Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017424

Physical Location & Seq

Genomic Coordinates Forward (+)

37777909 .. 37784743

Gene Structure 6835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCCGGCTTCGAGATGATATCTTCAATGCTTTTAGTGACGAGTTCGCTCGACACCACCACCCACGATGCATTTGACCAATTGCTTGTTGCAATTGCTTCTTTGGAGACCTTACAATACAAGGCGTACGTTTGTGAATATGCGGACAAGGCACTAAGAGCGATAGTGAGGTATTTGACTACTCTGCCTCTACTTCATAGGCTTAAAGGCTATGTCACCCATGCCCACCTCAAAGAAGCGAGAAGAGGAATCGGTCATGGAACAAGAAATCAAGGTCAAGCCTTCAAGGAACTCCCCGCCGCCTCTACGAACCTCTCCGCCATGCAAGGCTGCCACGGACGGTGCGCAAGGACCATACGAAGCCAATGGAAGAAGTTTGGTGAGGATTGGTGGCCGCCGGAGGAGAGAGATATGGCGGTTGAACAAAATCGGCGATTTACGGTCGAAATGGAGAGAGAGAGAATCGGCAAAGTTTTGAATTTTGGTTTTGTTGGTGCTTTTGAAATATTTGGATTGATAAATATTTTGCAATTTTTTTTTATCATGGAAGAATTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N

Protein Analysis

186

Amino Acids

21.35

Weight (kDa)

