Rh2DG321700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017232
Physical Location & Seq
Forward (+)
40224007 .. 40225115
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG321700.1

Sequence Viewer

Length: 582 bp
ATGATCCTACACCCCCAGTACTCCCTATTCAGGAGTCGGCATCCCTACCTGCACCACACTCATCACCTGCATCAGCCGAAGCAAAGGATAGTAGGAGAGGCAGATAAGTTATCTATATTAGAGCGGGGAGAGCAGGAGCCACAACAGTATCCAGAGGCATGTCAGTCACAGGAGAGGCCAGAGACACAGCAGGCAGAGCTAGAGGGAGAGCTGCCAGAGCGATCGAGAGAGGCAGAGTTAGAGCGCCTGAGAGAGGCAGAGCAGCCAGCGATAGATACTTCTACACAGGAGAAGATAGATGTAGAGGAGTCAGAGCAGCCAGGGCTACCTGCACTAGAGCAGCTAGAGGCTGATGAGTCTTCAGAGACACAATTAAAGTGGCCGAGAGAGGCAGAGCTTAGAGAGCCAGAGCAGCTAGCGGTAGACACTTCTACACAGGATAGGATGGAGGTAGAGGAGTCAGAGCAGCCAGAGGCTAACAAGTCCTCGAAGATACAGTTAGAGCAGCTGAGAGAGGTAGAGCTTAGAGAGCCAGAGCTGCCTGCACATGATTCCACACAAGATAGGCTTGAGGTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

22.52

Weight (kDa)

4.59

Isoelectric Point (pI)

