Rroxscaffold_4G00293440

Testis-expressed sequence 10 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0008166
Physical Location & Seq
Reverse (-)
13727873 .. 13729778
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00293440.1

Sequence Viewer

Length: 399 bp
ATGGCAGGCCTCAAGCATTGTTCCCTATTATCTATCATGGTAGCTGCATTGTGTTTGTCGAGCATTGACACGAGCTTTGGCGCCAGGCACCTGTTGCAGACATCAGTTCCATTGATTCCGGTTCCCAAGGGTGCAGTGCCTCCACTGCCTATGCCAACTCCTCTGCCACCATTGCCACCACTGCCAAAACCCACAACACAAATGCCACCTCTGCCAAGCACCCAAATCCCATCTCTTCCAAATCCAACATTGCCAAACCTTCCCACTGCTCCCAAGTTCACTCTACCTCCACTTCCGGCCACTACATTCCCCAACTTCCCCACTACAATCCCTTCACTTCCCAACATTCCGATCACAATTCCATCAATTCCTTTTCTCTCACCTCCTCCGTCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ipi1_N

Protein Analysis

132

Amino Acids

13.8

Weight (kDa)

9.7

Isoelectric Point (pI)

69.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 80, 87
AcoI YGGCCR 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 81
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 2 cut(s) 44, 75
AluI AGCT 2 cut(s) 44, 75
AoxI GGCC 2 cut(s) 7, 297
ApeKI GCWGC 1 cut(s) 44
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AspLEI GCGC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 372
BanI GGYRCC 2 cut(s) 80, 87
BauI CACGAG 1 cut(s) 70
BbvI GCAGC 1 cut(s) 31
BccI CCATC 2 cut(s) 238, 370
BciT130I CCWGG 1 cut(s) 85
BfoI RGCGCY 1 cut(s) 84
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 85
BmiI GGNNCC 3 cut(s) 82, 89, 123
BmrFI CCNGG 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bse3DI GCAATG 2 cut(s) 170, 248
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 126
BseMI GCAATG 2 cut(s) 170, 248
BseRI GAGGAG 2 cut(s) 150, 375
BseXI GCAGC 1 cut(s) 31
BsgI GTGCAG 1 cut(s) 153
BshFI GGCC 2 cut(s) 9, 299
BshNI GGYRCC 2 cut(s) 80, 87
BsiSI CCGG 2 cut(s) 119, 296
BsnI GGCC 2 cut(s) 9, 299
Bsp143I GATC 1 cut(s) 351
BspANI GGCC 2 cut(s) 9, 299
BspLI GGNNCC 3 cut(s) 82, 89, 123
BspT107I GGYRCC 2 cut(s) 80, 87
BsrDI GCAATG 2 cut(s) 170, 248
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 1 cut(s) 351
BssNI GRCGYC 1 cut(s) 81
BssSI CACGAG 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 126
Bst2BI CACGAG 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 240
BstACI GRCGYC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 7
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 1 cut(s) 354
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 5 cut(s) 94, 145, 172, 181, 211
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 31
BsuRI GGCC 2 cut(s) 9, 299
BtsI GCAGTG 4 cut(s) 141, 143, 179, 264
BtsIMutI CAGTG 4 cut(s) 141, 143, 179, 264
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 83
CviAII CATG 1 cut(s) 37
CviJI RGCY 4 cut(s) 9, 44, 75, 299
CviKI_1 RGCY 4 cut(s) 9, 44, 75, 299
DinI GGCGCC 1 cut(s) 82
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 126
Eco147I AGGCCT 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 126
EgeI GGCGCC 1 cut(s) 82
EheI GGCGCC 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 1 cut(s) 40
FaiI YATR 2 cut(s) 38, 152
FatI CATG 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
GlaI GCGC 1 cut(s) 82
GluI GCNGC 1 cut(s) 45
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 2 cut(s) 9, 299
HapII CCGG 2 cut(s) 119, 296
HhaI GCGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 1 cut(s) 40
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HinfI GANTC 1 cut(s) 115
HpaII CCGG 2 cut(s) 119, 296
HphI GGTGA 1 cut(s) 372
Hpy166II GTNNAC 1 cut(s) 279
Hpy188I TCNGA 1 cut(s) 351
Hpy8I GTNNAC 1 cut(s) 279
HpyAV CCTTC 2 cut(s) 269, 342
HpyCH4V TGCA 3 cut(s) 47, 97, 134
HpyF10VI GCNNNNNNNGC 5 cut(s) 94, 145, 172, 181, 211
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 1 cut(s) 40
HspAI GCGC 1 cut(s) 81
KasI GGCGCC 1 cut(s) 80
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 5 cut(s) 70, 97, 104, 132, 309
Lsp1109I GCAGC 1 cut(s) 31
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 1 cut(s) 227
MluCI AATT 2 cut(s) 357, 366
Mly113I GGCGCC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 7 cut(s) 20, 150, 171, 219, 297, 393, 396
MspI CCGG 2 cut(s) 119, 296
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
MwoI GCNNNNNNNGC 5 cut(s) 94, 145, 172, 181, 211
NarI GGCGCC 1 cut(s) 81
NdeII GATC 1 cut(s) 351
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 3 cut(s) 82, 89, 123
PceI AGGCCT 1 cut(s) 9
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 1 cut(s) 46
PluTI GGCGCC 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 3 cut(s) 82, 89, 123
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 351
ScrFI CCNGG 1 cut(s) 85
SetI ASST 7 cut(s) 46, 77, 93, 211, 261, 289, 385
SfoI GGCGCC 1 cut(s) 82
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 2 cut(s) 357, 366
SseBI AGGCCT 1 cut(s) 9
SspDI GGCGCC 1 cut(s) 80
StuI AGGCCT 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 83
StyI CCWWGG 1 cut(s) 126
TaqI TCGA 1 cut(s) 59
TasI AATT 2 cut(s) 357, 366
TfiI GAWTC 1 cut(s) 115
TscAI CASTG 4 cut(s) 141, 150, 186, 271
TseI GCWGC 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 378
TspRI CASTG 4 cut(s) 141, 150, 186, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.