Rorug01G0170700

CLASP N terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017424
Physical Location & Seq
Forward (+)
23222345 .. 23223891
1547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0170700.1

Sequence Viewer

Length: 933 bp
ATGACCCTCTTATCCTTCACCCCCTCTCGCCACCTTAACCTCAACCCCACTACCACTTTCGTCTCTATCGTACGCCGTCCCCCTCTCAACCCAGTTCCCTCCTCCCTCTTCTTCTGCCCCACCTCCCCTCCACTTCCGCTCCACATCCTCTACCGCCCCCCACGCCCCTCCCTTTCCCTCGTCTCCGCTCCACGCGCCGCCTCCTCCGCCGGGTACCTCTTGCATGATGCAGGAGCCACCGCCCTCGTACTCGCCGGCGCCTACACTCTCGTCCTCTGCTTCGATAATCTCACCAAGCGAAACCTCCTCCGACAGAGTTTGAGCAGAAAATTGGTCCACATATCATCTGGCCTGCTCTTCGTGCTTTCCTGGCCAATTTTCAGCACGTCAACCGAAGCTCGCTACTTTGCCTCTGTGGTACCCCTCTTTAATGGGTTGAGGCTTCTTCTTAGTGGCCTCTCCTTGGTCCCCAATGAAGGACTAGTCAAATCCGTCAGTCGTGAAGGAAACCCAAAGGAGTTGCTTAGGGGACCCTTGTATTATGTTCTTATACTGATCCTATCCGCTCTAGTGTTTTGGCGCGAGTCTCCGGTTGGAGTAATCTCCTTAGCAATGATGTGTGGTGGTGATGGTGTTGCTGATATCATGGGTAGAAGATTTGGGTCCATAAAGATCCCCTATAATCAAAAGAAGAGTTGGGCTGGGAGCATTTCCATGTTTGTTTTTGGGTTCTTGGTTTCCCTTGGGATGCTCTACTATTACTCAATTTTGGGATATTTCAATTTGGATTGGATGGATACGGTGCAAAAGGTTGCGTTCGTTTCTTTGGTGGCTACAGCAGTAGAATCCCTTCCGATTACAGAGGTAGTGGATGACAATATATCTGTTCCATTGGCAAGTATGGCAGCCGCATATTTCAGTTTTTCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLASP_N

Protein Analysis

310

Amino Acids

33.89

Weight (kDa)