66.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017232)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24890 FvH4_1g24890
malus_domestica MD15G1135500.v1.1
prunus_persica Prupe.4G273500_v2.0.a1
pyrus_communis pycom15g12280
rosa_chinensis RchiOBHm_Chr2g0122551
rosa_laevigata RLG00000018686
rosa_multiflora Rmu_sc0003832.1_g000004
rosa_roxburghii Rroxscaffold_2G00121480
rosa_samantha Rh2AG298100 Rh2BG306900 Rh2CG285000 Rh2DG321700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 75
Acc36I ACCTGC 3 cut(s) 57, 75, 337
AccBSI CCGCTC 1 cut(s) 124
AccI GTMKAC 1 cut(s) 423
AciI CCGC 2 cut(s) 124, 419
AcoI YGGCCR 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 30, 253
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 8 cut(s) 199, 211, 343, 397, 415, 508, 523, 538
AluI AGCT 8 cut(s) 199, 211, 343, 397, 415, 508, 523, 538
Alw26I GTCTC 2 cut(s) 176, 359
AoxI GGCC 2 cut(s) 176, 380
ApeKI GCWGC 8 cut(s) 211, 262, 316, 340, 412, 466, 505, 538
AspLEI GCGC 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 56
AsuNHI GCTAGC 1 cut(s) 415
BaeI ACNNNNGTAYC 2 cut(s) 131, 164
BbsI GAAGAC 1 cut(s) 351
BbvI GCAGC 8 cut(s) 198, 274, 328, 352, 424, 478, 517, 525
BccI CCATC 1 cut(s) 439
BciT130I CCWGG 1 cut(s) 321
BciVI GTATCC 1 cut(s) 159
BcoDI GTCTC 2 cut(s) 176, 359
BfaI CTAG 4 cut(s) 200, 335, 344, 416
BfoI RGCGCY 1 cut(s) 247
BfuAI ACCTGC 3 cut(s) 57, 75, 337
BfuI GTATCC 1 cut(s) 159
BisI GCNGC 8 cut(s) 212, 263, 317, 341, 413, 467, 506, 539
BlsI GCNGC 8 cut(s) 213, 264, 318, 342, 414, 468, 507, 540
BmcAI AGTACT 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 321
BmrI ACTGGG 1 cut(s) 10
BmsI GCATC 2 cut(s) 49, 79
BmtI GCTAGC 1 cut(s) 419
BmuI ACTGGG 1 cut(s) 10
BpiI GAAGAC 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 320
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 253
Bse1I ACTGG 1 cut(s) 16
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 2 cut(s) 40, 450
BseLI CCNNNNNNNGG 2 cut(s) 30, 253
BseMII CTCAG 2 cut(s) 239, 500
BseNI ACTGG 1 cut(s) 16
BseRI GAGGAG 2 cut(s) 320, 470
BseXI GCAGC 8 cut(s) 198, 274, 328, 352, 424, 478, 517, 525
BsgI GTGCAG 3 cut(s) 35, 315, 528
Bsh1285I CGRYCG 1 cut(s) 224
BshFI GGCC 2 cut(s) 178, 382
BsiEI CGRYCG 1 cut(s) 224
BslI CCNNNNNNNGG 2 cut(s) 30, 253
BsmAI GTCTC 2 cut(s) 176, 359
BsnI GGCC 2 cut(s) 178, 382
Bsp143I GATC 2 cut(s) 3, 221
BspACI CCGC 2 cut(s) 124, 419
BspANI GGCC 2 cut(s) 178, 382
BspCNI CTCAG 2 cut(s) 240, 501
BspLI GGNNCC 1 cut(s) 138
BspMI ACCTGC 3 cut(s) 57, 75, 337
BspOI GCTAGC 1 cut(s) 419
BsrBI CCGCTC 1 cut(s) 124
BsrI ACTGG 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 2 cut(s) 3, 221
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 2 cut(s) 147, 498
BstC8I GCNNGC 4 cut(s) 192, 267, 417, 543
BstDEI CTNAG 4 cut(s) 248, 398, 509, 524
BstENI CCTNNNNNAGG 1 cut(s) 251
BstF5I GGATG 2 cut(s) 40, 450
BstH2I RGCGCY 1 cut(s) 247
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 2 cut(s) 6, 224
BstMAI GTCTC 2 cut(s) 176, 359
BstMBI GATC 2 cut(s) 3, 221
BstMCI CGRYCG 1 cut(s) 224
BstMWI GCNNNNNNNGC 8 cut(s) 130, 196, 217, 322, 403, 412, 529, 538
BstNI CCWGG 1 cut(s) 321
BstNSI RCATGY 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 319
BstV1I GCAGC 8 cut(s) 198, 274, 328, 352, 424, 478, 517, 525
BstV2I GAAGAC 1 cut(s) 351
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 2 cut(s) 178, 382
BtsCI GGATG 2 cut(s) 40, 450
BveI ACCTGC 3 cut(s) 57, 75, 337
