RchiOBHm_Chr2g0173731

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017424
Physical Location & Seq
Reverse (-)
86608374 .. 86611821
3448 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54092

Sequence Viewer

Length: 399 bp
ATGCTAGGCGTTTTGCTCTGTTTCACTCTGCTCTTTTGGTGCCGACTCTGCAAGTGTTTCTTTTTTTGGCTCCTATTCTATTTTTTATTTGAGATTGATGGTTTTGTTTACATGTATATGCTGATTATATGTAGAGAGAAATTGATAGTGGTATTGGTTAAGTCAATGAAGAATCCAAGGACTGCTCTGATCAAGACCTCCGAAGTCAATGAAGAATCCAAGGACTGCTCTCATGATCAAGACCTCCATCATGGCTTTCGGCTGATATCTTCAATGCCTTTGGTGACAGTTTGCTTGACTCCACCACCGCTGATGCATTTGACCAATTGCTGTTGCAATTGCTGCTGGAGGCCTCACAAGACAAGACGTTTGTTTGCGAAGAAGCAGACAAGGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.74

Weight (kDa)

9.1

Isoelectric Point (pI)

52.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 39
AciI CCGC 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 1 cut(s) 273
AoxI GGCC 1 cut(s) 350
ApeKI GCWGC 1 cut(s) 342
ArsI GACNNNNNNTTYG 2 cut(s) 352, 384
AspLEI GCGC 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 295
BanI GGYRCC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 329
BccI CCATC 2 cut(s) 92, 255
BclI TGATCA 2 cut(s) 189, 235
BfaI CTAG 1 cut(s) 5
BfoI RGCGCY 1 cut(s) 397
BisI GCNGC 1 cut(s) 343
BlsI GCNGC 1 cut(s) 344
BmiI GGNNCC 2 cut(s) 41, 71
BmsI GCATC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 176, 219
BseDI CCNNGG 2 cut(s) 176, 219
BseXI GCAGC 1 cut(s) 329
BshFI GGCC 1 cut(s) 352
BshNI GGYRCC 1 cut(s) 39
BsnI GGCC 1 cut(s) 352
Bsp143I GATC 2 cut(s) 189, 235
BspACI CCGC 1 cut(s) 308
BspANI GGCC 1 cut(s) 352
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 41, 71
BspT107I GGYRCC 1 cut(s) 39
BssECI CCNNGG 2 cut(s) 176, 219
BssMI GATC 2 cut(s) 189, 235
BssT1I CCWWGG 2 cut(s) 176, 219
Bst4CI ACNGT 1 cut(s) 289
BstAPI GCANNNNNTGC 1 cut(s) 342
BstH2I RGCGCY 1 cut(s) 397
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 2 cut(s) 192, 238
BstMBI GATC 2 cut(s) 189, 235
BstMWI GCNNNNNNNGC 3 cut(s) 48, 342, 391
BstNSI RCATGY 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 329
BsuRI GGCC 1 cut(s) 352
CciI TCATGA 1 cut(s) 232
CfoI GCGC 1 cut(s) 396
CviAII CATG 3 cut(s) 112, 233, 251
CviJI RGCY 4 cut(s) 70, 255, 262, 352
CviKI_1 RGCY 4 cut(s) 70, 255, 262, 352
DpnI GATC 2 cut(s) 191, 237
DpnII GATC 2 cut(s) 189, 235
Eco130I CCWWGG 2 cut(s) 176, 219
Eco147I AGGCCT 1 cut(s) 352
Eco32I GATATC 1 cut(s) 267
EcoRV GATATC 1 cut(s) 267
EcoT14I CCWWGG 2 cut(s) 176, 219
EcoT22I ATGCAT 1 cut(s) 318
ErhI CCWWGG 2 cut(s) 176, 219
FaeI CATG 3 cut(s) 115, 236, 254
FaiI YATR 7 cut(s) 113, 117, 119, 128, 130, 234, 252
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FatI CATG 3 cut(s) 111, 232, 250
FbaI TGATCA 2 cut(s) 189, 235
Fnu4HI GCNGC 1 cut(s) 343
Fsp4HI GCNGC 1 cut(s) 343
FspBI CTAG 1 cut(s) 5
GlaI GCGC 1 cut(s) 395
GluI GCNGC 1 cut(s) 343
GsuI CTGGAG 1 cut(s) 367
HaeII RGCGCY 1 cut(s) 397
HaeIII GGCC 1 cut(s) 352
HhaI GCGC 1 cut(s) 396
Hin1II CATG 3 cut(s) 115, 236, 254
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HinfI GANTC 4 cut(s) 45, 172, 215, 298
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 189, 202
Hpy188III TCNNGA 3 cut(s) 193, 233, 239
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 3 cut(s) 51, 316, 336
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 342, 391
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 3 cut(s) 115, 236, 254
HspAI GCGC 1 cut(s) 394
Ksp22I TGATCA 2 cut(s) 189, 235
Kzo9I GATC 2 cut(s) 189, 235
LmnI GCTCC 1 cut(s) 75
LpnPI CCDG 1 cut(s) 331
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 1 cut(s) 303
MaeI CTAG 1 cut(s) 5
MaeII ACGT 1 cut(s) 367
MaeIII GTNAC 1 cut(s) 283
MalI GATC 2 cut(s) 191, 237
MboI GATC 2 cut(s) 189, 235
MboII GAAGA 4 cut(s) 181, 224, 261, 391
MfeI CAATTG 2 cut(s) 325, 337
MluCI AATT 3 cut(s) 140, 325, 337
MlyI GAGTC 2 cut(s) 39, 292
MnlI CCTC 4 cut(s) 208, 254, 342, 363
Mph1103I ATGCAT 1 cut(s) 318
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 116
MspA1I CMGCKG 1 cut(s) 310
MunI CAATTG 2 cut(s) 325, 337
MwoI GCNNNNNNNGC 3 cut(s) 48, 342, 391
NdeII GATC 2 cut(s) 189, 235
NlaIII CATG 3 cut(s) 115, 236, 254
NlaIV GGNNCC 2 cut(s) 41, 71
NmuCI GTSAC 1 cut(s) 283
NsiI ATGCAT 1 cut(s) 318
NspI RCATGY 1 cut(s) 115
PagI TCATGA 1 cut(s) 232
PceI AGGCCT 1 cut(s) 352
PciI ACATGT 1 cut(s) 111
PfeI GAWTC 2 cut(s) 172, 215
PkrI GCNGC 1 cut(s) 344
PleI GAGTC 2 cut(s) 39, 292
PpsI GAGTC 2 cut(s) 39, 292
PscI ACATGT 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 41, 71
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 1 cut(s) 343
Sau3AI GATC 2 cut(s) 189, 235
SchI GAGTC 2 cut(s) 39, 292
SetI ASST 3 cut(s) 200, 246, 370
SfaNI GCATC 1 cut(s) 303
SmiMI CAYNNNNRTG 1 cut(s) 116
Sse9I AATT 3 cut(s) 140, 325, 337
SseBI AGGCCT 1 cut(s) 352
SsiI CCGC 1 cut(s) 308
SspMI CTAG 1 cut(s) 5
StuI AGGCCT 1 cut(s) 352
StyI CCWWGG 2 cut(s) 176, 219
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 370
TasI AATT 3 cut(s) 140, 325, 337
TfiI GAWTC 2 cut(s) 172, 215
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 1 cut(s) 342
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 2 cut(s) 182, 225
XceI RCATGY 1 cut(s) 115
XspI CTAG 1 cut(s) 5
Zsp2I ATGCAT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.