Rh2BG662000

CLASP N terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017424
Physical Location & Seq
Reverse (-)
87667633 .. 87675292
7660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG662000.1

Sequence Viewer

Length: 492 bp
ATGTCTGCACTCGGTTTGCTTGACTCCACCACCGCTGATGCATTTGACCAATTGCTGTTGCAATTGCTGCTGGAGGCCTCACACGACAAGACGTTTGTTTGCGAAGAAGCAGACAAGGCGCTAAGAGCAGTGGTGAAGTATTTGACAACTCTGCCTCTGCTTCATAGGCTTAAAGGCTATGTCACCCATGCCCACCTCAAAGAAACTATAGGGAGAAGCAGAAGAGGAATTAGTCATGCAACAAGAAATCAAGGTCAGATATTCGCTATCACATTTCAAGCAACTTCTGTTTGTAGTATCAGTATTGTTTGCTTTGTGGTTGAGTTGCTGCTTTATACCATTCACATACATTTGCCTATGCTTAGATTTATCAAAAAAGAGTCATTCTGTAACTACGCCTTTATAAAAGGTATCCTTGATGTTGATCATTTCATTGATTACCTGAAGGAGGATGTACGAATTGTTCGTGACAATTCTACAGAGCCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLASP_N

Protein Analysis

163

Amino Acids

18.55

Weight (kDa)

