Rh6BG206900

Mannosylglycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0018161
Physical Location & Seq
Reverse (-)
38980442 .. 38981695
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG206900.1

Sequence Viewer

Length: 384 bp
ATGGATCTCCTCGCTCCTCCTCTAAAGCCGTTCGCGCCAAGTTCAACTCTTAGTCCGCTCTCATCCTCTACGCTCTCTATAAGCAGTGATAGTGTTTTGGCAACCATGGTGAAAAGCAAATTGATGGATCCGTTTTACGGCTTGTTTAAGCTGGCCGGTACTCAGCACCTAGATCTGAATTTCTGTGGAATCAATTATTATGCAGAGGTATATTTAAATGGGCACAAAAAGGTCCTTCCAAGAGGGATGGTTCGAAGTCATTCTCTAGATGTCACTGATATAGTACATGACAGTGAAAATATGCTTGCTGTTGTTGTTTACCCCAGATCATTGTGGTTATGTTTTATTTTGTTTAATGCGCTTATGGGAGGTTGTCCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_2 Glyco_hydro_2_C

Protein Analysis

127

Amino Acids

13.95

Weight (kDa)

6.88

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_2_N2 PF22666 51 - 107 7.1e-09 Glycosyl hydrolase 2 galactose-binding domain-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 58
AccII CGCG 1 cut(s) 35
AciI CCGC 1 cut(s) 56
AclWI GGATC 3 cut(s) 12, 122, 135
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 1 cut(s) 178
AfaI GTAC 2 cut(s) 160, 285
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 1 cut(s) 45
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
AlwI GGATC 3 cut(s) 12, 122, 135
AoxI GGCC 1 cut(s) 153
ApoI RAATTY 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 259
AspLEI GCGC 2 cut(s) 37, 361
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 121
AsuII TTCGAA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 232
BaeGI GKGCMC 1 cut(s) 225
BamHI GGATCC 1 cut(s) 127
BccI CCATC 2 cut(s) 118, 241
BceAI ACGGC 2 cut(s) 13, 154
BfaI CTAG 2 cut(s) 170, 266
BglII AGATCT 1 cut(s) 172
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse118I RCCGGY 1 cut(s) 155
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 62, 252
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 176
BseRI GAGGAG 2 cut(s) 6, 9
BseSI GKGCMC 1 cut(s) 225
Bsh1236I CGCG 1 cut(s) 35
BshFI GGCC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 137
BsnI GGCC 1 cut(s) 155
Bsp119I TTCGAA 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 4 cut(s) 4, 127, 172, 326
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 175
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 3 cut(s) 12, 122, 135
BspT104I TTCGAA 1 cut(s) 253
BsrBI CCGCTC 1 cut(s) 58
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 4 cut(s) 4, 127, 172, 326
BssT1I CCWWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 153, 306
BstDEI CTNAG 2 cut(s) 50, 162
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 2 cut(s) 62, 252
BstFNI CGCG 1 cut(s) 35
BstHHI GCGC 2 cut(s) 37, 361
BstKTI GATC 4 cut(s) 7, 130, 175, 329
BstMBI GATC 4 cut(s) 4, 127, 172, 326
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstSLI GKGCMC 1 cut(s) 225
BstUI CGCG 1 cut(s) 35
BstX2I RGATCY 3 cut(s) 4, 127, 172
BstYI RGATCY 3 cut(s) 4, 127, 172
BsuRI GGCC 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 62, 252
BtsI GCAGTG 1 cut(s) 91
BtsIMutI CAGTG 3 cut(s) 91, 273, 298
Cac8I GCNNGC 2 cut(s) 153, 306
CfoI GCGC 2 cut(s) 37, 361
