RchiOBHm_Chr2g0122551

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
35578898 .. 35581307
2410 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49494

Sequence Viewer

Length: 468 bp
ATGCATGCACATTCTTTCAAGCAACACTTGAAAATGCAAATAGCTATATATTGGTTTAAGATATTGAAAGGCATGACAATGATAATGTTAGAGATGGAGTATGTCCAGTGGACTGCGAGGAGTTTTCAGGCTAAAGTTTTAGGTATGATACTGATGGTGGGCGGAGGCTGTATCGTGGGATTTTATCAGGGCCTCACCATCAGTATCATGCACTCTCCTGTTGGTAGCCACAGTGGGATGAATACACGAGAGCTTAGAGAGGACTGGTTTCGTAGTCCACTTCTAGTTTTAGTTGCATTAGCTGCCTCAGTGTGGGTGTCGTTGTTTCGGGTCTTGCTTCATTCCTCCAAATTAATCACACTCGCTAGGATGAGAGATCCCGTCTTCGTAGCCGTATTTAGCCCAATCTCACTAGTCTTTGTTATGGTGATGAGTTTGGTAGCATTGAGGGATGTTATCAATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

17.59

Weight (kDa)

9.91

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017232)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24890 FvH4_1g24890
malus_domestica MD15G1135500.v1.1
prunus_persica Prupe.4G273500_v2.0.a1
pyrus_communis pycom15g12280
rosa_chinensis RchiOBHm_Chr2g0122551
rosa_laevigata RLG00000018686
rosa_multiflora Rmu_sc0003832.1_g000004
rosa_roxburghii Rroxscaffold_2G00121480
rosa_samantha Rh2AG298100 Rh2BG306900 Rh2CG285000 Rh2DG321700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 162
AclWI GGATC 1 cut(s) 371
AfiI CCNNNNNNNGG 1 cut(s) 312
AgsI TTSAA 3 cut(s) 19, 31, 67
AhlI ACTAGT 1 cut(s) 412
AluBI AGCT 3 cut(s) 44, 253, 302
AluI AGCT 3 cut(s) 44, 253, 302
AlwI GGATC 1 cut(s) 371
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 302
AseI ATTAAT 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 2 cut(s) 187, 439
BauI CACGAG 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 376
BbvI GCAGC 1 cut(s) 289
BccI CCATC 3 cut(s) 88, 148, 206
BceAI ACGGC 1 cut(s) 377
BcuI ACTAGT 1 cut(s) 412
BfaI CTAG 3 cut(s) 284, 366, 413
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 376
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse1I ACTGG 2 cut(s) 106, 269
BseGI GGATG 3 cut(s) 243, 375, 457
BseLI CCNNNNNNNGG 1 cut(s) 312
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 2 cut(s) 106, 269
BseRI GAGGAG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 289
BshFI GGCC 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 312
BsnI GGCC 1 cut(s) 192
Bsp143I GATC 1 cut(s) 376
BspACI CCGC 1 cut(s) 162
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 320
BspPI GGATC 1 cut(s) 371
BsrI ACTGG 2 cut(s) 106, 269
BssMI GATC 1 cut(s) 376
BssSI CACGAG 1 cut(s) 246
Bst2BI CACGAG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 233
BstAPI GCANNNNNTGC 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 254, 307
BstF5I GGATG 3 cut(s) 243, 375, 457
BstKTI GATC 1 cut(s) 379
BstMBI GATC 1 cut(s) 376
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNSI RCATGY 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 289
BstV2I GAAGAC 1 cut(s) 376
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 3 cut(s) 243, 375, 457
BtsIMutI CAGTG 3 cut(s) 113, 238, 315
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 190
CviAII CATG 3 cut(s) 5, 73, 208
CviJI RGCY 9 cut(s) 44, 131, 168, 192, 228, 253, 302, 392, 402
CviKI_1 RGCY 9 cut(s) 44, 131, 168, 192, 228, 253, 302, 392, 402
DdeI CTNAG 2 cut(s) 254, 307
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
EciI GGCGGA 1 cut(s) 177
EcoO109I RGGNCCY 1 cut(s) 190
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 76, 211
FaiI YATR 8 cut(s) 6, 47, 49, 74, 102, 146, 209, 425
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FatI CATG 3 cut(s) 4, 72, 207
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 3 cut(s) 250, 382, 464
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 3 cut(s) 284, 366, 413
GluI GCNGC 1 cut(s) 303
HaeIII GGCC 1 cut(s) 192
Hin1II CATG 3 cut(s) 8, 76, 211
HphI GGTGA 2 cut(s) 187, 439
Hpy166II GTNNAC 2 cut(s) 111, 278
Hpy8I GTNNAC 2 cut(s) 111, 278
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 5 cut(s) 4, 8, 37, 211, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 2 cut(s) 254, 307
Hsp92II CATG 3 cut(s) 8, 76, 211
Kzo9I GATC 1 cut(s) 376
LpnPI CCDG 5 cut(s) 113, 119, 173, 231, 250
Lsp1109I GCAGC 1 cut(s) 289
MaeI CTAG 3 cut(s) 284, 366, 413
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 1 cut(s) 376
MflI RGATCY 1 cut(s) 376
MluCI AATT 1 cut(s) 350
MnlI CCTC 7 cut(s) 111, 158, 203, 253, 316, 355, 441
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 57, 353
MslI CAYNNNNRTG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 302
NdeII GATC 1 cut(s) 376
NlaIII CATG 3 cut(s) 8, 76, 211
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 304
PshBI ATTAAT 1 cut(s) 353
PspPI GGNCC 1 cut(s) 190
PsuI RGATCY 1 cut(s) 376
RseI CAYNNNNRTG 1 cut(s) 77
SaqAI TTAA 2 cut(s) 57, 353
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 1 cut(s) 376
Sau96I GGNCC 1 cut(s) 190
SetI ASST 4 cut(s) 46, 145, 255, 304
SmiMI CAYNNNNRTG 1 cut(s) 77
SpeI ACTAGT 1 cut(s) 412
SphI GCATGC 1 cut(s) 8
Sse9I AATT 1 cut(s) 350
SsiI CCGC 1 cut(s) 162
SspMI CTAG 3 cut(s) 284, 366, 413
TaaI ACNGT 1 cut(s) 233
TasI AATT 1 cut(s) 350
Tru1I TTAA 2 cut(s) 57, 353
Tru9I TTAA 2 cut(s) 57, 353
TscAI CASTG 3 cut(s) 113, 238, 315
TseI GCWGC 1 cut(s) 302
TspDTI ATGAA 2 cut(s) 254, 329
TspRI CASTG 3 cut(s) 113, 238, 315
VspI ATTAAT 1 cut(s) 353
XceI RCATGY 1 cut(s) 8
XspI CTAG 3 cut(s) 284, 366, 413
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.