7.08

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 404
AciI CCGC 1 cut(s) 33
AcuI CTGAAG 1 cut(s) 464
AfaI GTAC 1 cut(s) 456
AfiI CCNNNNNNNGG 1 cut(s) 448
AgsI TTSAA 1 cut(s) 278
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 2 cut(s) 67, 328
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
AspLEI GCGC 1 cut(s) 121
AsuHPI GGTGA 2 cut(s) 145, 175
BbvI GCAGC 2 cut(s) 54, 315
BciVI GTATCC 1 cut(s) 422
BclI TGATCA 1 cut(s) 424
BfmI CTRYAG 2 cut(s) 207, 477
BfoI RGCGCY 1 cut(s) 122
BfuI GTATCC 1 cut(s) 422
BisI GCNGC 2 cut(s) 68, 329
BlsI GCNGC 2 cut(s) 69, 330
BmsI GCATC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 92
BsaBI GATNNNNATC 1 cut(s) 423
Bsc4I CCNNNNNNNGG 1 cut(s) 448
Bse8I GATNNNNATC 1 cut(s) 423
BseGI GGATG 1 cut(s) 457
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 448
BseXI GCAGC 2 cut(s) 54, 315
BshFI GGCC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 448
BsnI GGCC 1 cut(s) 77
Bsp143I GATC 1 cut(s) 424
BspACI CCGC 1 cut(s) 33
BspANI GGCC 1 cut(s) 77
BssMI GATC 1 cut(s) 424
Bst6I CTCTTC 1 cut(s) 217
BstAPI GCANNNNNTGC 1 cut(s) 67
BstDEI CTNAG 2 cut(s) 122, 362
BstENI CCTNNNNNAGG 1 cut(s) 446
BstF5I GGATG 1 cut(s) 457
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 1 cut(s) 427
BstMBI GATC 1 cut(s) 424
BstMWI GCNNNNNNNGC 4 cut(s) 67, 116, 125, 166
BstSFI CTRYAG 2 cut(s) 207, 477
BstV1I GCAGC 2 cut(s) 54, 315
BsuI GTATCC 1 cut(s) 422
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 457
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 135
CfoI GCGC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 455
CviAII CATG 2 cut(s) 188, 236
CviJI RGCY 4 cut(s) 77, 169, 177, 484
CviKI_1 RGCY 4 cut(s) 77, 169, 177, 484
CviQI GTAC 1 cut(s) 455
DdeI CTNAG 2 cut(s) 122, 362
DpnI GATC 1 cut(s) 426
DpnII GATC 1 cut(s) 424
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Eco147I AGGCCT 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 464
EcoNI CCTNNNNNAGG 1 cut(s) 446
EcoT22I ATGCAT 1 cut(s) 43
FaeI CATG 2 cut(s) 191, 239
FaiI YATR 9 cut(s) 165, 180, 189, 209, 237, 336, 347, 359, 404
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 2 cut(s) 187, 235
FbaI TGATCA 1 cut(s) 424
Fnu4HI GCNGC 2 cut(s) 68, 329
FokI GGATG 1 cut(s) 464
Fsp4HI GCNGC 2 cut(s) 68, 329
GlaI GCGC 1 cut(s) 120
GluI GCNGC 2 cut(s) 68, 329
GsuI CTGGAG 1 cut(s) 92
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 1 cut(s) 77
HhaI GCGC 1 cut(s) 121
Hin1II CATG 2 cut(s) 191, 239
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HinfI GANTC 2 cut(s) 23, 380
HphI GGTGA 2 cut(s) 145, 175
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 1 cut(s) 467
HpyAV CCTTC 1 cut(s) 439
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 4 cut(s) 8, 41, 61, 239
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 116, 125, 166
HpyF3I CTNAG 2 cut(s) 122, 362
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 2 cut(s) 191, 239
HspAI GCGC 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 1 cut(s) 424
LpnPI CCDG 2 cut(s) 56, 455
Lsp1109I GCAGC 2 cut(s) 54, 315
LweI GCATC 1 cut(s) 28
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 3 cut(s) 181, 389, 467
MalI GATC 1 cut(s) 426
MboI GATC 1 cut(s) 424
MboII GAAGA 2 cut(s) 116, 234
MfeI CAATTG 2 cut(s) 50, 62
MluCI AATT 5 cut(s) 50, 62, 228, 459, 472
MlyI GAGTC 2 cut(s) 17, 389
MnlI CCTC 6 cut(s) 67, 88, 165, 206, 218, 442
Mph1103I ATGCAT 1 cut(s) 43
MseI TTAA 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 35
MunI CAATTG 2 cut(s) 50, 62
MwoI GCNNNNNNNGC 4 cut(s) 67, 116, 125, 166
NdeII GATC 1 cut(s) 424
NlaIII CATG 2 cut(s) 191, 239
NmuCI GTSAC 2 cut(s) 181, 467
NsiI ATGCAT 1 cut(s) 43
PceI AGGCCT 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 463
PkrI GCNGC 2 cut(s) 69, 330
PleI GAGTC 2 cut(s) 17, 388
PpsI GAGTC 2 cut(s) 17, 388
PsiI TTATAA 1 cut(s) 404
PsrI GAACNNNNNNTAC 2 cut(s) 447, 479
RsaI GTAC 1 cut(s) 456
RsaNI GTAC 1 cut(s) 455
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 2 cut(s) 68, 329
Sau3AI GATC 1 cut(s) 424
SchI GAGTC 2 cut(s) 17, 389
SetI ASST 5 cut(s) 95, 198, 256, 412, 444
SfaNI GCATC 1 cut(s) 28
SfcI CTRYAG 2 cut(s) 207, 477
Sse9I AATT 5 cut(s) 50, 62, 228, 459, 472
SseBI AGGCCT 1 cut(s) 77
SsiI CCGC 1 cut(s) 33
StuI AGGCCT 1 cut(s) 77
TaiI ACGT 1 cut(s) 95
TasI AATT 5 cut(s) 50, 62, 228, 459, 472
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 1 cut(s) 135
TseFI GTSAC 2 cut(s) 181, 467
TseI GCWGC 2 cut(s) 67, 328
Tsp45I GTSAC 2 cut(s) 181, 467
TspDTI ATGAA 2 cut(s) 152, 421
TspRI CASTG 1 cut(s) 135
XagI CCTNNNNNAGG 1 cut(s) 446
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.