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 2 cut(s) 159, 284
CviAII CATG 2 cut(s) 106, 287
CviJI RGCY 4 cut(s) 28, 141, 151, 155
CviKI_1 RGCY 4 cut(s) 28, 141, 151, 155
CviQI GTAC 2 cut(s) 159, 284
DdeI CTNAG 2 cut(s) 50, 162
DpnI GATC 4 cut(s) 6, 129, 174, 328
DpnII GATC 4 cut(s) 4, 127, 172, 326
DraI TTTAAA 1 cut(s) 216
EaeI YGGCCR 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 2 cut(s) 109, 290
FaiI YATR 9 cut(s) 80, 107, 201, 211, 281, 288, 302, 340, 365
FatI CATG 2 cut(s) 105, 286
FokI GGATG 2 cut(s) 49, 259
FspBI CTAG 2 cut(s) 170, 266
GlaI GCGC 2 cut(s) 36, 360
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 156
HhaI GCGC 2 cut(s) 37, 361
Hin1II CATG 2 cut(s) 109, 290
Hin6I GCGC 2 cut(s) 35, 359
HinP1I GCGC 2 cut(s) 35, 359
HinfI GANTC 1 cut(s) 189
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 1 cut(s) 245
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4V TGCA 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 2 cut(s) 50, 162
Hsp92II CATG 2 cut(s) 109, 290
HspAI GCGC 2 cut(s) 35, 359
Kzo9I GATC 4 cut(s) 4, 127, 172, 326
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 3 cut(s) 137, 169, 337
MaeI CTAG 2 cut(s) 170, 266
MaeIII GTNAC 1 cut(s) 271
MalI GATC 4 cut(s) 6, 129, 174, 328
MbiI CCGCTC 1 cut(s) 58
MboI GATC 4 cut(s) 4, 127, 172, 326
MflI RGATCY 3 cut(s) 4, 127, 172
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 4 cut(s) 119, 178, 193, 379
MnlI CCTC 7 cut(s) 20, 27, 30, 76, 199, 236, 362
MroXI GAANNNNTTC 1 cut(s) 259
MseI TTAA 3 cut(s) 147, 215, 354
MslI CAYNNNNRTG 1 cut(s) 291
MspI CCGG 1 cut(s) 156
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 34
NcoI CCATGG 1 cut(s) 105
NdeII GATC 4 cut(s) 4, 127, 172, 326
NlaIII CATG 2 cut(s) 109, 290
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 271
NspV TTCGAA 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 189
PpuMI RGGWCCY 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 232
PspPPI RGGWCCY 1 cut(s) 232
PsuI RGATCY 3 cut(s) 4, 127, 172
RsaI GTAC 2 cut(s) 160, 285
RsaNI GTAC 2 cut(s) 159, 284
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 3 cut(s) 147, 215, 354
Sau3AI GATC 4 cut(s) 4, 127, 172, 326
Sau96I GGNCC 1 cut(s) 232
SduI GDGCHC 1 cut(s) 225
SetI ASST 5 cut(s) 153, 171, 210, 234, 373
SfuI TTCGAA 1 cut(s) 253
SinI GGWCC 1 cut(s) 232
SmiI ATTTAAAT 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 291
Sse9I AATT 4 cut(s) 119, 178, 193, 379
SsiI CCGC 1 cut(s) 56
SspMI CTAG 2 cut(s) 170, 266
StyI CCWWGG 1 cut(s) 105
SwaI ATTTAAAT 1 cut(s) 216
TaaI ACNGT 1 cut(s) 293
TaqI TCGA 1 cut(s) 253
TasI AATT 4 cut(s) 119, 178, 193, 379
TatI WGTACW 1 cut(s) 283
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 3 cut(s) 147, 215, 354
Tru9I TTAA 3 cut(s) 147, 215, 354
TscAI CASTG 3 cut(s) 91, 280, 298
TseFI GTSAC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 271
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 3 cut(s) 91, 280, 298
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 1 cut(s) 178
XbaI TCTAGA 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 259
XspI CTAG 2 cut(s) 170, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.