Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018161

Physical Location & Seq

Genomic Coordinates Reverse (-)

13873118 .. 13874588

Gene Structure 1471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36977

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGGCTATAGATCAGGCGAGCTCGGGGCTCCAATACCCTGAGTGGTTCTACATGGCGGCCTCCTATGCCAGTTTCGACGGATCTCCTGGCTCCTCCTCTAAATCCGTTCGCGCCAAGTTCAACTCTGAGTCCGCTCTCATCCTCTACGCTCTCTATAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006869 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0010033 GO:0010876 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033218 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP Kelch_3 Kelch_4 Kelch_5 Kelch_6

Protein Analysis

54

Amino Acids

5.92

Weight (kDa)

5.97

Isoelectric Point (pI)

80.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018161)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0109091 RchiOBHm_Chr4g0393251 RchiOBHm_Chr4g0397481 RchiOBHm_Chr5g0019041
rosa_laevigata	RLG00000030795 RLG00000033474
rosa_samantha	Rh2AG380100 Rh2CG211400 Rh6BG206900 Rh6CG304800 Rh6CG313300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	134
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	56, 132
AclWI	GGATC	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
Alw21I	GWGCWC	1 cut(s)	23
AlwI	GGATC	1 cut(s)	88
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	113
AvaI	CYCGRG	1 cut(s)	22
BanII	GRGCYC	2 cut(s)	23, 30
Bbv12I	GWGCWC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	87
BmeT110I	CYCGRG	1 cut(s)	22
BmiI	GGNNCC	2 cut(s)	29, 91
BmrFI	CCNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	138
BseMII	CTCAG	2 cut(s)	30, 117
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	2 cut(s)	82, 85
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	22
BsnI	GGCC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	23, 30
Bsp143I	GATC	2 cut(s)	10, 80
BspACI	CCGC	2 cut(s)	56, 132
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	2 cut(s)	31, 118
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	29, 91
BspPI	GGATC	1 cut(s)	88
BsrBI	CCGCTC	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	10, 80
Bst2UI	CCWGG	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	2 cut(s)	39, 126
BstF5I	GGATG	1 cut(s)	138
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	2 cut(s)	13, 83
BstMBI	GATC	2 cut(s)	10, 80
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	1 cut(s)	113
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	5 cut(s)	5, 21, 28, 59, 90
CviKI_1	RGCY	5 cut(s)	5, 21, 28, 59, 90
DdeI	CTNAG	2 cut(s)	39, 126
DpnI	GATC	2 cut(s)	12, 82
DpnII	GATC	2 cut(s)	10, 80
Ecl136II	GAGCTC	1 cut(s)	21
Eco24I	GRGCYC	2 cut(s)	23, 30
Eco53kI	GAGCTC	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	85
EcoT38I	GRGCYC	2 cut(s)	23, 30
FaeI	CATG	1 cut(s)	55
FaiI	YATR	4 cut(s)	8, 53, 66, 156
FatI	CATG	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	2 cut(s)	23, 30
Fsp4HI	GCNGC	1 cut(s)	57
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	55
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	2 cut(s)	39, 126
Hsp92II	CATG	1 cut(s)	55
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	10, 80
LmnI	GCTCC	2 cut(s)	33, 95
LpnPI	CCDG	4 cut(s)	51, 72, 82, 99
MalI	GATC	2 cut(s)	12, 82
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	2 cut(s)	10, 80
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	2 cut(s)	23, 30
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	4 cut(s)	70, 103, 106, 152
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	2 cut(s)	10, 80
NlaIII	CATG	1 cut(s)	55
NlaIV	GGNNCC	2 cut(s)	29, 91
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Psp124BI	GAGCTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	29, 91
PsuI	RGATCY	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	23
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	2 cut(s)	10, 80
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	2 cut(s)	23, 30
SetI	ASST	1 cut(s)	23
SfcI	CTRYAG	1 cut(s)	6
SsiI	CCGC	2 cut(s)	56, 132
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	85
TaqI	TCGA	1 cut(s)	75
TauI	GCSGC	1 cut(s)	59
TspGWI	ACGGA	2 cut(s)	93, 94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.