Rh2CG211400

Mannosylglycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0018161
Physical Location & Seq
Forward (+)
20717576 .. 20719008
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG211400.1

Sequence Viewer

Length: 552 bp
ATGATCTCTGGTGACCGAATCGAACCGCTTGTCACGAACGCCGTCGTGCCTCTTGAATTCTTGCTCCAACGACGCAAAGGCAATCTTCACTGCTATGATTGTCAGAGGCGAGCTCGGGGCTCCAATACCCTGAGCGGTTCTACGTGGCGGCCTCCTACGCCGGTTTCGACGGATCTCCTCGCTCCTCCTCTAAAGCCGTTCGCGCCAAGTTCAACTCTGAGTCCGCTCTCATCCTCTACGCTCTCTATAAGCAGTGATAGTGTTTTGGCAACCATGGTGAAATGCAAATTGATGGATCCGTTTTACGGCTTGTGTAAGCTGTCAGGTACTCAGCACCTAGATCTGAATTTCCGTGGAATCAATTACTATGCAGAGGTATATTTAAATGGGCACAAAAAGGTCCTTCCAAGAGGGATGTTTCGAAGGCATTCTCTAGATGTCACTGATATAGTACATGACAGTGAAAATATGCTTGCTGTTGTTGTTTACCCCAGATCATTGTGGTTATGTTTTATTTTGTTTAATGCGCTTATGGGAGGTTGTCCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_2 Glyco_hydro_2_C

Protein Analysis

183

Amino Acids

20.36

Weight (kDa)