9.59

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 213, 418
AccB1I GGYRCC 3 cut(s) 213, 257, 418
AccBSI CCGCTC 3 cut(s) 139, 188, 566
AccII CGCG 2 cut(s) 195, 582
AciI CCGC 8 cut(s) 137, 154, 186, 198, 207, 240, 564, 909
AclWI GGATC 2 cut(s) 550, 667
AcoI YGGCCR 1 cut(s) 371
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 4 cut(s) 72, 215, 249, 420
AfiI CCNNNNNNNGG 3 cut(s) 210, 463, 476
AgsI TTSAA 1 cut(s) 781
AhlI ACTAGT 1 cut(s) 481
AjiI CACGTC 1 cut(s) 387
AjnI CCWGG 1 cut(s) 368
AluBI AGCT 1 cut(s) 398
AluI AGCT 1 cut(s) 398
Alw26I GTCTC 3 cut(s) 67, 187, 591
AlwI GGATC 2 cut(s) 550, 667
AoxI GGCC 3 cut(s) 349, 371, 454
ApeKI GCWGC 1 cut(s) 905
Asp700I GAANNNNTTC 1 cut(s) 849
Asp718I GGTACC 2 cut(s) 213, 418
AspLEI GCGC 3 cut(s) 197, 260, 582
AspS9I GGNCC 4 cut(s) 334, 466, 530, 663
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 3 cut(s) 10, 283, 638
AvaII GGWCC 4 cut(s) 334, 466, 530, 663
BalI TGGCCA 1 cut(s) 373
BanI GGYRCC 3 cut(s) 213, 257, 418
BarI GAAGNNNNNNTAC 2 cut(s) 834, 866
BbvI GCAGC 1 cut(s) 917
BccI CCATC 2 cut(s) 623, 787
BceAI ACGGC 1 cut(s) 60
BciT130I CCWGG 1 cut(s) 370
BciVI GTATCC 1 cut(s) 790
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 3 cut(s) 67, 187, 591
BcuI ACTAGT 1 cut(s) 481
BfaI CTAG 2 cut(s) 482, 569
BfmI CTRYAG 1 cut(s) 834
BfoI RGCGCY 1 cut(s) 261
BfuI GTATCC 1 cut(s) 790
BisI GCNGC 3 cut(s) 198, 906, 909
BlsI GCNGC 3 cut(s) 199, 907, 910
Bme1390I CCNGG 2 cut(s) 211, 370
Bme18I GGWCC 4 cut(s) 334, 466, 530, 663
BmgBI CACGTC 1 cut(s) 387
BmgT120I GGNCC 4 cut(s) 334, 466, 530, 663
BmiI GGNNCC 8 cut(s) 215, 235, 259, 420, 468, 531, 532, 664
BmrFI CCNGG 2 cut(s) 211, 370
BmrI ACTGGG 1 cut(s) 86
BmsI GCATC 2 cut(s) 217, 738
BmuI ACTGGG 1 cut(s) 86
Bpu10I CCTNAGC 2 cut(s) 524, 607
BpuMI CCSGG 1 cut(s) 211
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 462, 742
BsaWI WCCGGW 1 cut(s) 589
BsaXI ACNNNNNCTCC 4 cut(s) 112, 123, 142, 153
Bsc4I CCNNNNNNNGG 3 cut(s) 210, 463, 476
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 618
BseBI CCWGG 1 cut(s) 370
BseDI CCNNGG 2 cut(s) 462, 742
BseGI GGATG 4 cut(s) 144, 753, 798, 877
BseLI CCNNNNNNNGG 3 cut(s) 210, 463, 476
BseMI GCAATG 1 cut(s) 618
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 3 cut(s) 91, 193, 296
BseXI GCAGC 1 cut(s) 917
BseYI CCCAGC 1 cut(s) 701
Bsh1236I CGCG 2 cut(s) 195, 582
BshFI GGCC 3 cut(s) 351, 373, 456
BshNI GGYRCC 3 cut(s) 213, 257, 418
BsiSI CCGG 3 cut(s) 210, 255, 590
BsiWI CGTACG 1 cut(s) 70
BslFI GGGAC 3 cut(s) 63, 452, 543
BslI CCNNNNNNNGG 3 cut(s) 210, 463, 476
BsmAI GTCTC 3 cut(s) 67, 187, 591
BsmBI CGTCTC 2 cut(s) 67, 187
BsmFI GGGAC 3 cut(s) 63, 452, 543
BsnI GGCC 3 cut(s) 351, 373, 456
Bsp143I GATC 2 cut(s) 555, 672
BspACI CCGC 8 cut(s) 137, 154, 186, 198, 207, 240, 564, 909
BspANI GGCC 3 cut(s) 351, 373, 456
BspFNI CGCG 2 cut(s) 195, 582
BspLI GGNNCC 8 cut(s) 215, 235, 259, 420, 468, 531, 532, 664
BspPI GGATC 2 cut(s) 550, 667
BspQI GCTCTTC 1 cut(s) 362
BspT107I GGYRCC 3 cut(s) 213, 257, 418
BsrBI CCGCTC 3 cut(s) 139, 188, 566
BsrDI GCAATG 1 cut(s) 618
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 2 cut(s) 462, 742
BssMI GATC 2 cut(s) 555, 672