Cac8I GCNNGC 4 cut(s) 192, 267, 417, 543
CfoI GCGC 1 cut(s) 246
Csp6I GTAC 1 cut(s) 19
CspCI CAANNNNNGTGG 2 cut(s) 359, 394
CviAII CATG 2 cut(s) 159, 548
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 4 cut(s) 248, 398, 509, 524
DpnI GATC 2 cut(s) 5, 223
DpnII GATC 2 cut(s) 3, 221
EaeI YGGCCR 1 cut(s) 380
Eco57I CTGAAG 1 cut(s) 345
EcoNI CCTNNNNNAGG 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 319
FaeI CATG 2 cut(s) 162, 551
FaiI YATR 3 cut(s) 116, 160, 549
FalI AAGNNNNNCTT 1 cut(s) 552
FatI CATG 2 cut(s) 158, 547
FauI CCCGC 1 cut(s) 117
FblI GTMKAC 1 cut(s) 423
Fnu4HI GCNGC 8 cut(s) 212, 263, 317, 341, 413, 467, 506, 539
FokI GGATG 2 cut(s) 27, 457
Fsp4HI GCNGC 8 cut(s) 212, 263, 317, 341, 413, 467, 506, 539
FspBI CTAG 4 cut(s) 200, 335, 344, 416
GlaI GCGC 1 cut(s) 245
GluI GCNGC 8 cut(s) 212, 263, 317, 341, 413, 467, 506, 539
HaeII RGCGCY 1 cut(s) 247
HaeIII GGCC 2 cut(s) 178, 382
HhaI GCGC 1 cut(s) 246
Hin1II CATG 2 cut(s) 162, 551
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HinfI GANTC 5 cut(s) 34, 308, 356, 458, 551
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 3 cut(s) 313, 364, 463
Hpy188III TCNNGA 3 cut(s) 31, 152, 225
Hpy8I GTNNAC 1 cut(s) 424
HpyCH4III ACNGT 2 cut(s) 147, 498
HpyCH4V TGCA 4 cut(s) 52, 70, 332, 545
HpyF10VI GCNNNNNNNGC 8 cut(s) 130, 196, 217, 322, 403, 412, 529, 538
HpyF3I CTNAG 4 cut(s) 248, 398, 509, 524
Hsp92II CATG 2 cut(s) 162, 551
HspAI GCGC 1 cut(s) 244
Kzo9I GATC 2 cut(s) 3, 221
LmnI GCTCC 1 cut(s) 136
Lsp1109I GCAGC 8 cut(s) 198, 274, 328, 352, 424, 478, 517, 525
LweI GCATC 2 cut(s) 49, 79
MaeI CTAG 4 cut(s) 200, 335, 344, 416
MaeIII GTNAC 1 cut(s) 165
MalI GATC 2 cut(s) 5, 223
MbiI CCGCTC 1 cut(s) 124
MboI GATC 2 cut(s) 3, 221
MboII GAAGA 3 cut(s) 304, 351, 502
MluCI AATT 1 cut(s) 371
MlyI GAGTC 4 cut(s) 43, 317, 365, 467
MseI TTAA 1 cut(s) 374
MspA1I CMGCKG 1 cut(s) 508
MspR9I CCNGG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 8 cut(s) 130, 196, 217, 322, 403, 412, 529, 538
NdeII GATC 2 cut(s) 3, 221
NheI GCTAGC 1 cut(s) 415
NlaIII CATG 2 cut(s) 162, 551
NlaIV GGNNCC 1 cut(s) 138
NmeAIII GCCGAG 1 cut(s) 408
NmuCI GTSAC 1 cut(s) 165
NspI RCATGY 1 cut(s) 162
PaqCI CACCTGC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 551
PkrI GCNGC 8 cut(s) 213, 264, 318, 342, 414, 468, 507, 540
Ple19I CGATCG 1 cut(s) 224
PleI GAGTC 4 cut(s) 42, 316, 364, 466
PpsI GAGTC 4 cut(s) 42, 316, 364, 466
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 138
PvuI CGATCG 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 508
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 374
SatI GCNGC 8 cut(s) 212, 263, 317, 341, 413, 467, 506, 539
Sau3AI GATC 2 cut(s) 3, 221
ScaI AGTACT 1 cut(s) 20
SchI GAGTC 4 cut(s) 43, 317, 365, 467
ScrFI CCNGG 1 cut(s) 321
SfaNI GCATC 2 cut(s) 49, 79
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
Sse9I AATT 1 cut(s) 371
SsiI CCGC 2 cut(s) 124, 419
SspMI CTAG 4 cut(s) 200, 335, 344, 416
StyD4I CCNGG 1 cut(s) 319
TaaI ACNGT 2 cut(s) 147, 498
TaqI TCGA 2 cut(s) 224, 488
TasI AATT 1 cut(s) 371
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 1 cut(s) 551
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TseFI GTSAC 1 cut(s) 165
TseI GCWGC 8 cut(s) 211, 262, 316, 340, 412, 466, 505, 538
Tsp45I GTSAC 1 cut(s) 165
XagI CCTNNNNNAGG 1 cut(s) 251
XceI RCATGY 1 cut(s) 162
XmiI GTMKAC 1 cut(s) 423
XspI CTAG 4 cut(s) 200, 335, 344, 416
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.