RchiOBHm_Chr2g0111371

RNA-binding protein 12-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
23016571 .. 23017255
685 bp
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UTR
Exon/CDS
Intron
PRQ48496

Sequence Viewer

Length: 432 bp
ATGGCAGGTTTCCAGCATTGTTTCCTGCTTTCCATGGTGGTAGCGGCATTGTGCTTGTCTAGCATTGATACGAGCTTCGCAGCTCGACACCTTCTGCAGGCTCCAGCATTACCACAGCCTACAATTCCGTCTCTTCCCAAGGTTACAATGCCTCCACTGCCTTCCTTGCCAACAGGACTGCCTCAACCCACACTGCCAACATTTCCAACCAACCCCATCCCACCTCTGCCGAAAGCCACATTGCCACCATTGCCAAGCACCCAAATCCCATCTCTGCCAAACCCTACCTTGCCAACAATTCCAAGCTCTGTTCCCAAGATGACTCTTCCTCCACTTCCAGCCACTCCATTGCCCACCATCCCAACCAAGATTCCTTCATTCCCCACCATTCCAACCACAATTCCAACTGTTCCTTCTCCTCCCTCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

14.9

Weight (kDa)

9.7

Isoelectric Point (pI)

71.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 97
AjuI GAANNNNNNNTTGG 2 cut(s) 397, 429
AluBI AGCT 3 cut(s) 75, 83, 306
AluI AGCT 3 cut(s) 75, 83, 306
Alw26I GTCTC 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 92
BccI CCATC 3 cut(s) 224, 277, 365
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 95
BisI GCNGC 2 cut(s) 45, 81
BlsI GCNGC 2 cut(s) 46, 82
BmiI GGNNCC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 33, 138
BsaXI ACNNNNNCTCC 4 cut(s) 136, 166, 313, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse3DI GCAATG 3 cut(s) 239, 248, 347
BseDI CCNNGG 2 cut(s) 33, 138
BseGI GGATG 2 cut(s) 216, 357
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 3 cut(s) 239, 248, 347
BseRI GAGGAG 1 cut(s) 408
BseXI GCAGC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 135
BsmBI CGTCTC 1 cut(s) 135
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 99
BsrDI GCAATG 3 cut(s) 239, 248, 347
BssECI CCNNGG 2 cut(s) 33, 138
BssT1I CCWWGG 2 cut(s) 33, 138
Bst4CI ACNGT 1 cut(s) 409
Bst6I CTCTTC 2 cut(s) 138, 330
BstC8I GCNNGC 1 cut(s) 99
BstDSI CCRYGG 1 cut(s) 33
BstENI CCTNNNNNAGG 1 cut(s) 95
BstF5I GGATG 2 cut(s) 216, 357
BstMAI GTCTC 1 cut(s) 135
BstMWI GCNNNNNNNGC 4 cut(s) 60, 157, 166, 250
BstSFI CTRYAG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 92
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 2 cut(s) 216, 357
BtsI GCAGTG 2 cut(s) 155, 191
BtsIMutI CAGTG 2 cut(s) 155, 191
Cac8I GCNNGC 1 cut(s) 99
CviAII CATG 1 cut(s) 34
CviJI RGCY 7 cut(s) 75, 83, 101, 118, 236, 306, 341
CviKI_1 RGCY 7 cut(s) 75, 83, 101, 118, 236, 306, 341
Eam1104I CTCTTC 2 cut(s) 138, 330
EarI CTCTTC 2 cut(s) 138, 330
Eco130I CCWWGG 2 cut(s) 33, 138
EcoNI CCTNNNNNAGG 1 cut(s) 95
EcoT14I CCWWGG 2 cut(s) 33, 138
ErhI CCWWGG 2 cut(s) 33, 138
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 1 cut(s) 37
FaiI YATR 1 cut(s) 35
FatI CATG 1 cut(s) 33
Fnu4HI GCNGC 2 cut(s) 45, 81
FokI GGATG 2 cut(s) 203, 344
Fsp4HI GCNGC 2 cut(s) 45, 81
FspBI CTAG 1 cut(s) 60
GluI GCNGC 2 cut(s) 45, 81
GsuI CTGGAG 1 cut(s) 87
Hin1II CATG 1 cut(s) 37
HinfI GANTC 2 cut(s) 322, 370
HpyAV CCTTC 4 cut(s) 101, 171, 384, 423
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 157, 166, 250
Hsp92II CATG 1 cut(s) 37
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 6 cut(s) 26, 38, 83, 117, 159, 351
Lsp1109I GCAGC 1 cut(s) 92
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 142
MboII GAAGA 2 cut(s) 125, 317
MluCI AATT 4 cut(s) 123, 297, 399, 427
MlyI GAGTC 1 cut(s) 316
MmeI TCCRAC 3 cut(s) 230, 416, 428
MnlI CCTC 5 cut(s) 162, 192, 234, 339, 429
MseI TTAA 1 cut(s) 430
MwoI GCNNNNNNNGC 4 cut(s) 60, 157, 166, 250
NcoI CCATGG 1 cut(s) 33
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 370
PkrI GCNGC 2 cut(s) 46, 82
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 102
PstI CTGCAG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 430
SatI GCNGC 2 cut(s) 45, 81
SchI GAGTC 1 cut(s) 316
SetI ASST 8 cut(s) 10, 77, 85, 93, 144, 226, 290, 308
SfcI CTRYAG 1 cut(s) 95
Sse9I AATT 4 cut(s) 123, 297, 399, 427
SsiI CCGC 1 cut(s) 44
SspMI CTAG 1 cut(s) 60
StyI CCWWGG 2 cut(s) 33, 138
TaaI ACNGT 1 cut(s) 409
TaqI TCGA 1 cut(s) 85
TasI AATT 4 cut(s) 123, 297, 399, 427
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 370
Tru1I TTAA 1 cut(s) 430
Tru9I TTAA 1 cut(s) 430
TscAI CASTG 2 cut(s) 162, 198
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 366
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 2 cut(s) 162, 198
XagI CCTNNNNNAGG 1 cut(s) 95
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.