BssNI GRCGYC 1 cut(s) 258
BssT1I CCWWGG 2 cut(s) 462, 742
Bst2UI CCWGG 1 cut(s) 370
Bst4CI ACNGT 1 cut(s) 802
Bst6I CTCTTC 3 cut(s) 113, 362, 686
BstACI GRCGYC 1 cut(s) 258
BstC8I GCNNGC 3 cut(s) 256, 353, 400
BstDEI CTNAG 3 cut(s) 449, 524, 607
BstF5I GGATG 4 cut(s) 144, 753, 798, 877
BstFNI CGCG 2 cut(s) 195, 582
BstH2I RGCGCY 1 cut(s) 261
BstHHI GCGC 3 cut(s) 197, 260, 582
BstKTI GATC 2 cut(s) 558, 675
BstMAI GTCTC 3 cut(s) 67, 187, 591
BstMBI GATC 2 cut(s) 555, 672
BstMWI GCNNNNNNNGC 6 cut(s) 162, 194, 206, 361, 370, 902
BstNI CCWGG 1 cut(s) 370
BstSCI CCNGG 2 cut(s) 209, 368
BstSFI CTRYAG 1 cut(s) 834
BstUI CGCG 2 cut(s) 195, 582
BstV1I GCAGC 1 cut(s) 917
BstX2I RGATCY 1 cut(s) 672
BstYI RGATCY 1 cut(s) 672
BsuI GTATCC 1 cut(s) 790
BsuRI GGCC 3 cut(s) 351, 373, 456
BtrI CACGTC 1 cut(s) 387
BtsCI GGATG 4 cut(s) 144, 753, 798, 877
Cac8I GCNNGC 3 cut(s) 256, 353, 400
CfoI GCGC 3 cut(s) 197, 260, 582
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 4 cut(s) 334, 466, 530, 663
Csp6I GTAC 4 cut(s) 71, 214, 248, 419
CviAII CATG 3 cut(s) 224, 646, 715
CviJI RGCY 9 cut(s) 236, 351, 373, 398, 442, 456, 701, 833, 908
CviKI_1 RGCY 9 cut(s) 236, 351, 373, 398, 442, 456, 701, 833, 908
CviQI GTAC 4 cut(s) 71, 214, 248, 419
DdeI CTNAG 3 cut(s) 449, 524, 607
DinI GGCGCC 1 cut(s) 259
DpnI GATC 2 cut(s) 557, 674
DpnII GATC 2 cut(s) 555, 672
EaeI YGGCCR 1 cut(s) 371
Eam1104I CTCTTC 3 cut(s) 113, 362, 686
EarI CTCTTC 3 cut(s) 113, 362, 686
EciI GGCGGA 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 462, 742
Eco32I GATATC 1 cut(s) 643
Eco47I GGWCC 4 cut(s) 334, 466, 530, 663
EcoO109I RGGNCCY 1 cut(s) 530
EcoRII CCWGG 1 cut(s) 368
EcoRV GATATC 1 cut(s) 643
EcoT14I CCWWGG 2 cut(s) 462, 742
EgeI GGCGCC 1 cut(s) 259
EheI GGCGCC 1 cut(s) 259
ErhI CCWWGG 2 cut(s) 462, 742
Esp3I CGTCTC 2 cut(s) 67, 187
FaeI CATG 3 cut(s) 227, 649, 718
FaqI GGGAC 3 cut(s) 63, 452, 543
FatI CATG 3 cut(s) 223, 645, 714
Fnu4HI GCNGC 3 cut(s) 198, 906, 909
FokI GGATG 4 cut(s) 131, 760, 805, 884
Fsp4HI GCNGC 3 cut(s) 198, 906, 909
FspBI CTAG 2 cut(s) 482, 569
GlaI GCGC 3 cut(s) 196, 259, 581
GluI GCNGC 3 cut(s) 198, 906, 909
GsaI CCCAGC 1 cut(s) 705
HaeII RGCGCY 1 cut(s) 261
HaeIII GGCC 3 cut(s) 351, 373, 456
HapII CCGG 3 cut(s) 210, 255, 590
HhaI GCGC 3 cut(s) 197, 260, 582
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 3 cut(s) 227, 649, 718
Hin6I GCGC 3 cut(s) 195, 258, 580
HinP1I GCGC 3 cut(s) 195, 258, 580
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HinfI GANTC 2 cut(s) 584, 845
HpaII CCGG 3 cut(s) 210, 255, 590
HphI GGTGA 3 cut(s) 10, 283, 638
Hpy166II GTNNAC 2 cut(s) 337, 390
Hpy188I TCNGA 2 cut(s) 311, 855
Hpy188III TCNNGA 1 cut(s) 500
Hpy8I GTNNAC 2 cut(s) 337, 390
HpyAV CCTTC 4 cut(s) 25, 470, 497, 860
HpyCH4III ACNGT 1 cut(s) 802
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 3 cut(s) 223, 230, 805
HpyF10VI GCNNNNNNNGC 6 cut(s) 162, 194, 206, 361, 370, 902
HpyF3I CTNAG 3 cut(s) 449, 524, 607
HpySE526I ACGT 1 cut(s) 386
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 3 cut(s) 227, 649, 718
HspAI GCGC 3 cut(s) 195, 258, 580
KasI GGCGCC 1 cut(s) 257
KflI GGGWCCC 1 cut(s) 530
KpnI GGTACC 2 cut(s) 217, 422
