Rroxscaffold_2G00121480

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
54119377 .. 54120311
935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00121480.1

Sequence Viewer

Length: 414 bp
ATGCACTCTCCTGTTGGTAGCCACATTGGGATGGATACACGAGAGCTTAGAGAGGACTGGTTTCGTGGTTCACTTCTAGTTTTAGTTGTATTAGCTGCCTCGAAGAATGTGGCGGCGCAGTATGGATCAACCATATGGTTGAGTTTCTACATAATTGTTGAGGGTATGCTCAAGACTTTGGTAGCCGCTGGGGTGTTAGAGGTGAGATCTTCATTTGCATGGAAGATTATAGCAAACATCAGATTGGTCGGCTATATATATTCGGGTGTCGTCATTTCGGGTCTTGCTTCATTCCTCCAAATCACACTCGCTAGGATGAGAGATCCTGTCTTCATAGCCGCATTTAGCTCTATCCCACTAGTCTTTGTTATGGTGATGAGTTTGGTAGCATTGAGGGATGTTATCAATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

137

Amino Acids

15.06

Weight (kDa)

9.22

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017232)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24890 FvH4_1g24890
malus_domestica MD15G1135500.v1.1
prunus_persica Prupe.4G273500_v2.0.a1
pyrus_communis pycom15g12280
rosa_chinensis RchiOBHm_Chr2g0122551
rosa_laevigata RLG00000018686
rosa_multiflora Rmu_sc0003832.1_g000004
rosa_roxburghii Rroxscaffold_2G00121480
rosa_samantha Rh2AG298100 Rh2BG306900 Rh2CG285000 Rh2DG321700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 113, 186, 339
AclWI GGATC 2 cut(s) 133, 317
AhlI ACTAGT 1 cut(s) 358
AluBI AGCT 3 cut(s) 46, 95, 348
AluI AGCT 3 cut(s) 46, 95, 348
AlwI GGATC 2 cut(s) 133, 317
ApeKI GCWGC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 118
AsuHPI GGTGA 2 cut(s) 214, 385
BauI CACGAG 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 322
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 25
BciVI GTATCC 1 cut(s) 28
BcuI ACTAGT 1 cut(s) 358
BfaI CTAG 3 cut(s) 77, 312, 359
BfuI GTATCC 1 cut(s) 28
BglII AGATCT 1 cut(s) 206
BisI GCNGC 4 cut(s) 96, 114, 186, 339
BlsI GCNGC 4 cut(s) 97, 115, 187, 340
BpiI GAAGAC 1 cut(s) 322
BpuEI CTTGAG 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 62
BseGI GGATG 3 cut(s) 36, 321, 403
BseNI ACTGG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 188
Bsp143I GATC 3 cut(s) 125, 206, 322
BspACI CCGC 3 cut(s) 113, 186, 339
BspPI GGATC 2 cut(s) 133, 317
BsrI ACTGG 1 cut(s) 62
BssMI GATC 3 cut(s) 125, 206, 322
BssSI CACGAG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 3 cut(s) 36, 321, 403
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 3 cut(s) 128, 209, 325
BstMBI GATC 3 cut(s) 125, 206, 322
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 322
BstX2I RGATCY 2 cut(s) 206, 322
BstYI RGATCY 2 cut(s) 206, 322
BsuI GTATCC 1 cut(s) 28
BtsCI GGATG 3 cut(s) 36, 321, 403
CfoI GCGC 1 cut(s) 118
CviAII CATG 1 cut(s) 219
CviJI RGCY 7 cut(s) 21, 46, 95, 185, 252, 338, 348
CviKI_1 RGCY 7 cut(s) 21, 46, 95, 185, 252, 338, 348
DdeI CTNAG 1 cut(s) 47
DpnI GATC 3 cut(s) 127, 208, 324
DpnII GATC 3 cut(s) 125, 206, 322
FaeI CATG 1 cut(s) 222
FatI CATG 1 cut(s) 218
FauNDI CATATG 1 cut(s) 134
Fnu4HI GCNGC 4 cut(s) 96, 114, 186, 339
FokI GGATG 3 cut(s) 43, 328, 410
Fsp4HI GCNGC 4 cut(s) 96, 114, 186, 339
FspBI CTAG 3 cut(s) 77, 312, 359
GlaI GCGC 1 cut(s) 117
GluI GCNGC 4 cut(s) 96, 114, 186, 339
GsaI CCCAGC 1 cut(s) 192
HhaI GCGC 1 cut(s) 118
Hin1II CATG 1 cut(s) 222
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HphI GGTGA 2 cut(s) 214, 385
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 1 cut(s) 242
Hpy188III TCNNGA 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 71
HpyCH4V TGCA 2 cut(s) 4, 218
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 1 cut(s) 222
HspAI GCGC 1 cut(s) 116
Kzo9I GATC 3 cut(s) 125, 206, 322
LpnPI CCDG 4 cut(s) 24, 43, 174, 339
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 3 cut(s) 77, 312, 359
MalI GATC 3 cut(s) 127, 208, 324
MboI GATC 3 cut(s) 125, 206, 322
MboII GAAGA 4 cut(s) 115, 201, 235, 322
MflI RGATCY 2 cut(s) 206, 322
MluCI AATT 1 cut(s) 153
MnlI CCTC 6 cut(s) 46, 109, 154, 193, 305, 387
MslI CAYNNNNRTG 2 cut(s) 29, 217
MspA1I CMGCKG 1 cut(s) 188
NdeI CATATG 1 cut(s) 134
NdeII GATC 3 cut(s) 125, 206, 322
NlaIII CATG 1 cut(s) 222
PkrI GCNGC 4 cut(s) 97, 115, 187, 340
PspFI CCCAGC 1 cut(s) 188
PsuI RGATCY 2 cut(s) 206, 322
RseI CAYNNNNRTG 2 cut(s) 29, 217
SatI GCNGC 4 cut(s) 96, 114, 186, 339
Sau3AI GATC 3 cut(s) 125, 206, 322
SetI ASST 4 cut(s) 48, 97, 204, 350
SmiMI CAYNNNNRTG 2 cut(s) 29, 217
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SpeI ACTAGT 1 cut(s) 358
Sse9I AATT 1 cut(s) 153
SsiI CCGC 3 cut(s) 113, 186, 339
SspMI CTAG 3 cut(s) 77, 312, 359
TaqI TCGA 1 cut(s) 101
TasI AATT 1 cut(s) 153
TauI GCSGC 3 cut(s) 116, 188, 341
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 201, 279, 322
XspI CTAG 3 cut(s) 77, 312, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.