Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000075.1

Orthogroup ID

OG0008166

Physical Location & Seq

Genomic Coordinates Forward (+)

29426 .. 29791

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000075.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atggtagcagcattgtgtttgtcaagcatcgatataagcctcgccgcccggcttcttttgcagactacaattccagccccagcattgcctactttgcctccactgccttccttgccgacgttacctaaacccaccttgccaacctttccaactacctctctcccaactttgcctaaacccacattgccaccactttcaagcactcaaattccatctttgccaaatccgacattgcccaccattccgactgctcccaaggtcactcttcccccacttccagctactccatttcccaccttccccactacattaccttcgatccccaccatcccaaccattccttccctctctcctctatcaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

12.48

Weight (kDa)

9.79

Isoelectric Point (pI)

65.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008166)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0362851 RchiOBHm_Chr2g0111371
rosa_laevigata	RLG00000017890 RLG00000017892
rosa_multiflora	Rmu_ssc0000075.1_g000005 Rmu_ssc0000075.1_g000007
rosa_roxburghii	Rroxscaffold_2G00132440 Rroxscaffold_2G00132450 Rroxscaffold_4G00293440 Rroxscaffold_4G00293460
rosa_rugosa	Rorug02G0173200 Rorug02G0173300
rosa_samantha	Rh1BG276800 Rh1CG291100 Rh2AG226400 Rh2AG226500 Rh2BG238100 Rh2BG238200 Rh2CG229500 Rh2CG229600 Rh2DG233800 Rh2DG233900
rosa_wichuraiana	Rw1G027550 Rw1G027780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	198
AjuI	GAANNNNNNNTTGG	2 cut(s)	325, 357
AluBI	AGCT	1 cut(s)	281
AluI	AGCT	1 cut(s)	281
AlwI	GGATC	1 cut(s)	313
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	207
AsuC2I	CCSGG	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	2 cut(s)	220, 335
BcnI	CCSGG	1 cut(s)	49
BisI	GCNGC	2 cut(s)	9, 45
BlsI	GCNGC	2 cut(s)	10, 46
Bme1390I	CCNGG	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	49
Bsa29I	ATCGAT	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bse3DI	GCAATG	3 cut(s)	83, 182, 230
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	327
BseMI	GCAATG	3 cut(s)	83, 182, 230
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	20
BseYI	CCCAGC	1 cut(s)	79
BshVI	ATCGAT	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	1 cut(s)	45
BspDI	ATCGAT	1 cut(s)	30
BspPI	GGATC	1 cut(s)	313
BsrDI	GCAATG	3 cut(s)	83, 182, 230
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 94, 103, 112
BstSCI	CCNGG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	20
Bsu15I	ATCGAT	1 cut(s)	30
BsuTUI	ATCGAT	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	101
ClaI	ATCGAT	1 cut(s)	30
CviJI	RGCY	4 cut(s)	39, 52, 77, 281
CviKI_1	RGCY	4 cut(s)	39, 52, 77, 281
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaiI	YATR	1 cut(s)	35
Fnu4HI	GCNGC	2 cut(s)	9, 45
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	9, 45
GluI	GCNGC	2 cut(s)	9, 45
GsaI	CCCAGC	1 cut(s)	83
HapII	CCGG	1 cut(s)	49
HpaII	CCGG	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	228, 246
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	4 cut(s)	117, 307, 324, 351
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	1 cut(s)	61
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 94, 103, 112
HpySE526I	ACGT	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	4 cut(s)	62, 87, 93, 291
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	1 cut(s)	36
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	2 cut(s)	120, 259
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	1 cut(s)	257
MluCI	AATT	2 cut(s)	69, 207
MmeI	TCCRAC	3 cut(s)	173, 251, 269
MnlI	CCTC	5 cut(s)	50, 108, 166, 356, 363
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	4 cut(s)	58, 94, 103, 112
NciI	CCSGG	1 cut(s)	49
NdeII	GATC	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	10, 46
PspFI	CCCAGC	1 cut(s)	79
SatI	GCNGC	2 cut(s)	9, 45
Sau3AI	GATC	1 cut(s)	318
ScrFI	CCNGG	1 cut(s)	49
SetI	ASST	9 cut(s)	122, 127, 137, 146, 158, 261, 283, 299, 316
SfaNI	GCATC	1 cut(s)	36
Sse9I	AATT	2 cut(s)	69, 207
SsiI	CCGC	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	255
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	2 cut(s)	30, 317
TasI	AATT	2 cut(s)	69, 207
TauI	GCSGC	1 cut(s)	47
TscAI	CASTG	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	259
TspRI	CASTG	1 cut(s)	108
XapI	RAATTY	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.