Rh1BG276800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0008166
Physical Location & Seq
Forward (+)
41329054 .. 41329852
799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG276800.1

Sequence Viewer

Length: 369 bp
ATGGTAGCAGCATTGTGTTTGTCAAGCATTGACATGAGCTTTGGCGCCAGGCACCTGTTGCAGACATCAATTCCATCGATTCCGATTCCCAAGGGTGCATTGCCTCCACTGCCTTCCACACTGCCTATGCCAACTTCACTGCCACAATTGCCAACATTGCCAAAACCCACAACACAAATCCCATCTCTGCCAAGCACCCAAATCCCATCTCTACCAAATCCAACAATGCCAAACCTTCCCACAGCTCCTAAGTTCACTCTACCTCCACTTCCAACTACATTCCCCACCATCCCCACTACGATCCCTCCACTTCCCACCTTTCCAACCACAATTCCAACAGTTCCATCCCTCTCACCTCCATCGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

12.75

Weight (kDa)

9.79

Isoelectric Point (pI)

71.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 44, 51
AclWI GGATC 1 cut(s) 295
AcyI GRCGYC 1 cut(s) 45
AjnI CCWGG 1 cut(s) 47
AluBI AGCT 2 cut(s) 39, 245
AluI AGCT 2 cut(s) 39, 245
AlwI GGATC 1 cut(s) 295
ApeKI GCWGC 1 cut(s) 8
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AspLEI GCGC 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 345
BanI GGYRCC 2 cut(s) 44, 51
BbvI GCAGC 1 cut(s) 20
BccI CCATC 6 cut(s) 82, 190, 214, 296, 352, 367
BciT130I CCWGG 1 cut(s) 49
BfoI RGCGCY 1 cut(s) 48
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 49
BmiI GGNNCC 2 cut(s) 46, 53
BmrFI CCNGG 1 cut(s) 49
Bsa29I ATCGAT 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 90
BsaXI ACNNNNNCTCC 4 cut(s) 247, 277, 289, 319
Bse3DI GCAATG 2 cut(s) 98, 155
BseBI CCWGG 1 cut(s) 49
BseCI ATCGAT 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 2 cut(s) 288, 344
BseMI GCAATG 2 cut(s) 98, 155
BseXI GCAGC 1 cut(s) 20
BshNI GGYRCC 2 cut(s) 44, 51
BshVI ATCGAT 1 cut(s) 77
Bsp143I GATC 1 cut(s) 300
BspDI ATCGAT 1 cut(s) 77
BspLI GGNNCC 2 cut(s) 46, 53
BspPI GGATC 1 cut(s) 295
BspT107I GGYRCC 2 cut(s) 44, 51
BsrDI GCAATG 2 cut(s) 98, 155
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 1 cut(s) 300
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 340
BstACI GRCGYC 1 cut(s) 45
BstAPI GCANNNNNTGC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 288, 344
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 1 cut(s) 303
BstMBI GATC 1 cut(s) 300
BstMWI GCNNNNNNNGC 4 cut(s) 58, 109, 148, 157
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 20
Bsu15I ATCGAT 1 cut(s) 77
BsuTUI ATCGAT 1 cut(s) 77
BtsCI GGATG 2 cut(s) 288, 344
BtsI GCAGTG 3 cut(s) 107, 119, 137
BtsIMutI CAGTG 3 cut(s) 107, 119, 137
CfoI GCGC 1 cut(s) 47
ClaI ATCGAT 1 cut(s) 77
CviAII CATG 1 cut(s) 34
CviJI RGCY 2 cut(s) 39, 245
CviKI_1 RGCY 2 cut(s) 39, 245
DdeI CTNAG 1 cut(s) 249
DinI GGCGCC 1 cut(s) 46
DpnI GATC 1 cut(s) 302
DpnII GATC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 47
EcoT14I CCWWGG 1 cut(s) 90
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 1 cut(s) 37
FaiI YATR 2 cut(s) 35, 128
FatI CATG 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 2 cut(s) 275, 331
Fsp4HI GCNGC 1 cut(s) 9
GlaI GCGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 9
HaeII RGCGCY 1 cut(s) 48
HhaI GCGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HinfI GANTC 2 cut(s) 79, 85
HphI GGTGA 1 cut(s) 345
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 1 cut(s) 84
Hpy8I GTNNAC 1 cut(s) 255
HpyAV CCTTC 2 cut(s) 123, 245
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4V TGCA 2 cut(s) 61, 98
HpyF10VI GCNNNNNNNGC 4 cut(s) 58, 109, 148, 157
HpyF3I CTNAG 1 cut(s) 249
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 1 cut(s) 45
KasI GGCGCC 1 cut(s) 44
Kzo9I GATC 1 cut(s) 300
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 3 cut(s) 34, 61, 68
Lsp1109I GCAGC 1 cut(s) 20
MalI GATC 1 cut(s) 302
MboI GATC 1 cut(s) 300
MfeI CAATTG 1 cut(s) 146
MluCI AATT 4 cut(s) 69, 146, 330, 364
Mly113I GGCGCC 1 cut(s) 45
MmeI TCCRAC 4 cut(s) 245, 296, 347, 359
MnlI CCTC 5 cut(s) 114, 273, 315, 359, 366
MseI TTAA 1 cut(s) 367
MslI CAYNNNNRTG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 49
MunI CAATTG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 49
MwoI GCNNNNNNNGC 4 cut(s) 58, 109, 148, 157
NarI GGCGCC 1 cut(s) 45
NdeII GATC 1 cut(s) 300
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 2 cut(s) 46, 53
PfeI GAWTC 2 cut(s) 79, 85
PkrI GCNGC 1 cut(s) 10
PluTI GGCGCC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 46, 53
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 367
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 1 cut(s) 300
ScrFI CCNGG 1 cut(s) 49
SetI ASST 7 cut(s) 41, 57, 237, 247, 265, 320, 358
SfoI GGCGCC 1 cut(s) 46
SgeI CNNG 7 cut(s) 36, 46, 60, 61, 67, 103, 204
SmiMI CAYNNNNRTG 1 cut(s) 32
Sse9I AATT 4 cut(s) 69, 146, 330, 364
SspDI GGCGCC 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 47
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 340
TaqI TCGA 2 cut(s) 77, 362
TasI AATT 4 cut(s) 69, 146, 330, 364
TfiI GAWTC 2 cut(s) 79, 85
Tru1I TTAA 1 cut(s) 367
Tru9I TTAA 1 cut(s) 367
TscAI CASTG 3 cut(s) 114, 126, 144
TseI GCWGC 1 cut(s) 8
TspRI CASTG 3 cut(s) 114, 126, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.