9.13

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_2_N2 PF22666 107 - 163 3.2e-11 Glycosyl hydrolase 2 galactose-binding domain-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 135, 226
AccII CGCG 1 cut(s) 203
AciI CCGC 4 cut(s) 26, 135, 148, 224
AclWI GGATC 3 cut(s) 180, 290, 303
AcsI RAATTY 2 cut(s) 56, 346
AfaI GTAC 2 cut(s) 328, 453
AfiI CCNNNNNNNGG 1 cut(s) 305
AgsI TTSAA 2 cut(s) 56, 213
AluBI AGCT 2 cut(s) 113, 319
AluI AGCT 2 cut(s) 113, 319
Alw21I GWGCWC 1 cut(s) 115
AlwI GGATC 3 cut(s) 180, 290, 303
Ama87I CYCGRG 1 cut(s) 114
AoxI GGCC 1 cut(s) 149
ApoI RAATTY 2 cut(s) 56, 346
ArsI GACNNNNNNTTYG 2 cut(s) 15, 47
Asp700I GAANNNNTTC 1 cut(s) 427
AspLEI GCGC 2 cut(s) 205, 529
AspS9I GGNCC 1 cut(s) 400
AsuHPI GGTGA 2 cut(s) 23, 289
AsuII TTCGAA 1 cut(s) 421
AvaI CYCGRG 1 cut(s) 114
AvaII GGWCC 1 cut(s) 400
BaeGI GKGCMC 1 cut(s) 393
BamHI GGATCC 1 cut(s) 295
BanII GRGCYC 2 cut(s) 115, 122
Bbv12I GWGCWC 1 cut(s) 115
BccI CCATC 1 cut(s) 286
BceAI ACGGC 3 cut(s) 26, 181, 322
BfaI CTAG 2 cut(s) 338, 434
BglII AGATCT 1 cut(s) 340
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 2 cut(s) 121, 297
BplI GAGNNNNNCTC 2 cut(s) 97, 129
Bpu10I CCTNAGC 1 cut(s) 131
Bpu14I TTCGAA 1 cut(s) 421
BsaAI YACGTR 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 273, 352
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse118I RCCGGY 1 cut(s) 160
BseDI CCNNGG 2 cut(s) 273, 352
BseGI GGATG 2 cut(s) 230, 420
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMII CTCAG 3 cut(s) 122, 209, 344
BseRI GAGGAG 3 cut(s) 167, 174, 177
BseSI GKGCMC 1 cut(s) 393
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 115
BsiHKCI CYCGRG 1 cut(s) 114
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 305
BsmI GAATGC 1 cut(s) 427
BsnI GGCC 1 cut(s) 151
BsoBI CYCGRG 1 cut(s) 114
Bsp119I TTCGAA 1 cut(s) 421
Bsp1286I GDGCHC 3 cut(s) 115, 122, 393
Bsp143I GATC 5 cut(s) 3, 172, 295, 340, 494
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 4 cut(s) 26, 135, 148, 224
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 3 cut(s) 123, 210, 343
BspFNI CGCG 1 cut(s) 203
BspLI GGNNCC 2 cut(s) 121, 297
BspPI GGATC 3 cut(s) 180, 290, 303
BspT104I TTCGAA 1 cut(s) 421
BsrBI CCGCTC 2 cut(s) 135, 226
BsrFI RCCGGY 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 2 cut(s) 273, 352
BssMI GATC 5 cut(s) 3, 172, 295, 340, 494
BssT1I CCWWGG 1 cut(s) 273
Bst4CI ACNGT 1 cut(s) 461
BstBAI YACGTR 1 cut(s) 144
BstBI TTCGAA 1 cut(s) 421
BstC8I GCNNGC 2 cut(s) 111, 474
BstDEI CTNAG 3 cut(s) 131, 218, 330
BstDSI CCRYGG 2 cut(s) 273, 352
BstEII GGTNACC 1 cut(s) 11
BstF5I GGATG 2 cut(s) 230, 420
BstFNI CGCG 1 cut(s) 203
BstHHI GCGC 2 cut(s) 205, 529
BstKTI GATC 5 cut(s) 6, 175, 298, 343, 497
BstMBI GATC 5 cut(s) 3, 172, 295, 340, 494
BstMWI GCNNNNNNNGC 2 cut(s) 157, 202
BstPI GGTNACC 1 cut(s) 11
BstSLI GKGCMC 1 cut(s) 393
BstUI CGCG 1 cut(s) 203
BstX2I RGATCY 3 cut(s) 172, 295, 340
BstYI RGATCY 3 cut(s) 172, 295, 340
BsuRI GGCC 1 cut(s) 151
BtgI CCRYGG 2 cut(s) 273, 352
BtsCI GGATG 2 cut(s) 230, 420
BtsI GCAGTG 2 cut(s) 88, 259
BtsIMutI CAGTG 4 cut(s) 88, 259, 441, 466
Cac8I GCNNGC 2 cut(s) 111, 474
CfoI GCGC 2 cut(s) 205, 529
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 400
CseI GACGC 1 cut(s) 81
Csp6I GTAC 2 cut(s) 327, 452
CviAII CATG 2 cut(s) 274, 455
CviJI RGCY 6 cut(s) 113, 120, 151, 196, 309, 319
CviKI_1 RGCY 6 cut(s) 113, 120, 151, 196, 309, 319
CviQI GTAC 2 cut(s) 327, 452
DdeI CTNAG 3 cut(s) 131, 218, 330
DpnI GATC 5 cut(s) 5, 174, 297, 342, 496
DpnII GATC 5 cut(s) 3, 172, 295, 340, 494
DraI TTTAAA 1 cut(s) 384
Ecl136II GAGCTC 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 2 cut(s) 115, 122
Eco47I GGWCC 1 cut(s) 400
Eco53kI GAGCTC 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 114
Eco91I GGTNACC 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 400
EcoO65I GGTNACC 1 cut(s) 11