7.79

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0168241 RchiOBHm_Chr2g0173731 RchiOBHm_Chr4g0425601
rosa_laevigata	RLG00000015228
rosa_roxburghii	Rroxscaffold_1G00029220 Rroxscaffold_5G00350310
rosa_rugosa	Rorug01G0170700 Rorug01G0170700 Rorug03G0218300
rosa_samantha	Rh2BG662000 Rh2DG677200 Rh6BG031600 Rh7BG234100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	346
AciI	CCGC	6 cut(s)	143, 297, 300, 318, 395, 416
AcoI	YGGCCR	2 cut(s)	3, 392
AcsI	RAATTY	2 cut(s)	478, 551
AfaI	GTAC	1 cut(s)	128
AgsI	TTSAA	5 cut(s)	27, 286, 422, 478, 503
Alw26I	GTCTC	1 cut(s)	101
AoxI	GGCC	2 cut(s)	3, 392
ApeKI	GCWGC	1 cut(s)	330
ApoI	RAATTY	2 cut(s)	478, 551
Asp700I	GAANNNNTTC	1 cut(s)	552
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	351
AsuHPI	GGTGA	2 cut(s)	208, 392
AvaII	GGWCC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	101
BisI	GCNGC	3 cut(s)	300, 331, 395
BlsI	GCNGC	3 cut(s)	301, 332, 396
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	351
BmsI	GCATC	1 cut(s)	58
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	334
Bse118I	RCCGGY	1 cut(s)	5
BseDI	CCNNGG	1 cut(s)	334
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	317
Bsh1285I	CGRYCG	1 cut(s)	444
BshFI	GGCC	2 cut(s)	5, 394
BsiEI	CGRYCG	1 cut(s)	444
BsiSI	CCGG	2 cut(s)	6, 398
BsiWI	CGTACG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	5, 394
Bso31I	GGTCTC	1 cut(s)	101
BspACI	CCGC	6 cut(s)	143, 297, 300, 318, 395, 416
BspANI	GGCC	2 cut(s)	5, 394
BspTNI	GGTCTC	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	5
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	334
Bst4CI	ACNGT	2 cut(s)	342, 442
Bst6I	CTCTTC	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	334
BstHHI	GCGC	1 cut(s)	347
BstMAI	GTCTC	1 cut(s)	101
BstMCI	CGRYCG	1 cut(s)	444
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 158
BstV1I	GCAGC	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	5, 394
BtgI	CCRYGG	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	347
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	4 cut(s)	221, 257, 322, 544
CviJI	RGCY	8 cut(s)	5, 9, 202, 210, 281, 330, 363, 394
CviKI_1	RGCY	8 cut(s)	5, 9, 202, 210, 281, 330, 363, 394
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	1 cut(s)	155
EaeI	YGGCCR	2 cut(s)	3, 392
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
EciI	GGCGGA	1 cut(s)	307
Eco31I	GGTCTC	1 cut(s)	101
Eco32I	GATATC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	351
EcoRV	GATATC	1 cut(s)	21
EcoT22I	ATGCAT	1 cut(s)	73
FaeI	CATG	4 cut(s)	224, 260, 325, 547
FaiI	YATR	9 cut(s)	141, 198, 213, 222, 258, 323, 356, 413, 545
FatI	CATG	4 cut(s)	220, 256, 321, 543
FauI	CCCGC	1 cut(s)	304
Fnu4HI	GCNGC	3 cut(s)	300, 331, 395
Fsp4HI	GCNGC	3 cut(s)	300, 331, 395
FspI	TGCGCA	1 cut(s)	346
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	3 cut(s)	300, 331, 395
HaeIII	GGCC	2 cut(s)	5, 394
HapII	CCGG	2 cut(s)	6, 398
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	4 cut(s)	224, 260, 325, 547
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HinfI	GANTC	2 cut(s)	249, 462
HpaII	CCGG	2 cut(s)	6, 398
HphI	GGTGA	2 cut(s)	208, 392
Hpy188III	TCNNGA	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	2 cut(s)	342, 442
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	4 cut(s)	71, 92, 325, 529
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 158
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	4 cut(s)	224, 260, 325, 547
HspAI	GCGC	1 cut(s)	345
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
LpnPI	CCDG	2 cut(s)	19, 411
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	37, 214
MboII	GAAGA	4 cut(s)	15, 255, 382, 560
MfeI	CAATTG	2 cut(s)	80, 93
MluCI	AATT	5 cut(s)	80, 93, 478, 530, 551
MnlI	CCTC	8 cut(s)	162, 198, 239, 239, 313, 323, 376, 394
Mph1103I	ATGCAT	1 cut(s)	73
MroNI	GCCGGC	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	552
MseI	TTAA	2 cut(s)	204, 559
MspI	CCGG	2 cut(s)	6, 398
MunI	CAATTG	2 cut(s)	80, 93
MwoI	GCNNNNNNNGC	2 cut(s)	149, 158
NaeI	GCCGGC	1 cut(s)	7
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	224, 260, 325, 547
NmuCI	GTSAC	2 cut(s)	37, 214
NsbI	TGCGCA	1 cut(s)	346
NsiI	ATGCAT	1 cut(s)	73
PdiI	GCCGGC	1 cut(s)	7
PdmI	GAANNNNTTC	1 cut(s)	552
PfeI	GAWTC	2 cut(s)	249, 462
Pfl23II	CGTACG	1 cut(s)	126
PkrI	GCNGC	3 cut(s)	301, 332, 396
PspLI	CGTACG	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	351
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SaqAI	TTAA	2 cut(s)	204, 559
SatI	GCNGC	3 cut(s)	300, 331, 395
Sau96I	GGNCC	1 cut(s)	351
SetI	ASST	6 cut(s)	113, 132, 173, 231, 277, 315
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	1 cut(s)	351
Sse9I	AATT	5 cut(s)	80, 93, 478, 530, 551
SsiI	CCGC	6 cut(s)	143, 297, 300, 318, 395, 416
SspI	AATATT	2 cut(s)	507, 523
TaaI	ACNGT	2 cut(s)	342, 442
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	3 cut(s)	12, 51, 444
TaqII	GACCGA	1 cut(s)	242
TasI	AATT	5 cut(s)	80, 93, 478, 530, 551
TauI	GCSGC	2 cut(s)	302, 397
TfiI	GAWTC	2 cut(s)	249, 462
Tru1I	TTAA	2 cut(s)	204, 559
Tru9I	TTAA	2 cut(s)	204, 559
TseFI	GTSAC	2 cut(s)	37, 214
TseI	GCWGC	1 cut(s)	330
Tsp45I	GTSAC	2 cut(s)	37, 214
TspDTI	ATGAA	2 cut(s)	185, 545
TspGWI	ACGGA	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	351
XapI	RAATTY	2 cut(s)	478, 551
XmnI	GAANNNNTTC	1 cut(s)	552
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.