KroI GCCGGC 1 cut(s) 254
KroNI GCCGGC 1 cut(s) 256
Kzo9I GATC 2 cut(s) 555, 672
LguI GCTCTTC 1 cut(s) 362
LmnI GCTCC 4 cut(s) 144, 193, 233, 705
Lsp1109I GCAGC 1 cut(s) 917
LweI GCATC 2 cut(s) 217, 738
MaeI CTAG 2 cut(s) 482, 569
MaeII ACGT 1 cut(s) 386
MalI GATC 2 cut(s) 557, 674
MbiI CCGCTC 3 cut(s) 139, 188, 566
MboI GATC 2 cut(s) 555, 672
MboII GAAGA 6 cut(s) 100, 103, 349, 437, 666, 703
MflI RGATCY 1 cut(s) 672
MlsI TGGCCA 1 cut(s) 373
MluCI AATT 4 cut(s) 329, 375, 765, 781
MluNI TGGCCA 1 cut(s) 373
Mly113I GGCGCC 1 cut(s) 258
MlyI GAGTC 1 cut(s) 593
MmeI TCCRAC 2 cut(s) 334, 574
Mox20I TGGCCA 1 cut(s) 373
MreI CGCCGGCG 1 cut(s) 254
MroNI GCCGGC 1 cut(s) 254
MroXI GAANNNNTTC 1 cut(s) 849
MscI TGGCCA 1 cut(s) 373
MseI TTAA 2 cut(s) 36, 429
MslI CAYNNNNRTG 1 cut(s) 713
Msp20I TGGCCA 1 cut(s) 373
MspI CCGG 3 cut(s) 210, 255, 590
MspR9I CCNGG 2 cut(s) 211, 370
MvaI CCWGG 1 cut(s) 370
MvnI CGCG 2 cut(s) 195, 582
MwoI GCNNNNNNNGC 6 cut(s) 162, 194, 206, 361, 370, 902
NaeI GCCGGC 1 cut(s) 256
NarI GGCGCC 1 cut(s) 258
NciI CCSGG 1 cut(s) 211
NdeII GATC 2 cut(s) 555, 672
NgoMIV GCCGGC 1 cut(s) 254
NlaIII CATG 3 cut(s) 227, 649, 718
NlaIV GGNNCC 8 cut(s) 215, 235, 259, 420, 468, 531, 532, 664
PciSI GCTCTTC 1 cut(s) 362
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PdiI GCCGGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 849
PfeI GAWTC 1 cut(s) 845
Pfl23II CGTACG 1 cut(s) 70
PkrI GCNGC 3 cut(s) 199, 907, 910
PleI GAGTC 1 cut(s) 592
PluTI GGCGCC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 592
PpuMI RGGWCCY 1 cut(s) 530
Psp5II RGGWCCY 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 368
PspFI CCCAGC 1 cut(s) 701
PspGI CCWGG 1 cut(s) 368
PspLI CGTACG 1 cut(s) 70
PspN4I GGNNCC 8 cut(s) 215, 235, 259, 420, 468, 531, 532, 664
PspPI GGNCC 4 cut(s) 334, 466, 530, 663
PspPPI RGGWCCY 1 cut(s) 530
PsuI RGATCY 1 cut(s) 672
RsaI GTAC 4 cut(s) 72, 215, 249, 420
RsaNI GTAC 4 cut(s) 71, 214, 248, 419
RseI CAYNNNNRTG 1 cut(s) 713
SapI GCTCTTC 1 cut(s) 362
SaqAI TTAA 2 cut(s) 36, 429
SatI GCNGC 3 cut(s) 198, 906, 909
Sau3AI GATC 2 cut(s) 555, 672
Sau96I GGNCC 4 cut(s) 334, 466, 530, 663
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 2 cut(s) 211, 370
SetI ASST 9 cut(s) 36, 42, 125, 219, 306, 389, 400, 813, 867
SfaNI GCATC 2 cut(s) 217, 738
SfcI CTRYAG 1 cut(s) 834
SfoI GGCGCC 1 cut(s) 259
SgrAI CRCCGGYG 1 cut(s) 254
SinI GGWCC 4 cut(s) 334, 466, 530, 663
SmiMI CAYNNNNRTG 1 cut(s) 713
SpeI ACTAGT 1 cut(s) 481
Sse9I AATT 4 cut(s) 329, 375, 765, 781
SsiI CCGC 8 cut(s) 137, 154, 186, 198, 207, 240, 564, 909
SspDI GGCGCC 1 cut(s) 257
SspMI CTAG 2 cut(s) 482, 569
StyD4I CCNGG 2 cut(s) 209, 368
StyI CCWWGG 2 cut(s) 462, 742
TaaI ACNGT 1 cut(s) 802
TaiI ACGT 1 cut(s) 389
TaqI TCGA 1 cut(s) 282
TasI AATT 4 cut(s) 329, 375, 765, 781
TauI GCSGC 2 cut(s) 200, 911
TfiI GAWTC 1 cut(s) 845
Tru1I TTAA 2 cut(s) 36, 429
Tru9I TTAA 2 cut(s) 36, 429
TseI GCWGC 1 cut(s) 905
TspDTI ATGAA 1 cut(s) 489
TspGWI ACGGA 1 cut(s) 481
VpaK11BI GGWCC 4 cut(s) 334, 466, 530, 663
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 849
XspI CTAG 2 cut(s) 482, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.