EcoRI GAATTC 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 2 cut(s) 115, 122
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 2 cut(s) 277, 458
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FatI CATG 2 cut(s) 273, 454
Fnu4HI GCNGC 1 cut(s) 149
FokI GGATG 2 cut(s) 217, 427
FriOI GRGCYC 2 cut(s) 115, 122
Fsp4HI GCNGC 1 cut(s) 149
FspBI CTAG 2 cut(s) 338, 434
GlaI GCGC 2 cut(s) 204, 528
GluI GCNGC 1 cut(s) 149
HaeIII GGCC 1 cut(s) 151
HapII CCGG 1 cut(s) 161
HgaI GACGC 1 cut(s) 81
HhaI GCGC 2 cut(s) 205, 529
Hin1II CATG 2 cut(s) 277, 458
Hin6I GCGC 2 cut(s) 203, 527
HinP1I GCGC 2 cut(s) 203, 527
HinfI GANTC 3 cut(s) 18, 220, 357
HpaII CCGG 1 cut(s) 161
HphI GGTGA 2 cut(s) 23, 289
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 3 cut(s) 105, 219, 345
Hpy188III TCNNGA 3 cut(s) 34, 53, 434
Hpy8I GTNNAC 1 cut(s) 487
Hpy99I CGWCG 3 cut(s) 47, 75, 172
HpyAV CCTTC 2 cut(s) 413, 417
HpyCH4III ACNGT 1 cut(s) 461
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 2 cut(s) 285, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 202
HpyF3I CTNAG 3 cut(s) 131, 218, 330
HpySE526I ACGT 1 cut(s) 143
Hsp92II CATG 2 cut(s) 277, 458
HspAI GCGC 2 cut(s) 203, 527
Kzo9I GATC 5 cut(s) 3, 172, 295, 340, 494
LmnI GCTCC 3 cut(s) 69, 125, 187
LpnPI CCDG 4 cut(s) 143, 174, 309, 505
MaeI CTAG 2 cut(s) 338, 434
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 3 cut(s) 11, 31, 439
MalI GATC 5 cut(s) 5, 174, 297, 342, 496
MbiI CCGCTC 2 cut(s) 135, 226
MboI GATC 5 cut(s) 3, 172, 295, 340, 494
MboII GAAGA 1 cut(s) 77
MflI RGATCY 3 cut(s) 172, 295, 340
MhlI GDGCHC 3 cut(s) 115, 122, 393
MluCI AATT 5 cut(s) 56, 287, 346, 361, 547
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 427
MseI TTAA 2 cut(s) 383, 522
MslI CAYNNNNRTG 2 cut(s) 93, 459
MspI CCGG 1 cut(s) 161
Mva1269I GAATGC 1 cut(s) 427
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 2 cut(s) 157, 202
NcoI CCATGG 1 cut(s) 273
NdeII GATC 5 cut(s) 3, 172, 295, 340, 494
NlaIII CATG 2 cut(s) 277, 458
NlaIV GGNNCC 2 cut(s) 121, 297
NmuCI GTSAC 3 cut(s) 11, 31, 439
NspV TTCGAA 1 cut(s) 421
PcsI WCGNNNNNNNCGW 1 cut(s) 164
PctI GAATGC 1 cut(s) 427
PdmI GAANNNNTTC 1 cut(s) 427
PfeI GAWTC 2 cut(s) 18, 357
PkrI GCNGC 1 cut(s) 150
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
Ppu21I YACGTR 1 cut(s) 144
PpuMI RGGWCCY 1 cut(s) 400
Psp124BI GAGCTC 1 cut(s) 115
Psp5II RGGWCCY 1 cut(s) 400
PspEI GGTNACC 1 cut(s) 11
PspN4I GGNNCC 2 cut(s) 121, 297
PspPI GGNCC 1 cut(s) 400
PspPPI RGGWCCY 1 cut(s) 400
PsuI RGATCY 3 cut(s) 172, 295, 340
RsaI GTAC 2 cut(s) 328, 453
RsaNI GTAC 2 cut(s) 327, 452
RseI CAYNNNNRTG 2 cut(s) 93, 459
SacI GAGCTC 1 cut(s) 115
SaqAI TTAA 2 cut(s) 383, 522
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 5 cut(s) 3, 172, 295, 340, 494
Sau96I GGNCC 1 cut(s) 400
SchI GAGTC 1 cut(s) 229
SduI GDGCHC 3 cut(s) 115, 122, 393
SetI ASST 8 cut(s) 115, 146, 321, 328, 339, 378, 402, 541
SfuI TTCGAA 1 cut(s) 421
SinI GGWCC 1 cut(s) 400
SmiI ATTTAAAT 1 cut(s) 384
SmiMI CAYNNNNRTG 2 cut(s) 93, 459
Sse9I AATT 5 cut(s) 56, 287, 346, 361, 547
SsiI CCGC 4 cut(s) 26, 135, 148, 224
SspMI CTAG 2 cut(s) 338, 434
SstI GAGCTC 1 cut(s) 115
StyI CCWWGG 1 cut(s) 273
SwaI ATTTAAAT 1 cut(s) 384
TaaI ACNGT 1 cut(s) 461
TaiI ACGT 1 cut(s) 146
TaqI TCGA 3 cut(s) 21, 167, 421
TaqII GACCGA 1 cut(s) 30
TasI AATT 5 cut(s) 56, 287, 346, 361, 547
TatI WGTACW 1 cut(s) 451
TauI GCSGC 1 cut(s) 151
TfiI GAWTC 2 cut(s) 18, 357
Tru1I TTAA 2 cut(s) 383, 522
Tru9I TTAA 2 cut(s) 383, 522
TscAI CASTG 4 cut(s) 95, 259, 448, 466
TseFI GTSAC 3 cut(s) 11, 31, 439
Tsp45I GTSAC 3 cut(s) 11, 31, 439
TspGWI ACGGA 3 cut(s) 185, 288, 341
TspRI CASTG 4 cut(s) 95, 259, 448, 466
VpaK11BI GGWCC 1 cut(s) 400
XapI RAATTY 2 cut(s) 56, 346
XbaI TCTAGA 1 cut(s) 433
XmnI GAANNNNTTC 1 cut(s) 427
XspI CTAG 2 cut(s) 338, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.