1 cut(s) 42
MboI GATC 4 cut(s) 10, 205, 250, 329
MflI RGATCY 2 cut(s) 205, 250
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 4 cut(s) 197, 256, 271, 315
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 6 cut(s) 69, 92, 95, 102, 105, 151
MseI TTAA 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 64, 109
NdeII GATC 4 cut(s) 10, 205, 250, 329
NlaIV GGNNCC 2 cut(s) 29, 207
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PfeI GAWTC 2 cut(s) 267, 323
PkrI GCNGC 1 cut(s) 57
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
Ppu21I YACGTR 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 29, 207
PspPI GGNCC 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 247
PsuI RGATCY 2 cut(s) 205, 250
RsaI GTAC 2 cut(s) 238, 302
RsaNI GTAC 2 cut(s) 237, 301
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 4 cut(s) 10, 205, 250, 329
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 30
SetI ASST 9 cut(s) 23, 39, 53, 84, 105, 182, 231, 238, 249
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 79
SmiI ATTTAAAT 1 cut(s) 294
Sse9I AATT 4 cut(s) 197, 256, 271, 315
SsiI CCGC 2 cut(s) 42, 55
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 1 cut(s) 180
SwaI ATTTAAAT 1 cut(s) 294
TaiI ACGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 74
TasI AATT 4 cut(s) 197, 256, 271, 315
TauI GCSGC 1 cut(s) 58
TfiI GAWTC 2 cut(s) 267, 323
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 1 cut(s) 166
TspGWI ACGGA 3 cut(s) 92, 120, 251
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 2 cut(s) 256, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.